; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G15200 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G15200
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionphotosystem I reaction center subunit N, chloroplastic
Genome locationClcChr01:27876249..27878102
RNA-Seq ExpressionClc01G15200
SyntenyClc01G15200
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0030093 - chloroplast photosystem I (cellular component)
InterPro domainsIPR008796 - Photosystem I reaction centre subunit N, chloroplastic
IPR044907 - Photosystem I reaction centre subunit N superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604288.1 Photosystem I reaction center subunit N, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.1e-8495.32Show/hide
Query:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK
        MATMNSSVLACNYAISGAGSADL+SK+ A PSVASPGVVGYKLPAIRAQQARVPEAKN+GRR+ALLYLGATLFAAAAAASNSSANAGVIE+YLEKSKANK
Subjt:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK

Query:  ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
        ELNDKKRLATSGANFARAYTV+FGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
Subjt:  ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW

XP_004148659.1 photosystem I reaction center subunit N, chloroplastic [Cucumis sativus]9.6e-8696.49Show/hide
Query:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK
        MATMNSSVLACNYAISGAGSADLNSKLTA PSVASPGVVGYKLPAIRAQQ +VPEAKN+GRRTALLYLGA+LFAAAAAASNSSANAGVIEDYLEKSKANK
Subjt:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK

Query:  ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
        ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Subjt:  ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW

XP_008441057.1 PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo]7.8e-8899.42Show/hide
Query:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK
        MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK
Subjt:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK

Query:  ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
        ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Subjt:  ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW

XP_022950888.1 photosystem I reaction center subunit N, chloroplastic-like [Cucurbita moschata]1.1e-8495.32Show/hide
Query:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK
        MATMNSSVLACNYAISGAGSADL+SK+ A PSVASPGVVGYKLPAIRAQQARVPEAKN+GRR+ALLYLGATLFAAAAAASNSSANAGVIE+YLEKSKANK
Subjt:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK

Query:  ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
        ELNDKKRLATSGANFARAYTV+FGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
Subjt:  ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW

XP_038883748.1 photosystem I reaction center subunit N, chloroplastic isoform X1 [Benincasa hispida]3.5e-88100Show/hide
Query:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK
        MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK
Subjt:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK

Query:  ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
        ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
Subjt:  ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW

TrEMBL top hitse value%identityAlignment
A0A0A0KFM1 Uncharacterized protein4.6e-8696.49Show/hide
Query:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK
        MATMNSSVLACNYAISGAGSADLNSKLTA PSVASPGVVGYKLPAIRAQQ +VPEAKN+GRRTALLYLGA+LFAAAAAASNSSANAGVIEDYLEKSKANK
Subjt:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK

Query:  ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
        ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Subjt:  ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW

A0A1S3B240 photosystem I reaction center subunit N, chloroplastic3.8e-8899.42Show/hide
Query:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK
        MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK
Subjt:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK

Query:  ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
        ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Subjt:  ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW

A0A5D3DQX9 Photosystem I reaction center subunit N3.8e-8899.42Show/hide
Query:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK
        MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK
Subjt:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK

Query:  ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
        ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Subjt:  ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW

A0A6J1BT08 photosystem I reaction center subunit N, chloroplastic isoform X19.7e-8494.15Show/hide
Query:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK
        MATMNSSVLACNYAISGAGSA+LNSKL+A P VASPGV GYKLPAIRAQQARVPEAKN+GRRTALLYLGATLFAAAAAASNS+ANAGVIE+YLEKSKANK
Subjt:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK

Query:  ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
        ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDL LECEGKDK+KCGSNVFWKW
Subjt:  ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW

A0A6J1GG47 photosystem I reaction center subunit N, chloroplastic-like5.1e-8595.32Show/hide
Query:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK
        MATMNSSVLACNYAISGAGSADL+SK+ A PSVASPGVVGYKLPAIRAQQARVPEAKN+GRR+ALLYLGATLFAAAAAASNSSANAGVIE+YLEKSKANK
Subjt:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANK

Query:  ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
        ELNDKKRLATSGANFARAYTV+FGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
Subjt:  ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW

SwissProt top hitse value%identityAlignment
O65107 Photosystem I reaction center subunit N, chloroplastic (Fragment)2.0e-4183.7Show/hide
Query:  SNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
        +  SA A + ++YLEKSKANKELNDKKRLATSGANFARAYTVEFG+C+FP NFTGCQDLAKQKKVPFISDDLE+ECEGK+K+KCGSNVFWKW
Subjt:  SNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW

P31093 Photosystem I reaction center subunit N, chloroplastic1.5e-4467.83Show/hide
Query:  AVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKF
        AVP  ASP           A   RV  A  + RR+ALL L A    AA AAS  SA A V ++YLEKSK NKELNDKKR ATSGANFARAYTV+FG+CKF
Subjt:  AVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKF

Query:  PENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
        P NFTGCQDLAKQKKVPFI+DDLE+ECEGK+K+KCGSNVFWKW
Subjt:  PENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW

P49107 Photosystem I reaction center subunit N, chloroplastic1.3e-5666.47Show/hide
Query:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYK-LPAIRAQQARVPEAK-NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKA
        MA MNSSVL C+YAI+G+GS +LN K+  V S    G      +P I+AQ+    +   + GRR+A+++L ATLF+ AA   ++SANAGVI++YLE+SK 
Subjt:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYK-LPAIRAQQARVPEAK-NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKA

Query:  NKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
        NKELNDKKRLATSGANFARA+TV+FG+CKFPENFTGCQDLAKQKKVPFIS+D+ LECEGKDKYKCGSNVFWKW
Subjt:  NKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW

Q9SBN5 Photosystem I reaction center subunit N, chloroplastic1.5e-2553.79Show/hide
Query:  AIRAQQARVPEAK-----------NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFT
        A+RAQ A+V  A+           +   R  LL LG  L AAA A    +ANAGV+ED L KS ANK LN+KKRLATS AN AR+ TV  GTC+FPENF 
Subjt:  AIRAQQARVPEAK-----------NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFT

Query:  GCQDLAKQKKVPFISDDLELECEGKDKYKCGS
        GC++LA  K V +I++DL++ECEGKD   CGS
Subjt:  GCQDLAKQKKVPFISDDLELECEGKDKYKCGS

Arabidopsis top hitse value%identityAlignment
AT5G64040.1 photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)9.0e-5866.47Show/hide
Query:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYK-LPAIRAQQARVPEAK-NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKA
        MA MNSSVL C+YAI+G+GS +LN K+  V S    G      +P I+AQ+    +   + GRR+A+++L ATLF+ AA   ++SANAGVI++YLE+SK 
Subjt:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYK-LPAIRAQQARVPEAK-NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKA

Query:  NKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
        NKELNDKKRLATSGANFARA+TV+FG+CKFPENFTGCQDLAKQKKVPFIS+D+ LECEGKDKYKCGSNVFWKW
Subjt:  NKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW

AT5G64040.2 photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)3.2e-3961.81Show/hide
Query:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYK-LPAIRAQQARVPEAK-NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKA
        MA MNSSVL C+YAI+G+GS +LN K+  V S    G      +P I+AQ+    +   + GRR+A+++L ATLF+ AA   ++SANAGVI++YLE+SK 
Subjt:  MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYK-LPAIRAQQARVPEAK-NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKA

Query:  NKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQK
        NKELNDKKRLATSGANFARA+TV+FG+CKFPENFTGCQDLAKQK
Subjt:  NKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACCATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCCGGAGCTGGGTCAGCTGACCTGAACTCCAAACTCACCGCCGTCCCTTCTGTTGCGTCTCCTGG
GGTTGTGGGATACAAGTTGCCTGCGATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAACGAAGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCACCCTCTTTG
CTGCTGCTGCGGCTGCCTCCAACTCCTCTGCCAATGCTGGAGTCATTGAAGATTACCTTGAGAAGAGTAAAGCTAACAAGGAGTTGAATGACAAGAAACGATTGGCAACA
AGTGGGGCAAACTTTGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCTAAACAAAAGAAAGTTCCATTTAT
CTCTGATGATTTGGAATTGGAGTGTGAGGGTAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA
mRNA sequenceShow/hide mRNA sequence
TTATAATCTAGCCAATTTTATTAATAATAAAATTGAATTTACTTCATGGTTTGGTAAACATGAGATGAAGAAGTGGAATTTGAAGCACTCCTTCAAGATTTCAAAGTGGG
TCCAAAATTGAAGCTCGCCACAAAAATTTCCATGTCCGAAAACCCTAATCACAGCCATGGTTTGCCAATTGGGAGTGAGGAAATCTCACCTTATCCACACTCTCACCACA
ATCTCTTATCCAATTCCATCTCAAACATCCCCTCTTTTATCAGATTCCCTCATAATCCCACTACCCATTAACAACTGACAGCCATTAATTCCATCTCCGAGTTTGTCCAA
TCAGTTGCAAACCAATGGCCACCATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCCGGAGCTGGGTCAGCTGACCTGAACTCCAAACTCACCGCCGTCCCTTCT
GTTGCGTCTCCTGGGGTTGTGGGATACAAGTTGCCTGCGATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAACGAAGGAAGGAGGACTGCGCTTCTTTACCTTGG
AGCCACCCTCTTTGCTGCTGCTGCGGCTGCCTCCAACTCCTCTGCCAATGCTGGAGTCATTGAAGATTACCTTGAGAAGAGTAAAGCTAACAAGGAGTTGAATGACAAGA
AACGATTGGCAACAAGTGGGGCAAACTTTGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCTAAACAAAAG
AAAGTTCCATTTATCTCTGATGATTTGGAATTGGAGTGTGAGGGTAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGAAGAGAAGAGAACCATTTTAA
AGTCTTTGTATTCCTCACCACCATTAGTTACTCTTCCCCTTGTATCTAATTTTTCAACTCTTAAAAAGTGTGAAATTTTATTATGCCTTTTTGGGGACATTTGTTCCAAT
TCCAGTGCTTTCTTTCTTCTCTTCGAGACCAAAAGAAGCAAAATGAGAGTAGAAACCCTAGACATCAATTGCATTAACATTTGTTAGAATTTTTCATCAATAAACATTAC
AAAAATTTGAGTACCACTTACTACTCTCCTTCATAATTTGACACATCATTAAATGGGATATTAATTTATTATGTAGACTCTACATTTATCTTACTAT
Protein sequenceShow/hide protein sequence
MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLAT
SGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW