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Clc01G14560 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G14560
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionU6 snRNA-associated Sm-like protein LSm8
Genome locationClcChr01:27341223..27343938
RNA-Seq ExpressionClc01G14560
SyntenyClc01G14560
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005688 - U6 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR034103 - Sm-like protein Lsm8
IPR044642 - U6 snRNA-associated Sm-like protein Lsm1/8


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137538.1 sm-like protein LSM8 [Cucumis sativus]2.4e-1898.04Show/hide
Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
        MASGPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK

XP_022155134.1 sm-like protein LSM8 [Momordica charantia]1.1e-18100Show/hide
Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
        MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK

XP_031403511.1 sm-like protein LSM8 [Punica granatum]2.4e-1898.04Show/hide
Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
        MASGPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK

XP_038893736.1 sm-like protein LSM8 isoform X2 [Benincasa hispida]1.1e-2656.93Show/hide
Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKGQVACPVRLVEVRVNWPGHSQISKKRKKKKVGVLDFQLTIHRSIHEGLA
        MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK          E++                         T+H        
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKGQVACPVRLVEVRVNWPGHSQISKKRKKKKVGVLDFQLTIHRSIHEGLA

Query:  CPSLPSLFYAMDRRRSATCFGFIYNQRRQYKHCWGAR
              L +    RRSATCFG IYNQRRQYKHCWGAR
Subjt:  CPSLPSLFYAMDRRRSATCFGFIYNQRRQYKHCWGAR

XP_039026549.1 sm-like protein LSM8 [Hibiscus syriacus]2.4e-1898.04Show/hide
Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
        MA+GPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK

TrEMBL top hitse value%identityAlignment
A0A1S3ATI1 U6 snRNA-associated Sm-like protein LSm81.1e-1898.04Show/hide
Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
        MASGPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK

A0A218VR65 U6 snRNA-associated Sm-like protein LSm81.1e-1898.04Show/hide
Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
        MASGPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK

A0A6J1DPC5 U6 snRNA-associated Sm-like protein LSm85.1e-19100Show/hide
Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
        MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK

A0A6J1GT46 U6 snRNA-associated Sm-like protein LSm85.1e-19100Show/hide
Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
        MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK

A0A6J1K221 U6 snRNA-associated Sm-like protein LSm85.1e-19100Show/hide
Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
        MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK

SwissProt top hitse value%identityAlignment
O95777 U6 snRNA-associated Sm-like protein LSm81.9e-1065.91Show/hide
Query:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYST
        LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+
Subjt:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYST

Q3ZCE0 U6 snRNA-associated Sm-like protein LSm81.9e-1065.91Show/hide
Query:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYST
        LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+
Subjt:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYST

Q5RCP3 U6 snRNA-associated Sm-like protein LSm81.9e-1065.91Show/hide
Query:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYST
        LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+
Subjt:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYST

Q6ZWM4 U6 snRNA-associated Sm-like protein LSm81.9e-1065.91Show/hide
Query:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYST
        LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+
Subjt:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYST

Q8VYI0 Sm-like protein LSM87.1e-1888.24Show/hide
Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
        MA+  GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STK
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK

Arabidopsis top hitse value%identityAlignment
AT1G19120.1 Small nuclear ribonucleoprotein family protein5.4e-0537.04Show/hide
Query:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKGQVACPVRL
        L + +D+ + V+  DGR ++G+L+ FDQ  N +L+E++ERV    G + C + L
Subjt:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKGQVACPVRL

AT1G65700.1 Small nuclear ribonucleoprotein family protein5.1e-1988.24Show/hide
Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
        MA+  GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STK
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK

AT1G65700.2 Small nuclear ribonucleoprotein family protein5.1e-1988.24Show/hide
Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
        MA+  GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STK
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK

AT1G65700.3 Small nuclear ribonucleoprotein family protein5.1e-1988.24Show/hide
Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
        MA+  GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STK
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK

AT3G14080.1 Small nuclear ribonucleoprotein family protein4.6e-0434.48Show/hide
Query:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKGQVACPVRLVEVR
        L S +D+ + V+  DGR ++G L+ FDQ  N +L+ + ERV   +     P+ L  +R
Subjt:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKGQVACPVRLVEVR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGTGGACCTGGACTTGAATCTCTGGTTGATCAAACAATATCAGTTATCACAAATGACGGTCGCAATATAGTGGGAGTGTTGAAAGGGTTTGACCAGGCTACGAA
TATTATCCTTGATGAATCTCATGAACGTGTTTACTCAACCAAGGGTCAAGTGGCTTGTCCCGTGAGATTAGTCGAGGTGCGCGTAAACTGGCCTGGACACTCACAGATAT
CAAAAAAAAGAAAAAAGAAAAAAGTGGGAGTTCTAGACTTTCAATTGACCATACATCGAAGTATACATGAAGGGCTTGCATGCCCTAGTTTGCCATCTCTATTCTATGCA
ATGGATAGAAGGCGTTCAGCAACTTGTTTTGGGTTTATATATAATCAGAGGCGACAATATAAGCATTGTTGGGGAGCTAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGTGGACCTGGACTTGAATCTCTGGTTGATCAAACAATATCAGTTATCACAAATGACGGTCGCAATATAGTGGGAGTGTTGAAAGGGTTTGACCAGGCTACGAA
TATTATCCTTGATGAATCTCATGAACGTGTTTACTCAACCAAGGGTCAAGTGGCTTGTCCCGTGAGATTAGTCGAGGTGCGCGTAAACTGGCCTGGACACTCACAGATAT
CAAAAAAAAGAAAAAAGAAAAAAGTGGGAGTTCTAGACTTTCAATTGACCATACATCGAAGTATACATGAAGGGCTTGCATGCCCTAGTTTGCCATCTCTATTCTATGCA
ATGGATAGAAGGCGTTCAGCAACTTGTTTTGGGTTTATATATAATCAGAGGCGACAATATAAGCATTGTTGGGGAGCTAGATGA
Protein sequenceShow/hide protein sequence
MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKGQVACPVRLVEVRVNWPGHSQISKKRKKKKVGVLDFQLTIHRSIHEGLACPSLPSLFYA
MDRRRSATCFGFIYNQRRQYKHCWGAR