| GenBank top hits | e value | %identity | Alignment |
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| GAU19483.1 hypothetical protein TSUD_77270 [Trifolium subterraneum] | 1.9e-77 | 34.35 | Show/hide |
Query: ANATNNFPAATRMP-NFNSPPL--NQLLNQITTIKIEGYLLGHKICPPMFIRQNPSNASNETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLL
+N N+ P++ + + N+ PL + +L I K++GY+LG + CP FI + S+ + ++ E W DQ L
Subjt: ANATNNFPAATRMP-NFNSPPL--NQLLNQITTIKIEGYLLGHKICPPMFIRQNPSNASNETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLL
Query: LGWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALISQVLLGLDENYNAIV
LGW+ NS+T EIATQL+ E SK LWD Q L G +R++ YL+ F RKG M +YL MK + L AG+P + LI Q L GLD YN +V
Subjt: LGWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALISQVLLGLDENYNAIV
Query: ATLQRKPDISWLHHNTQRHKIRVAAEINTL-NVEAISVEIEVRAEEEIDPPAKYVE----------------RLVIQLMSATIASTKNLILI--------
L + +SW+ + Q + + I L N+ +++ D K R + N I I
Subjt: ATLQRKPDISWLHHNTQRHKIRVAAEINTL-NVEAISVEIEVRAEEEIDPPAKYVE----------------RLVIQLMSATIASTKNLILI--------
Query: -------------------------SPKVKNWYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAKN
S + +WY DSGA+NHVT TE+ G + VGNG L I + G++ L + LNL +IL+VP+I KN
Subjt: -------------------------SPKVKNWYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAKN
Query: LVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRLG
L+SVSKLA DNN+ VEF E+ C VKDK + + +LKG LKDGLY L T K N SA +S+ K + HRRLG
Subjt: LVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRLG
Query: HSSSRIFYLITKGCNISF-KSDATEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAFE
H ++++ + + C + SD FC ACQ GK H L F SS S A + EL+HTDVWGP +++S+GF+YYV F+DDFSR+ WIYPL+ K +T+ AF
Subjt: HSSSRIFYLITKGCNISF-KSDATEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAFE
Query: HFMQMMHTQFNSSIKAIQSD
F + QFN IK IQ D
Subjt: HFMQMMHTQFNSSIKAIQSD
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| PNX76291.1 gag/pol polyprotein - maize retrotransposon Hopscotch, partial [Trifolium pratense] | 5.1e-78 | 32.91 | Show/hide |
Query: ANATNNFPA--ATRMPNFNSPP-LNQLLNQITTIKIEGYLLGHKICPPMFIRQNPSNASNETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLL
+N N+ P+ + ++ N P + +L I +++GY+LG K CP FI T +D +++ NPE+E W DQ L
Subjt: ANATNNFPA--ATRMPNFNSPP-LNQLLNQITTIKIEGYLLGHKICPPMFIRQNPSNASNETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLL
Query: LGWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALISQVLLGLDENYNAIV
LGWL NS+T IATQL+ E S LWD Q L G +R++ YL+ F TRKG M +YL MK ++ L AG+P + LI Q L GLD YN +V
Subjt: LGWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALISQVLLGLDENYNAIV
Query: ATLQRKPDISWLHHNTQ----RHKIRVAAEINTLNVEA----------------------------------------------------------ISVE
L + +SW+ Q ++I + L + A I+++
Subjt: ATLQRKPDISWLHHNTQ----RHKIRVAAEINTLNVEA----------------------------------------------------------ISVE
Query: IEVRAEEEIDPPAKYVERLVIQLMSATIASTKNLILISPKVKNWYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNL
R ++ +A +AS ++ + +WY DSGA+NHVT + +E+ G + VGNG L+I + G++ L + LNL
Subjt: IEVRAEEEIDPPAKYVERLVIQLMSATIASTKNLILISPKVKNWYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNL
Query: KNILHVPDIAKNLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINS
+IL+VP I KNL+SVSKLA DNN+ VEF E+ C VKDK + + +L+G LKDGLY L E +++ ++
Subjt: KNILHVPDIAKNLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINS
Query: AVTKTTSHRRLGHSSSRIFYLITKGCNISFK-SDATEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYP
K + HR+LGH ++++ ++ K CN+ SD FC ACQ GK H L F +S S A + EL+HTDVWGP ++SS+GF+YYV F+DDF+R+ WIYP
Subjt: AVTKTTSHRRLGHSSSRIFYLITKGCNISFK-SDATEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYP
Query: LRLKGDTMVAFEHFMQMMHTQFNSSIKAIQSD
L+ K DT AF F M+ QF+ IK IQ D
Subjt: LRLKGDTMVAFEHFMQMMHTQFNSSIKAIQSD
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| PNX78574.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trifolium pratense] | 8.7e-78 | 35.43 | Show/hide |
Query: ANATNNFPA--ATRMPNFNSPPLNQL-LNQITTIKIEGYLLGHKICPPMFIRQNPSNASNETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLL
+N N+ P+ + + N P L L I +++GY+LG K CP FI + AEAS + INP++ W DQ +
Subjt: ANATNNFPA--ATRMPNFNSPPLNQL-LNQITTIKIEGYLLGHKICPPMFIRQNPSNASNETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLL
Query: LGWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALISQVLLGLDENYNAIV
LGWL N++T A+QL+ E SK LW+ Q L +R+ YLR F TRKG M +YL MK ++ L AGSP + LI Q L GLD +YN IV
Subjt: LGWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALISQVLLGLDENYNAIV
Query: ATLQRKPDISWLHHNTQ----RHKIRVAAEINTLNVEAISVEI-----------------------------EVRAEEEIDPPAKYVERLVIQL-----M
L + ++SW+ Q ++ N LN A + + R +I I+
Subjt: ATLQRKPDISWLHHNTQ----RHKIRVAAEINTLNVEAISVEI-----------------------------EVRAEEEIDPPAKYVERLVIQL-----M
Query: SATIASTKNLILISPKVKN-------------WYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAK
S T +S N + + N WY DSGA+NHVT TE G + VGNG LKI + G++ L N LNL ++L+VP I K
Subjt: SATIASTKNLILISPKVKN-------------WYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAK
Query: NLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRL
NL+SVSKL DNN+ VEF D C VKDK + + +L+G LKDGLY L S+ + N C K + HR+L
Subjt: NLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRL
Query: GHSSSRIFYLITKGCNI-SFKSDATEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAF
GH S+ + + K CN+ + SD +FC ACQLGKSH L F SS S A + ELIHTDVWGP + S +GF+YYV F+DD SR+ WIYPL+ K DT+ AF
Subjt: GHSSSRIFYLITKGCNI-SFKSDATEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAF
Query: EHFMQMMHTQFNSSIKAIQSD
F M+ QFN IK IQ D
Subjt: EHFMQMMHTQFNSSIKAIQSD
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| PNX94503.1 putative retrotransposon Ty1-copia subclass protein, partial [Trifolium pratense] | 2.7e-79 | 35.1 | Show/hide |
Query: NATNNFPA--ATRMPNFNSPPLNQL-LNQITTIKIEGYLLGHKICPPMFIRQNPSNASNETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLLL
N N+ P+ + ++ N P L L I K +GY+LG K CP F+ TSI TE INP+Y+ W DQ LL
Subjt: NATNNFPA--ATRMPNFNSPPLNQL-LNQITTIKIEGYLLGHKICPPMFIRQNPSNASNETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLLL
Query: GWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALISQVLLGLDENYNAIVA
GWL NS+T +IATQ++ E SK LWD Q L G +R+ YL+ F T K M +YL MK ++ L AGSP S L+ Q L GLD YN +V
Subjt: GWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALISQVLLGLDENYNAIVA
Query: TLQRKPDISWLHHNTQ----RHKIRVAAEINTLNVEAISVEIEVRAE---------------------------EEIDPPA------------------K
L + +ISW+ Q ++ N +N+ A S + E PP +
Subjt: TLQRKPDISWLHHNTQ----RHKIRVAAEINTLNVEAISVEIEVRAE---------------------------EEIDPPA------------------K
Query: YVERLVIQLMSATIASTKNLILISP---KVKNWYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAK
+ + + A + + + SP + WY DSGA+NHVT L E G + VGNG LKI + G+T L + +NL+N+L+VP+I K
Subjt: YVERLVIQLMSATIASTKNLILISP---KVKNWYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAK
Query: NLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRL
NL+SVSKL DNN VEF E+YC VKDK + + +LKG LKDGLY L +++ P N C + IS+ K HR+L
Subjt: NLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRL
Query: GHSSSRIFYLITKGCNISFK-SDATEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAF
GH ++++ + K N+ SD FC ACQ GK H L F +S S A + +LIHTDVWGP +LS + F+YYV FLDDFSR+ WI+PL+ K +T+ AF
Subjt: GHSSSRIFYLITKGCNISFK-SDATEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAF
Query: EHFMQMMHTQFNSSIKAIQSD
F ++ QFN IK I+ D
Subjt: EHFMQMMHTQFNSSIKAIQSD
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| PNY01489.1 copia-like polyprotein, partial [Trifolium pratense] | 1.8e-78 | 34.73 | Show/hide |
Query: ANATNNFPA--ATRMPNFNSPPLNQL-LNQITTIKIEGYLLGHKICPPMFIRQNPSNASNETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLL
+N N+ P+ + ++ N P L L I K +GY+LG K CP F VT++D ++ +NP+++ W+ DQ L
Subjt: ANATNNFPA--ATRMPNFNSPPLNQL-LNQITTIKIEGYLLGHKICPPMFIRQNPSNASNETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLL
Query: LGWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALISQVLLGLDENYNAIV
LGWL NS+ +IATQL+ E SK LWD Q L G +++ YL+ F TRKG M EYL MK S+ L +GSP + L+ Q L GLD YN +V
Subjt: LGWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALISQVLLGLDENYNAIV
Query: ATLQRKPDISWLHHNTQRHKIRVAAEIN--------TLNVEA-ISVEIEVRAEE--------------------------------------EIDPPAKY
L + ++SW+ + Q + + ++ TLN A + + E R + +D ++
Subjt: ATLQRKPDISWLHHNTQRHKIRVAAEIN--------TLNVEA-ISVEIEVRAEE--------------------------------------EIDPPAKY
Query: VERLVIQLMS--ATIASTKNLILISP---KVKNWYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIA
+ S A + + + SP + WY DSGA+NHVT E+ G + VGNG LKI + G+T L + LNL ++L+VP I
Subjt: VERLVIQLMS--ATIASTKNLILISP---KVKNWYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIA
Query: KNLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRR
KNL+SVSKL DNN+FVEF + C VKDK + QT+LKG LKDGLY L + + S NK+ +S K + HR+
Subjt: KNLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRR
Query: LGHSSSRIFYLITKGCNISFK-SDATEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVA
LGH ++++ + K CN+ SD FC ACQ GK H L F SS S + LIH+DVWGP +LS +GF+YYV F+DDFSR+ WI+PL+ K DT+ A
Subjt: LGHSSSRIFYLITKGCNISFK-SDATEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVA
Query: FEHFMQMMHTQFNSSIKAIQSD
F F + QFN IK IQ D
Subjt: FEHFMQMMHTQFNSSIKAIQSD
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A2K3LCM1 Gag/pol polyprotein-maize retrotransposon Hopscotch (Fragment) | 2.5e-78 | 32.91 | Show/hide |
Query: ANATNNFPA--ATRMPNFNSPP-LNQLLNQITTIKIEGYLLGHKICPPMFIRQNPSNASNETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLL
+N N+ P+ + ++ N P + +L I +++GY+LG K CP FI T +D +++ NPE+E W DQ L
Subjt: ANATNNFPA--ATRMPNFNSPP-LNQLLNQITTIKIEGYLLGHKICPPMFIRQNPSNASNETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLL
Query: LGWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALISQVLLGLDENYNAIV
LGWL NS+T IATQL+ E S LWD Q L G +R++ YL+ F TRKG M +YL MK ++ L AG+P + LI Q L GLD YN +V
Subjt: LGWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALISQVLLGLDENYNAIV
Query: ATLQRKPDISWLHHNTQ----RHKIRVAAEINTLNVEA----------------------------------------------------------ISVE
L + +SW+ Q ++I + L + A I+++
Subjt: ATLQRKPDISWLHHNTQ----RHKIRVAAEINTLNVEA----------------------------------------------------------ISVE
Query: IEVRAEEEIDPPAKYVERLVIQLMSATIASTKNLILISPKVKNWYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNL
R ++ +A +AS ++ + +WY DSGA+NHVT + +E+ G + VGNG L+I + G++ L + LNL
Subjt: IEVRAEEEIDPPAKYVERLVIQLMSATIASTKNLILISPKVKNWYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNL
Query: KNILHVPDIAKNLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINS
+IL+VP I KNL+SVSKLA DNN+ VEF E+ C VKDK + + +L+G LKDGLY L E +++ ++
Subjt: KNILHVPDIAKNLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINS
Query: AVTKTTSHRRLGHSSSRIFYLITKGCNISFK-SDATEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYP
K + HR+LGH ++++ ++ K CN+ SD FC ACQ GK H L F +S S A + EL+HTDVWGP ++SS+GF+YYV F+DDF+R+ WIYP
Subjt: AVTKTTSHRRLGHSSSRIFYLITKGCNISFK-SDATEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYP
Query: LRLKGDTMVAFEHFMQMMHTQFNSSIKAIQSD
L+ K DT AF F M+ QF+ IK IQ D
Subjt: LRLKGDTMVAFEHFMQMMHTQFNSSIKAIQSD
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| A0A2K3MUJ9 Putative retrotransposon Ty1-copia subclass protein (Fragment) | 1.3e-79 | 35.1 | Show/hide |
Query: NATNNFPA--ATRMPNFNSPPLNQL-LNQITTIKIEGYLLGHKICPPMFIRQNPSNASNETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLLL
N N+ P+ + ++ N P L L I K +GY+LG K CP F+ TSI TE INP+Y+ W DQ LL
Subjt: NATNNFPA--ATRMPNFNSPPLNQL-LNQITTIKIEGYLLGHKICPPMFIRQNPSNASNETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLLL
Query: GWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALISQVLLGLDENYNAIVA
GWL NS+T +IATQ++ E SK LWD Q L G +R+ YL+ F T K M +YL MK ++ L AGSP S L+ Q L GLD YN +V
Subjt: GWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALISQVLLGLDENYNAIVA
Query: TLQRKPDISWLHHNTQ----RHKIRVAAEINTLNVEAISVEIEVRAE---------------------------EEIDPPA------------------K
L + +ISW+ Q ++ N +N+ A S + E PP +
Subjt: TLQRKPDISWLHHNTQ----RHKIRVAAEINTLNVEAISVEIEVRAE---------------------------EEIDPPA------------------K
Query: YVERLVIQLMSATIASTKNLILISP---KVKNWYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAK
+ + + A + + + SP + WY DSGA+NHVT L E G + VGNG LKI + G+T L + +NL+N+L+VP+I K
Subjt: YVERLVIQLMSATIASTKNLILISP---KVKNWYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAK
Query: NLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRL
NL+SVSKL DNN VEF E+YC VKDK + + +LKG LKDGLY L +++ P N C + IS+ K HR+L
Subjt: NLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRL
Query: GHSSSRIFYLITKGCNISFK-SDATEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAF
GH ++++ + K N+ SD FC ACQ GK H L F +S S A + +LIHTDVWGP +LS + F+YYV FLDDFSR+ WI+PL+ K +T+ AF
Subjt: GHSSSRIFYLITKGCNISFK-SDATEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAF
Query: EHFMQMMHTQFNSSIKAIQSD
F ++ QFN IK I+ D
Subjt: EHFMQMMHTQFNSSIKAIQSD
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| A0A2K3NEN7 Copia-like polyprotein (Fragment) | 8.5e-79 | 34.73 | Show/hide |
Query: ANATNNFPA--ATRMPNFNSPPLNQL-LNQITTIKIEGYLLGHKICPPMFIRQNPSNASNETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLL
+N N+ P+ + ++ N P L L I K +GY+LG K CP F VT++D ++ +NP+++ W+ DQ L
Subjt: ANATNNFPA--ATRMPNFNSPPLNQL-LNQITTIKIEGYLLGHKICPPMFIRQNPSNASNETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLL
Query: LGWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALISQVLLGLDENYNAIV
LGWL NS+ +IATQL+ E SK LWD Q L G +++ YL+ F TRKG M EYL MK S+ L +GSP + L+ Q L GLD YN +V
Subjt: LGWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALISQVLLGLDENYNAIV
Query: ATLQRKPDISWLHHNTQRHKIRVAAEIN--------TLNVEA-ISVEIEVRAEE--------------------------------------EIDPPAKY
L + ++SW+ + Q + + ++ TLN A + + E R + +D ++
Subjt: ATLQRKPDISWLHHNTQRHKIRVAAEIN--------TLNVEA-ISVEIEVRAEE--------------------------------------EIDPPAKY
Query: VERLVIQLMS--ATIASTKNLILISP---KVKNWYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIA
+ S A + + + SP + WY DSGA+NHVT E+ G + VGNG LKI + G+T L + LNL ++L+VP I
Subjt: VERLVIQLMS--ATIASTKNLILISP---KVKNWYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIA
Query: KNLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRR
KNL+SVSKL DNN+FVEF + C VKDK + QT+LKG LKDGLY L + + S NK+ +S K + HR+
Subjt: KNLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRR
Query: LGHSSSRIFYLITKGCNISFK-SDATEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVA
LGH ++++ + K CN+ SD FC ACQ GK H L F SS S + LIH+DVWGP +LS +GF+YYV F+DDFSR+ WI+PL+ K DT+ A
Subjt: LGHSSSRIFYLITKGCNISFK-SDATEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVA
Query: FEHFMQMMHTQFNSSIKAIQSD
F F + QFN IK IQ D
Subjt: FEHFMQMMHTQFNSSIKAIQSD
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| A0A803PEH4 Uncharacterized protein | 2.3e-84 | 33.63 | Show/hide |
Query: ANATNNFPAATRMPNFNSPP-LNQLLN-------------QITTI----KIEGYLLGHKICPPMFIRQNPSNASNETSIAEASSSQVTTSDPVTFATTEI
A+++NN A+++PN +PP LNQ + ++TI ++ GYL G +CPP F V T++
Subjt: ANATNNFPAATRMPNFNSPP-LNQLLN-------------QITTI----KIEGYLLGHKICPPMFIRQNPSNASNETSIAEASSSQVTTSDPVTFATTEI
Query: INPEYEAWLVVDQLLLGWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALI
NPEYE W++ DQLL+GWLY+S+T IAT++MG + +L ++ L+G S+++ D R Q TRKG+ MSEYLR K SN L AG P P L+
Subjt: INPEYEAWLVVDQLLLGWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALI
Query: SQVLLGLDENYNAIVATLQRKPDISW---------------------LHHN---TQRHKIRVAAEINT--------------------LNVEAISVEIEV
+ VL GLD Y +IV ++ + + +W L+ N + + +AA+ N N S
Subjt: SQVLLGLDENYNAIVATLQRKPDISW---------------------LHHN---TQRHKIRVAAEINT--------------------LNVEAISVEIEV
Query: R-------AEEEIDPPAKYVERLVI-------------------QLMSATIASTKNLILISPKVKN---WYADSGATNHVTSDYTNLTHPTEYGGTKLVT
R + KY + Q + + + + +P+V W+ADSGA+NH+TSD NLT +Y G + V
Subjt: R-------AEEEIDPPAKYVERLVI-------------------QLMSATIASTKNLILISPKVKN---WYADSGATNHVTSDYTNLTHPTEYGGTKLVT
Query: VGNGNTLKIASVGNTVLT--NGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEET-TVASHDAVPVN
VGNG+ L+I +GN L +G +LL LK++L VP IAKNLVSVSKLA DNNV +EF+ ++CLVKDK +++ +L G LKD LY L+ T +SH N
Subjt: VGNGNTLKIASVGNTVLT--NGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEET-TVASHDAVPVN
Query: -SAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRLGHSSSRIFYLITKGCNISFKSDATE-FCHACQLGKSHRLLFSSSESRALKAFELIHTDV
+A + N+N+ +L S++ + HRRLGH S ++ + + N+S +A + C ACQ GK+H L F SS +RA +LIHTD+
Subjt: -SAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRLGHSSSRIFYLITKGCNISFKSDATE-FCHACQLGKSHRLLFSSSESRALKAFELIHTDV
Query: WGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAFEHFMQMMHTQFNSSIKAIQSDN
WGP + S+ YY+ F+DD+SRY W+YPL+LK D + AF F ++ QF IK+++SD+
Subjt: WGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAFEHFMQMMHTQFNSSIKAIQSDN
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| A0A803PM38 Uncharacterized protein | 2.5e-78 | 36.74 | Show/hide |
Query: INPEYEAWLVVDQLLLGWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALI
+NP +E W+V DQLLLGWLY S+T IA ++MG + S LW A++ELFG S+A+ D R Q RKG +M++YLR + ++ L AG P P L+
Subjt: INPEYEAWLVVDQLLLGWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALI
Query: SQVLLGLDENYNAIVATLQRKPDISW-------LHHNTQRHKIRVAAEINTLNVEAISVEIEV----------RAEEEIDPPAKYVERLVIQLMSATIAS
S VL GLD Y +V ++ + +W L +++ ++ + + L ++ + R + + S
Subjt: SQVLLGLDENYNAIVATLQRKPDISW-------LHHNTQRHKIRVAAEINTLNVEAISVEIEV----------RAEEEIDPPAKYVERLVIQLMSATIAS
Query: TKNLILISPKVKNWYADS-------GATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVG-NTVLTNGKHLLNLKNILHVPDIAKNLVSVSKLAKD
+ + +V Y S GA+NH+TS+ + EY G + VTV NGN L I +G ++ T L LK ILHVP I KNL+S+SKL D
Subjt: TKNLILISPKVKNWYADS-------GATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVG-NTVLTNGKHLLNLKNILHVPDIAKNLVSVSKLAKD
Query: NNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRLGHSSSRIFYLI
NNV VEF D C VKDK + Q VLKG LKDGLY + T ++ S +CP + + ES ++ + K HRRLGH S R+ +
Subjt: NNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRLGHSSSRIFYLI
Query: TKGCNISFKSDATEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAFEHFMQMMHTQFN
N+ + + FC ACQLGKSH L F + RA EL+HTD+WGP+ ++S+ FRYY+ F+DDFSRY WIYPL+ K + + AF F ++ QFN
Subjt: TKGCNISFKSDATEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAFEHFMQMMHTQFN
Query: SSIKAIQSD
S +K +Q+D
Subjt: SSIKAIQSD
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| SwissProt top hits | e value | %identity | Alignment |
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.9e-22 | 27.85 | Show/hide |
Query: ISPKVKNWYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGN-TVLTNGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFHEDYCL
+S W D+ A++H T +L G V +GN + KIA +G+ + TN L LK++ HVPD+ NL+S L +D ++ + L
Subjt: ISPKVKNWYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGN-TVLTNGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFHEDYCL
Query: VKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRLGHSSSRIFYLITKGCNISF-KSDA
K + KG + LY N+ C + E + IS++ H+R+GH S + ++ K IS+ K
Subjt: VKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRLGHSSSRIFYLITKGCNISF-KSDA
Query: TEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAFEHFMQMMHTQFNSSIKAIQSDN
+ C C GK HR+ F +S R L +L+++DV GP + S G +Y+V F+DD SR +W+Y L+ K F+ F ++ + +K ++SDN
Subjt: TEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAFEHFMQMMHTQFNSSIKAIQSDN
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| Q07791 Transposon Ty2-DR3 Gag-Pol polyprotein | 1.9e-11 | 26.09 | Show/hide |
Query: DSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFHEDYCLVKD--KGSEQT
DSGA+ + L H T +V + I ++GN LH P+IA +L+S+S+LA N C ++ + S+ T
Subjt: DSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFHEDYCLVKD--KGSEQT
Query: VLKGTLKDGLYH--LEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRLGHSSSR----------IFYLITKGCNISFKS
VL +K G ++ ++ + SH + + IN N+S S+N HR LGH++ R + YL K +I + +
Subjt: VLKGTLKDGLYH--LEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRLGHSSSR----------IFYLITKGCNISFKS
Query: DATEFCHACQLGKS--HRLLFSS--SESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPL--RLKGDTMVAFEHFMQMMHTQFNSSIK
+T C C +GKS HR + S + + F+ +HTD++GP L + Y++ F D+ +R+ W+YPL R + + F + + QFN+ +
Subjt: DATEFCHACQLGKS--HRLLFSS--SESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPL--RLKGDTMVAFEHFMQMMHTQFNSSIK
Query: AIQSDNES---NRYLAPFSGSR
IQ D S N+ L F +R
Subjt: AIQSDNES---NRYLAPFSGSR
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| Q12491 Transposon Ty2-B Gag-Pol polyprotein | 2.5e-11 | 26.09 | Show/hide |
Query: DSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFHEDYCLVKD--KGSEQT
DSGA+ + L H T +V + I ++GN LH P+IA +L+S+S+LA N C ++ + S+ T
Subjt: DSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFHEDYCLVKD--KGSEQT
Query: VLKGTLKDGLYH--LEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRLGHSSSR----------IFYLITKGCNISFKS
VL +K G ++ ++ + SH + + IN N+S S+N HR LGH++ R + YL K +I + +
Subjt: VLKGTLKDGLYH--LEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRLGHSSSR----------IFYLITKGCNISFKS
Query: DATEFCHACQLGKS--HRLLFSS--SESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPL--RLKGDTMVAFEHFMQMMHTQFNSSIK
+T C C +GKS HR + S + + F+ +HTD++GP L + Y++ F D+ +R+ W+YPL R + + F + + QFN+ +
Subjt: DATEFCHACQLGKS--HRLLFSS--SESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPL--RLKGDTMVAFEHFMQMMHTQFNSSIK
Query: AIQSDNES---NRYLAPFSGSR
IQ D S N+ L F +R
Subjt: AIQSDNES---NRYLAPFSGSR
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 5.0e-44 | 26.81 | Show/hide |
Query: TTSDPVTFATTEI--INPEYEAWLVVDQLLLGWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSN
TT P T T +NP+Y W D+L+ + +I+ + + + +W+ +++++ S LR +Q KG T+ +Y++ + +
Subjt: TTSDPVTFATTEI--INPEYEAWLVVDQLLLGWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSN
Query: NLGQAGSPGPSKALISQVLLGLDENYNAIVATLQRK---PDISWLHHNTQRHKIRV----AAEINTLNVEAIS----------------VEIEVRAEEEI
L G P + +VL L E Y ++ + K P ++ +H H+ ++ +A + + A+S + R
Subjt: NLGQAGSPGPSKALISQVLLGLDENYNAIVATLQRK---PDISWLHHNTQRHKIRV----AAEINTLNVEAIS----------------VEIEVRAEEEI
Query: DPP-------------------------------AKYVERLVIQLMSATIAS----------TKNLILISP-KVKNWYADSGATNHVTSDYTNLTHPTEY
P AK +L L S NL L SP NW DSGAT+H+TSD+ NL+ Y
Subjt: DPP-------------------------------AKYVERLVIQLMSATIAS----------TKNLILISP-KVKNWYADSGATNHVTSDYTNLTHPTEY
Query: GGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDA
G V V +G+T+ I+ G+T L+ LNL NIL+VP+I KNL+SV +L N V VEF VKD + +L+G KD LY E +AS +
Subjt: GGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDA
Query: VPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRLGHSSSRIFYLITKGCNISFKSDATEF--CHACQLGKSHRLLFSSSESRALKAFELI
PV+ A P +S T ++ H RLGH + I + ++S + + +F C C + KS+++ FS S + + E I
Subjt: VPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRLGHSSSRIFYLITKGCNISFKSDATEF--CHACQLGKSHRLLFSSSESRALKAFELI
Query: HTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAFEHFMQMMHTQFNSSIKAIQSDN
++DVW + +LS +RYYV+F+D F+RY W+YPL+ K F F ++ +F + I SDN
Subjt: HTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAFEHFMQMMHTQFNSSIKAIQSDN
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 5.4e-38 | 33.99 | Show/hide |
Query: NLILISP-KVKNWYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFHE
NL + SP NW DSGAT+H+TSD+ NL+ Y G V + +G+T+ I G+ L L+L +L+VP+I KNL+SV +L N V VEF
Subjt: NLILISP-KVKNWYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFHE
Query: DYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRLGHSSSRIFYLITKGCNISFK
VKD + +L+G KD LY E +AS AV + ++ C S T ++ H RLGH S I + ++
Subjt: DYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRLGHSSSRIFYLITKGCNISFK
Query: SDATEF--CHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAFEHFMQMMHTQFNSSIKAIQ
+ + + C C + KSH++ FS+S + K E I++DVW + +LS +RYYV+F+D F+RY W+YPL+ K F F ++ +F + I +
Subjt: SDATEF--CHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAFEHFMQMMHTQFNSSIKAIQ
Query: SDN
SDN
Subjt: SDN
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