CuGenDBv2

Gene ID	Clc01G16180
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	SHR-BD domain-containing protein
Genome location	ClcChr01:29020022..29020722
RNA-Seq Expression	Clc01G16180
Synteny	Clc01G16180
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR026847 - Vacuolar protein sorting-associated protein 13

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7034374.1 vps13a [Cucurbita argyrosperma subsp. argyrosperma]

2.1e-47

86.61

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Query:  EWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKESNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPIVRRIVSG
        EWKIGPTV TLCEHLFVSFAIR+LRKGV +IVVRIP NKESNSD QE+NLSLVPTGK  KGKFIWTMGIGKFMLSG+LAYIDG LCRNIP PI RRIVSG
Subjt:  EWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKESNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPIVRRIVSG

Query:  FLLSLLDNNDKE
        FLL+LLD+NDKE
Subjt:  FLLSLLDNNDKE

XP_022977391.1 uncharacterized protein LOC111477741 isoform X1 [Cucurbita maxima]

2.1e-47

86.61

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Query:  EWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKESNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPIVRRIVSG
        EWKIGPTV TLCEHLFVSFAIR+LRKGV +IVVRIP NKESNSD QE+NLSLVPTGK  KGKFIWTMGIGKFMLSG+LAYIDG LCRNIP PI RRIVSG
Subjt:  EWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKESNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPIVRRIVSG

Query:  FLLSLLDNNDKE
        FLL+LLD+NDKE
Subjt:  FLLSLLDNNDKE

XP_038880802.1 uncharacterized protein LOC120072502 isoform X1 [Benincasa hispida]

3.0e-49

88.39

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Query:  EWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKESNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPIVRRIVSG
        EWKIGPTV TLCEHLFVSFAIR+LRKGV +IVVRIP NKESNSD+QETNL+LVPTGK PKGKFIWT GIGKFMLSGI+AYIDG LCRNIP PIVRRIVSG
Subjt:  EWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKESNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPIVRRIVSG

Query:  FLLSLLDNNDKE
        FLL+LLDNNDKE
Subjt:  FLLSLLDNNDKE

XP_038880803.1 uncharacterized protein LOC120072502 isoform X2 [Benincasa hispida]

3.0e-49

88.39

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Query:  EWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKESNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPIVRRIVSG
        EWKIGPTV TLCEHLFVSFAIR+LRKGV +IVVRIP NKESNSD+QETNL+LVPTGK PKGKFIWT GIGKFMLSGI+AYIDG LCRNIP PIVRRIVSG
Subjt:  EWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKESNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPIVRRIVSG

Query:  FLLSLLDNNDKE
        FLL+LLDNNDKE
Subjt:  FLLSLLDNNDKE

XP_038880804.1 uncharacterized protein LOC120072502 isoform X3 [Benincasa hispida]

3.0e-49

88.39

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Query:  EWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKESNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPIVRRIVSG
        EWKIGPTV TLCEHLFVSFAIR+LRKGV +IVVRIP NKESNSD+QETNL+LVPTGK PKGKFIWT GIGKFMLSGI+AYIDG LCRNIP PIVRRIVSG
Subjt:  EWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKESNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPIVRRIVSG

Query:  FLLSLLDNNDKE
        FLL+LLDNNDKE
Subjt:  FLLSLLDNNDKE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KJC9 Uncharacterized protein

2.6e-43

80.36

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Query:  EWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKESNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPIVRRIVSG
        EWKIGPT+LTL EHL VSFAIRILRKGV +IVVRIP NKES SDS++T+L+LVPT + PK KFIWTMGIGKFML+GILAY+DG LCR IP PI+RRIVSG
Subjt:  EWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKESNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPIVRRIVSG

Query:  FLLSLLDNNDKE
        FLL+LLDNNDKE
Subjt:  FLLSLLDNNDKE

A0A6J1BTB2 uncharacterized protein LOC111005570 isoform X3

2.6e-43

81.25

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Query:  EWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKESNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPIVRRIVSG
        EWKIGPTV TLCEHLFVSFAIR+LRKGV++IVVRIP NKESNSD + T L+LVP GK   GKFIW+MGIGKFMLSGILAYIDG LCRNIP PI+RRIVSG
Subjt:  EWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKESNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPIVRRIVSG

Query:  FLLSLLDNNDKE
        FLL+LLDNN  E
Subjt:  FLLSLLDNNDKE

A0A6J1BU46 uncharacterized protein LOC111005570 isoform X1

2.6e-43

81.25

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Query:  EWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKESNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPIVRRIVSG
        EWKIGPTV TLCEHLFVSFAIR+LRKGV++IVVRIP NKESNSD + T L+LVP GK   GKFIW+MGIGKFMLSGILAYIDG LCRNIP PI+RRIVSG
Subjt:  EWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKESNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPIVRRIVSG

Query:  FLLSLLDNNDKE
        FLL+LLDNN  E
Subjt:  FLLSLLDNNDKE

A0A6J1GDG3 uncharacterized protein LOC111453187 isoform X1

1.9e-46

84.82

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Query:  EWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKESNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPIVRRIVSG
        EWKIGPTV TLCEHLFVSFAIR+LRKGV +IVVRIP NKESN D  E+NLSLVPTGK  KGKFIWTMGIGKFMLSG+LAYIDG LCRNIP PI RRIVSG
Subjt:  EWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKESNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPIVRRIVSG

Query:  FLLSLLDNNDKE
        FLL+LLD+NDKE
Subjt:  FLLSLLDNNDKE

A0A6J1IJS2 uncharacterized protein LOC111477741 isoform X1

1.0e-47

86.61

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Query:  EWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKESNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPIVRRIVSG
        EWKIGPTV TLCEHLFVSFAIR+LRKGV +IVVRIP NKESNSD QE+NLSLVPTGK  KGKFIWTMGIGKFMLSG+LAYIDG LCRNIP PI RRIVSG
Subjt:  EWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKESNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPIVRRIVSG

Query:  FLLSLLDNNDKE
        FLL+LLD+NDKE
Subjt:  FLLSLLDNNDKE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G50380.1 Protein of unknown function (DUF1162)

8.6e-31

55.46

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Query:  QEWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKE------SNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPI
        +EWKIGPTVLTLCEHLFVSFAIRIL++   + +  +   KE      S+S S    + +V   K  K KF+W  GIG F+ SGI+AYIDG LCR IP PI
Subjt:  QEWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKE------SNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPI

Query:  VRRIVSGFLLSLLDNNDKE
         RRIVSGFLLS LD + ++
Subjt:  VRRIVSGFLLSLLDNNDKE

Sequences

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CDS sequence

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mRNA sequence

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atgttttctgaacttttctttcaggaatggaagattgggcctacagtgctaacgctctgtgaacacctctttgtaagttttgcaatccgtatactgagaaaaggt
gtcgcacggattgtagtcaggattccttggaacaaagaatcaaactctgatagtcaagaaaccaatctttcattagttccgactggcaaggtaccgaaaggtaag
ttcatctggactatgggaattggcaagtttatgctctctggtatcttagcatatattgatggtacgttgtgccgtaatatcccttgtcctattgtacggcggatt
gtaagcggctttctgttgagtctccttgacaataatgacaaggaataattttgttgtctgttctatatctgtgcaatgtatatcttttgtgatcaaaacagattt
atctgctacataatgattaaatattgagaaaggttatctcaaaagcagtgtagatcttaaaggtaactaaacaggttgattggcaagacatcaaattttggaata
tatcattaaaccttcttgatatggccacacagaatctaaagtagactagagaaaggtttccaactaagtaggatggtagtagatattgtcgattgtctatacttt
caatttgctattgttaaattacaaacattgggttggtcattgattcattgggttggtcattgattcattgg

Protein sequence

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MFSELFFQEWKIGPTVLTLCEHLFVSFAIRILRKGVARIVVRIPWNKESNSDSQETNLSLVPTGKVPKGKFIWTMGIGKFMLSGILAYIDGTLCRNIPCPIVRRI
VSGFLLSLLDNNDKE

Clc01G16180 (gene) of Watermelon (cordophanus) v2 genome