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Clc01G14370 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G14370
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationClcChr01:27178900..27179389
RNA-Seq ExpressionClc01G14370
SyntenyClc01G14370
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022148963.1 uncharacterized protein LOC111017501 [Momordica charantia]2.6e-2168.83Show/hide
Query:  STVMERFGIQSRVEEDYLCQVFQFTRKGLMKMNDYLRVMKNHADNLELAGSPIPQHSLVSQVLIGLDGEYNPIVATI
        + + E FG+QS+ EEDYL QVFQ TRKG +KM D+LRVMK+HADNL  AGSP+P  SL+SQVL+GLD EYNP+VATI
Subjt:  STVMERFGIQSRVEEDYLCQVFQFTRKGLMKMNDYLRVMKNHADNLELAGSPIPQHSLVSQVLIGLDGEYNPIVATI

XP_038887140.1 uncharacterized protein LOC120077331 [Benincasa hispida]5.4e-1968.83Show/hide
Query:  STVMERFGIQSRVEEDYLCQVFQFTRKGLMKMNDYLRVMKNHADNLELAGSPIPQHSLVSQVLIGLDGEYNPIVATI
        +++ + F +QSRVEEDYL  VFQ TRKG +KM DYLR MK +ADNLE AGSP+PQ +LVSQVL+GLD EYN IVATI
Subjt:  STVMERFGIQSRVEEDYLCQVFQFTRKGLMKMNDYLRVMKNHADNLELAGSPIPQHSLVSQVLIGLDGEYNPIVATI

XP_038902487.1 uncharacterized protein LOC120089143 [Benincasa hispida]7.0e-1966.23Show/hide
Query:  STVMERFGIQSRVEEDYLCQVFQFTRKGLMKMNDYLRVMKNHADNLELAGSPIPQHSLVSQVLIGLDGEYNPIVATI
        + + E FG+QSR  EDYL QVFQ T KG MKM +YLRVMK H+DNL L GSP+P  +LVSQVL+GLD E+NP VATI
Subjt:  STVMERFGIQSRVEEDYLCQVFQFTRKGLMKMNDYLRVMKNHADNLELAGSPIPQHSLVSQVLIGLDGEYNPIVATI

XP_038904321.1 uncharacterized protein LOC120090675 [Benincasa hispida]2.7e-1868Show/hide
Query:  VMERFGIQSRVEEDYLCQVFQFTRKGLMKMNDYLRVMKNHADNLELAGSPIPQHSLVSQVLIGLDGEYNPIVATI
        + + FGIQSR EEDYL  VFQ TRKG +KM DYLR MK + DNLE AGSP+P  +LV QVL+GLD EYN IVATI
Subjt:  VMERFGIQSRVEEDYLCQVFQFTRKGLMKMNDYLRVMKNHADNLELAGSPIPQHSLVSQVLIGLDGEYNPIVATI

XP_038905164.1 uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida]1.7e-1763.64Show/hide
Query:  STVMERFGIQSRVEEDYLCQVFQFTRKGLMKMNDYLRVMKNHADNLELAGSPIPQHSLVSQVLIGLDGEYNPIVATI
        +++ + FG+QSRVEEDYL  VFQ TRKG +KM +YL+ MK + DNLE AGSP+P  +LVSQVL+GLD EYN IVA I
Subjt:  STVMERFGIQSRVEEDYLCQVFQFTRKGLMKMNDYLRVMKNHADNLELAGSPIPQHSLVSQVLIGLDGEYNPIVATI

TrEMBL top hitse value%identityAlignment
A0A0A0LXB7 Uncharacterized protein1.7e-1560.56Show/hide
Query:  FGIQSRVEEDYLCQVFQFTRKGLMKMNDYLRVMKNHADNLELAGSPIPQHSLVSQVLIGLDGEYNPIVATI
        FG++SR EED+L Q FQ TRKG   M DYLR+MK +ADNL  A SPIP+ +L+SQVL+GLD  YNP++  I
Subjt:  FGIQSRVEEDYLCQVFQFTRKGLMKMNDYLRVMKNHADNLELAGSPIPQHSLVSQVLIGLDGEYNPIVATI

A0A5A7UY76 Integrase, catalytic core3.9e-1556.41Show/hide
Query:  SSSSVVSTVMERFGIQSRVEEDYLCQVFQFTRKGLMKMNDYLRVMKNHADNLELAGSPIPQHSLVSQVLIGLDGEYNP
        ++  +   + + FG+QSR EED+L   FQ TRKG  KM DYLR+MK +A+NL  AGSPIP  SL+SQVL+GLD  YNP
Subjt:  SSSSVVSTVMERFGIQSRVEEDYLCQVFQFTRKGLMKMNDYLRVMKNHADNLELAGSPIPQHSLVSQVLIGLDGEYNP

A0A5D3E3L7 Uncharacterized protein2.5e-1457.33Show/hide
Query:  VMERFGIQSRVEEDYLCQVFQFTRKGLMKMNDYLRVMKNHADNLELAGSPIPQHSLVSQVLIGLDGEYNPIVATI
        +   FGI+SR EE +L   FQ TR+G  KM DYLR+MK +ADNL  AGSP+P   L+SQVL+GLD  YNP+ A I
Subjt:  VMERFGIQSRVEEDYLCQVFQFTRKGLMKMNDYLRVMKNHADNLELAGSPIPQHSLVSQVLIGLDGEYNPIVATI

A0A6J1D5J0 uncharacterized protein LOC1110175011.3e-2168.83Show/hide
Query:  STVMERFGIQSRVEEDYLCQVFQFTRKGLMKMNDYLRVMKNHADNLELAGSPIPQHSLVSQVLIGLDGEYNPIVATI
        + + E FG+QS+ EEDYL QVFQ TRKG +KM D+LRVMK+HADNL  AGSP+P  SL+SQVL+GLD EYNP+VATI
Subjt:  STVMERFGIQSRVEEDYLCQVFQFTRKGLMKMNDYLRVMKNHADNLELAGSPIPQHSLVSQVLIGLDGEYNPIVATI

A0A6J1DCW4 uncharacterized protein LOC1110195986.6e-1546.22Show/hide
Query:  MVVQSLVTAEQSSNLAAPTFAQVVSQRESTSSASGASSSSVVSTVMERFGIQSRVEEDYLCQVFQFTRKGLMKMNDYLRVMKNHADNLELAGSPIPQHSL
        +VV  L+     +++AA    QV+           ++S  + + V E FG+QSR E DYL QVFQ T KG ++M +YL++MK+HADNL LAGS +    L
Subjt:  MVVQSLVTAEQSSNLAAPTFAQVVSQRESTSSASGASSSSVVSTVMERFGIQSRVEEDYLCQVFQFTRKGLMKMNDYLRVMKNHADNLELAGSPIPQHSL

Query:  VSQVLIGLDGEYNPIVATI
        VSQVL GLD EYNPIV  +
Subjt:  VSQVLIGLDGEYNPIVATI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTTCAATCGCTAGTAACAGCAGAACAATCGAGCAACCTAGCAGCTCCAACATTTGCACAAGTTGTTTCTCAACGTGAATCCACGTCTTCAGCATCTGGA
GCATCGAGCTCCTCTGTTGTCTCCACAGTCATGGAGCGGTTCGGAATACAATCTCGAGTCGAAGAAGATTACCTTTGTCAGGTATTTCAGTTCACTCGAAAGGGC
TTGATGAAAATGAATGATTATTTACGAGTTATGAAAAATCATGCCGACAATCTGGAATTGGCTGGAAGCCCTATTCCTCAACATTCATTGGTATCTCAAGTCCTA
ATCGGACTAGATGGAGAGTATAATCCCATCGTAGCCACGATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTTCAATCGCTAGTAACAGCAGAACAATCGAGCAACCTAGCAGCTCCAACATTTGCACAAGTTGTTTCTCAACGTGAATCCACGTCTTCAGCATCTGGA
GCATCGAGCTCCTCTGTTGTCTCCACAGTCATGGAGCGGTTCGGAATACAATCTCGAGTCGAAGAAGATTACCTTTGTCAGGTATTTCAGTTCACTCGAAAGGGC
TTGATGAAAATGAATGATTATTTACGAGTTATGAAAAATCATGCCGACAATCTGGAATTGGCTGGAAGCCCTATTCCTCAACATTCATTGGTATCTCAAGTCCTA
ATCGGACTAGATGGAGAGTATAATCCCATCGTAGCCACGATCTAA
Protein sequenceShow/hide protein sequence
MVVQSLVTAEQSSNLAAPTFAQVVSQRESTSSASGASSSSVVSTVMERFGIQSRVEEDYLCQVFQFTRKGLMKMNDYLRVMKNHADNLELAGSPIPQHSLVSQVL
IGLDGEYNPIVATI