; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G16190 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G16190
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionSHR-BD domain-containing protein
Genome locationClcChr01:29022370..29023605
RNA-Seq ExpressionClc01G16190
SyntenyClc01G16190
Gene Ontology termsGO:0006623 - protein targeting to vacuole (biological process)
GO:0045053 - protein retention in Golgi apparatus (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0019898 - extrinsic component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006338248.1 PREDICTED: uncharacterized protein LOC102601421 isoform X1 [Solanum tuberosum]6.0e-0994.44Show/hide
Query:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
        +LYIEGYLQAMLDT+YKQEYLRVRVIDNQVILKNLP
Subjt:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
XP_010316168.1 uncharacterized protein LOC101257436 isoform X2 [Solanum lycopersicum]6.0e-0994.44Show/hide
Query:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
        +LYIEGYLQAMLDT+YKQEYLRVRVIDNQVILKNLP
Subjt:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
XP_022132799.1 uncharacterized protein LOC111005570 isoform X1 [Momordica charantia]3.5e-0994.44Show/hide
Query:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
        +LY+EGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
Subjt:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
XP_022132800.1 uncharacterized protein LOC111005570 isoform X2 [Momordica charantia]3.5e-0994.44Show/hide
Query:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
        +LY+EGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
Subjt:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
XP_022132801.1 uncharacterized protein LOC111005570 isoform X3 [Momordica charantia]3.5e-0994.44Show/hide
Query:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
        +LY+EGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
Subjt:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
TrEMBL top hitse value%identityAlignment
A0A0V0J1S7 Putative ovule protein2.9e-0994.44Show/hide
Query:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
        +LYIEGYLQAMLDT+YKQEYLRVRVIDNQVILKNLP
Subjt:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
A0A2G2XIL4 SHR-BD domain-containing protein2.9e-0994.44Show/hide
Query:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
        +LYIEGYLQAMLDT+YKQEYLRVRVIDNQVILKNLP
Subjt:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
A0A6J1BTB2 uncharacterized protein LOC111005570 isoform X31.7e-0994.44Show/hide
Query:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
        +LY+EGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
Subjt:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
A0A6J1BTH4 uncharacterized protein LOC111005570 isoform X21.7e-0994.44Show/hide
Query:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
        +LY+EGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
Subjt:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
A0A6J1BU46 uncharacterized protein LOC111005570 isoform X11.7e-0994.44Show/hide
Query:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
        +LY+EGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
Subjt:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G50380.1 Protein of unknown function (DUF1162)1.4e-1186.11Show/hide
Query:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
        +LYIEGYLQAMLDTMY+QEYLRV+VID+QV LKNLP
Subjt:  KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
atgcgacgtccaacgagagtttcgagtgatcagtggcaatggcgaacgaacggcgataatagatcggcggcggcaacagcaattgtaatttttggggagaagcataaata
taacttcttttatcttaagttatatattgaaggctacctgcaagctatgctggatacaatgtacaaacaagaatatcttagagttagagtcattgacaatcaggttatcc
taaaaaatcttccccaaacactcgtctggtaa
mRNA sequenceShow/hide mRNA sequence
atgcgacgtccaacgagagtttcgagtgatcagtggcaatggcgaacgaacggcgataatagatcggcggcggcaacagcaattgtaatttttggggagaagcataaata
taacttcttttatcttaagttatatattgaaggctacctgcaagctatgctggatacaatgtacaaacaagaatatcttagagttagagtcattgacaatcaggttatcc
taaaaaatcttccccaaacactcgtctggtaa
Protein sequenceShow/hide protein sequence
MRRPTRVSSDQWQWRTNGDNRSAAATAIVIFGEKHKYNFFYLKLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLPQTLVW