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Clc01G16220 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G16220
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionVPS13_C domain-containing protein
Genome locationClcChr01:29035911..29037134
RNA-Seq ExpressionClc01G16220
SyntenyClc01G16220
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR026847 - Vacuolar protein sorting-associated protein 13


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647487.1 hypothetical protein Csa_002891 [Cucumis sativus]4.2e-1468.57Show/hide
Query:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE
        FAAITEISDSVLKGAEASGF+GMV  F+          K +MEPS+L SVL+QGG  R+IKLDQSPGVDE
Subjt:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE
XP_011657817.1 uncharacterized protein LOC101222087 isoform X1 [Cucumis sativus]4.2e-1468.57Show/hide
Query:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE
        FAAITEISDSVLKGAEASGF+GMV  F+          K +MEPS+L SVL+QGG  R+IKLDQSPGVDE
Subjt:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE
XP_038880802.1 uncharacterized protein LOC120072502 isoform X1 [Benincasa hispida]5.4e-1470Show/hide
Query:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE
        FAAITEISDSVLKGAEASGF+GMV  F+          K +MEPSLL SVL+QGG +R IKLDQSPGVDE
Subjt:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE
XP_038880803.1 uncharacterized protein LOC120072502 isoform X2 [Benincasa hispida]5.4e-1470Show/hide
Query:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE
        FAAITEISDSVLKGAEASGF+GMV  F+          K +MEPSLL SVL+QGG +R IKLDQSPGVDE
Subjt:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE
XP_038880804.1 uncharacterized protein LOC120072502 isoform X3 [Benincasa hispida]5.4e-1470Show/hide
Query:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE
        FAAITEISDSVLKGAEASGF+GMV  F+          K +MEPSLL SVL+QGG +R IKLDQSPGVDE
Subjt:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE
TrEMBL top hitse value%identityAlignment
A0A0A0KJC9 Uncharacterized protein2.0e-1468.57Show/hide
Query:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE
        FAAITEISDSVLKGAEASGF+GMV  F+          K +MEPS+L SVL+QGG  R+IKLDQSPGVDE
Subjt:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE
A0A1S3B0I1 uncharacterized protein LOC103484730 isoform X17.7e-1468.57Show/hide
Query:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE
        FAAITEISDSVLKGAEASGF+GMV  F+          K +MEPSLL SV++QGG  R IKLDQSPGVDE
Subjt:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE
A0A1S3B161 uncharacterized protein LOC103484730 isoform X27.7e-1468.57Show/hide
Query:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE
        FAAITEISDSVLKGAEASGF+GMV  F+          K +MEPSLL SV++QGG  R IKLDQSPGVDE
Subjt:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE
A0A5D3CM78 Uncharacterized protein7.7e-1468.57Show/hide
Query:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE
        FAAITEISDSVLKGAEASGF+GMV  F+          K +MEPSLL SV++QGG  R IKLDQSPGVDE
Subjt:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE
A0A6J1IJS2 uncharacterized protein LOC111477741 isoform X12.9e-1367.14Show/hide
Query:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE
        FAAITEISDSVLKGAEASGFSGMV  F+          K +MEPSLL S L+QGG +R IKLD+SPG DE
Subjt:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G50380.1 Protein of unknown function (DUF1162)9.3e-1248.57Show/hide
Query:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE
        F A+TEISDSVL+GAE  G  G+V  F+          K +MEPS++ + L++GG +R IKLD++PG+DE
Subjt:  FAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTATGGTTTGCTGCTATAACTGAAATTTCAGACTCTGTTCTCAAGGGAGCAGAAGCAAGTGGTTTTAGTGGAATGGTAGAACCTTTCTATTCAAGTGAATGGATTTC
ACCAAGGAATACTAAAGATAGCATGGAGCCATCTTTACTTAGGAGTGTTTTGTTGCAAGGTGGCCAAAATAGATATATCAAACTTGATCAAAGCCCAGGGGTTGATGAGT
TTTTGGGATGCTTCGACTTCCAAAGGTTCTGCAGAAGAGAGCACTTCTCTCTCTGTCTAACTGATCACATGTTCTACTGTCTTGCTGACTTGATAAGGCAAAAGAATTTC
AATGGTCACCCTCATATCCCGCTCAATTCTGTCCTTGTCATCGACTCTTTCACACTGATCCTTCTTCCTCCATTTTGGCTCCCCGGGTTTGTTAGCTTTGTTTTCAACGC
ACAATATGTCATAGGAGATGCCAAAGATTTGTACACTCCAAAAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTATGGTTTGCTGCTATAACTGAAATTTCAGACTCTGTTCTCAAGGGAGCAGAAGCAAGTGGTTTTAGTGGAATGGTAGAACCTTTCTATTCAAGTGAATGGATTTC
ACCAAGGAATACTAAAGATAGCATGGAGCCATCTTTACTTAGGAGTGTTTTGTTGCAAGGTGGCCAAAATAGATATATCAAACTTGATCAAAGCCCAGGGGTTGATGAGT
TTTTGGGATGCTTCGACTTCCAAAGGTTCTGCAGAAGAGAGCACTTCTCTCTCTGTCTAACTGATCACATGTTCTACTGTCTTGCTGACTTGATAAGGCAAAAGAATTTC
AATGGTCACCCTCATATCCCGCTCAATTCTGTCCTTGTCATCGACTCTTTCACACTGATCCTTCTTCCTCCATTTTGGCTCCCCGGGTTTGTTAGCTTTGTTTTCAACGC
ACAATATGTCATAGGAGATGCCAAAGATTTGTACACTCCAAAAGAATGA
Protein sequenceShow/hide protein sequence
MLWFAAITEISDSVLKGAEASGFSGMVEPFYSSEWISPRNTKDSMEPSLLRSVLLQGGQNRYIKLDQSPGVDEFLGCFDFQRFCRREHFSLCLTDHMFYCLADLIRQKNF
NGHPHIPLNSVLVIDSFTLILLPPFWLPGFVSFVFNAQYVIGDAKDLYTPKE