CuGenDBv2

Gene ID	Clc01G16080
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	transmembrane protein 220
Genome location	ClcChr01:28901801..28904039
RNA-Seq Expression	Clc01G16080
Synteny	Clc01G16080
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR029377 - TMEM220 protein

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004141949.1 transmembrane protein 220 isoform X2 [Cucumis sativus]

5.8e-63

85.81

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Query:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK
        MATPSKLYSSCS+LMGFLFAYSTA+QFNDPDWYLWVP+YGCACAVNLLKW+V LEAMN V KA MG+GIC+W+KVVAEDYMNGIAGFLSLDLSERVVREK
Subjt:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK

Query:  TGSGLVVCSMILHLIAASSSSSLKIHRT--SKSKREFPRYLTYGRALL
        TGSGLVVCSMILHLIAASSSS  K+ RT  SKSKR FPR+LTYG A L
Subjt:  TGSGLVVCSMILHLIAASSSSSLKIHRT--SKSKREFPRYLTYGRALL

XP_008440175.1 PREDICTED: transmembrane protein 220 [Cucumis melo]

7.6e-63

85.62

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Query:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK
        MA PSKLYSSCS+LMGFLFAYSTA+QFNDPDWYLWVP+YGCACAVNLLKW+V LEAMN V KA MG+GIC+W+KVVAEDYMNGIAGFLSLDLSERVVREK
Subjt:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK

Query:  TGSGLVVCSMILHLIAASSSSSLKIHRTSKSKREFPRYLTYGRALL
        TGSGLVVCSMILHLIAASSSS  K+  TSKSKR FPR+LTYG A L
Subjt:  TGSGLVVCSMILHLIAASSSSSLKIHRTSKSKREFPRYLTYGRALL

XP_031742851.1 transmembrane protein 220 isoform X1 [Cucumis sativus]

2.0e-63

85.71

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Query:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK
        MATPSKLYSSCS+LMGFLFAYSTA+QFNDPDWYLWVP+YGCACAVNLLKW+V LEAMN V KA MG+GIC+W+KVVAEDYMNGIAGFLSLDLSERVVREK
Subjt:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK

Query:  TGSGLVVCSMILHLIAASSSSSLKIHRT--SKSKREFPRYLTYGRAL
        TGSGLVVCSMILHLIAASSSS  K+ RT  SKSKR FPR+LTYG+A+
Subjt:  TGSGLVVCSMILHLIAASSSSSLKIHRT--SKSKREFPRYLTYGRAL

XP_038881309.1 transmembrane protein 220 isoform X1 [Benincasa hispida]

1.5e-66

85.53

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Query:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK
        MATPSKLYS CSLLMGFLFAYSTA+QFNDPDWYLWVP+YGCACAVNLLKW V +EAM  V KATMG GIC+W+KVVAEDYMNGIAGFLSLDLSERVVREK
Subjt:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK

Query:  TGSGLVVCSMILHLIAA--SSSSSLKIHRTSKSKREFPRYLTYGRALLEPAL
        TGSGLVVCSMILHLIAA  SSSSS +IHRTSKSKREFPRYLTYG A+   +L
Subjt:  TGSGLVVCSMILHLIAA--SSSSSLKIHRTSKSKREFPRYLTYGRALLEPAL

XP_038881310.1 transmembrane protein 220 isoform X2 [Benincasa hispida]

3.3e-66

81.82

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Query:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK
        MATPSKLYS CSLLMGFLFAYSTA+QFNDPDWYLWVP+YGCACAVNLLKW V +EAM  V KATMG GIC+W+KVVAEDYMNGIAGFLSLDLSERVVREK
Subjt:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK

Query:  TGSGLVVCSMILHLIAA--SSSSSLKIHRTSKSKREFPRYLTYGRALLE------PALLLVPKFK
        TGSGLVVCSMILHLIAA  SSSSS +IHRTSKSKREFPRYLTYG A L       P   LV K K
Subjt:  TGSGLVVCSMILHLIAA--SSSSSLKIHRTSKSKREFPRYLTYGRALLE------PALLLVPKFK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KI28 Uncharacterized protein

2.8e-63

85.81

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Query:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK
        MATPSKLYSSCS+LMGFLFAYSTA+QFNDPDWYLWVP+YGCACAVNLLKW+V LEAMN V KA MG+GIC+W+KVVAEDYMNGIAGFLSLDLSERVVREK
Subjt:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK

Query:  TGSGLVVCSMILHLIAASSSSSLKIHRT--SKSKREFPRYLTYGRALL
        TGSGLVVCSMILHLIAASSSS  K+ RT  SKSKR FPR+LTYG A L
Subjt:  TGSGLVVCSMILHLIAASSSSSLKIHRT--SKSKREFPRYLTYGRALL

A0A1S3B186 transmembrane protein 220

3.7e-63

85.62

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Query:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK
        MA PSKLYSSCS+LMGFLFAYSTA+QFNDPDWYLWVP+YGCACAVNLLKW+V LEAMN V KA MG+GIC+W+KVVAEDYMNGIAGFLSLDLSERVVREK
Subjt:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK

Query:  TGSGLVVCSMILHLIAASSSSSLKIHRTSKSKREFPRYLTYGRALL
        TGSGLVVCSMILHLIAASSSS  K+  TSKSKR FPR+LTYG A L
Subjt:  TGSGLVVCSMILHLIAASSSSSLKIHRTSKSKREFPRYLTYGRALL

A0A5D3CNK6 Transmembrane protein 220

3.7e-63

85.62

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Query:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK
        MA PSKLYSSCS+LMGFLFAYSTA+QFNDPDWYLWVP+YGCACAVNLLKW+V LEAMN V KA MG+GIC+W+KVVAEDYMNGIAGFLSLDLSERVVREK
Subjt:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK

Query:  TGSGLVVCSMILHLIAASSSSSLKIHRTSKSKREFPRYLTYGRALL
        TGSGLVVCSMILHLIAASSSS  K+  TSKSKR FPR+LTYG A L
Subjt:  TGSGLVVCSMILHLIAASSSSSLKIHRTSKSKREFPRYLTYGRALL

A0A6J1HG20 uncharacterized protein LOC111463236

2.2e-55

75.34

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Query:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK
        MATPSKLYS CSLLM FLFAYSTA+QFNDPDWYLW+P+YGCACAVNLL WDV L+ +  + KAT+GLGIC+W+KVVAED++NGIAGFLSLDLSERVVREK
Subjt:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK

Query:  TGSGLVVCSMILHLIAASSSSSLKIHRTSKSKREFPRYLTYGRALL
        TGSGLVV SM+LHLIA SSSS     RT K +R F RY++YG A L
Subjt:  TGSGLVVCSMILHLIAASSSSSLKIHRTSKSKREFPRYLTYGRALL

A0A6J1KP55 uncharacterized protein LOC111497019

1.1e-54

75.34

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Query:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK
        MATPSKLYS CSLLM FLFAYSTA+QFNDPDWYLW+P+YGCACAVNLL WDV LE +  V KAT+GLGIC+W+KVVAED+++GIAGFLSLDLSERVVREK
Subjt:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK

Query:  TGSGLVVCSMILHLIAASSSSSLKIHRTSKSKREFPRYLTYGRALL
        TGSGLVV SM+LHLIA SSSS     RT K +R F RY+++G A L
Subjt:  TGSGLVVCSMILHLIAASSSSSLKIHRTSKSKREFPRYLTYGRALL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G23755.1 unknown protein

3.4e-29

52.89

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Query:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK
        MA P  L+  CSLLM FLFAYS ++Q NDPDWY W P+Y  AC VNL+ +   ++ M  + +  + LG+ + +KV+AED +    G LSLDL+ RVVREK
Subjt:  MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREK

Query:  TGSGLVVCSMILHLIAASSSS
         GSGLV+ SM+L L A+SSSS
Subjt:  TGSGLVVCSMILHLIAASSSS

Sequences

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CDS sequence

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ATGGCAACACCCTCCAAATTATACAGCAGCTGCTCTCTGCTAATGGGGTTTTTGTTTGCTTATTCCACAGCTCTTCAGTTTAACGATCCTGATTGGTATTTATGGGTTCC
AGTTTATGGGTGTGCTTGTGCTGTGAATCTTCTCAAATGGGATGTCTTCTTAGAAGCCATGAATCAAGTTGGTAAGGCAACAATGGGACTTGGAATATGTATGTGGATGA
AGGTGGTAGCAGAGGATTATATGAATGGTATTGCAGGTTTTCTCTCCCTAGATTTAAGTGAGAGAGTAGTGAGGGAGAAAACAGGAAGTGGGTTGGTTGTGTGTTCCATG
ATTTTACATCTGATAGCTGCATCATCATCATCATCCCTAAAAATTCACAGAACAAGTAAAAGTAAAAGGGAATTTCCAAGGTATCTCACATATGGGCGTGCACTCTTGGA
ACCTGCCTTGCTTCTCGTTCCAAAATTTAAAGCTCCAGATCTTTTTCCCTCAAATGGTAGGCTGTACATGTTCTTCAAATGTGGCCTCAGCAACTTGAAGATTCACAGCC
ATTTCCTCCGGGCAGTAGCTCGCGTCGATAGTTAA

mRNA sequence

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TTGTTGTTCGATCAGATAAGGTTTGAAAAAATAAGTGAAAATGGCAACACCCTCCAAATTATACAGCAGCTGCTCTCTGCTAATGGGGTTTTTGTTTGCTTATTCCACAG
CTCTTCAGTTTAACGATCCTGATTGGTATTTATGGGTTCCAGTTTATGGGTGTGCTTGTGCTGTGAATCTTCTCAAATGGGATGTCTTCTTAGAAGCCATGAATCAAGTT
GGTAAGGCAACAATGGGACTTGGAATATGTATGTGGATGAAGGTGGTAGCAGAGGATTATATGAATGGTATTGCAGGTTTTCTCTCCCTAGATTTAAGTGAGAGAGTAGT
GAGGGAGAAAACAGGAAGTGGGTTGGTTGTGTGTTCCATGATTTTACATCTGATAGCTGCATCATCATCATCATCCCTAAAAATTCACAGAACAAGTAAAAGTAAAAGGG
AATTTCCAAGGTATCTCACATATGGGCGTGCACTCTTGGAACCTGCCTTGCTTCTCGTTCCAAAATTTAAAGCTCCAGATCTTTTTCCCTCAAATGGTAGGCTGTACATG
TTCTTCAAATGTGGCCTCAGCAACTTGAAGATTCACAGCCATTTCCTCCGGGCAGTAGCTCGCGTCGATAGTTAA

Protein sequence

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MATPSKLYSSCSLLMGFLFAYSTALQFNDPDWYLWVPVYGCACAVNLLKWDVFLEAMNQVGKATMGLGICMWMKVVAEDYMNGIAGFLSLDLSERVVREKTGSGLVVCSM
ILHLIAASSSSSLKIHRTSKSKREFPRYLTYGRALLEPALLLVPKFKAPDLFPSNGRLYMFFKCGLSNLKIHSHFLRAVARVDS

Clc01G16080 (gene) of Watermelon (cordophanus) v2 genome