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Clc01G16295 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G16295
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description30S ribosomal protein S3, chloroplastic
Genome locationClcChr01:29109094..29111338
RNA-Seq ExpressionClc01G16295
SyntenyClc01G16295
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR001351 - Ribosomal protein S3, C-terminal
IPR036419 - Ribosomal protein S3, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
YP_009346519.1 ribosomal protein S3 [Cucumis x hytivus]1.3e-1581.25Show/hide
Query:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
        ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYGVLG+ IWIFVDEQ
Subjt:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
YP_009447489.1 ribosomal protein S3 [Cucurbita maxima]1.3e-1581.25Show/hide
Query:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
        ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYGVLG+ IWIFVDEQ
Subjt:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
YP_009751776.1 ribosomal protein S3 [Herpetospermum pedunculosum]1.3e-1581.25Show/hide
Query:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
        ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYGVLG+ IWIFVDEQ
Subjt:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
YP_009752281.1 ribosomal protein S3 [Trichosanthes baviensis]1.3e-1581.25Show/hide
Query:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
        ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYGVLG+ IWIFVDEQ
Subjt:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
YP_009752619.1 ribosomal protein S3 [Trichosanthes homophylla]1.3e-1581.25Show/hide
Query:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
        ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYGVLG+ IWIFVDEQ
Subjt:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
TrEMBL top hitse value%identityAlignment
A0A1P8LEA6 30S ribosomal protein S3, chloroplastic6.5e-1681.25Show/hide
Query:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
        ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYGVLG+ IWIFVDEQ
Subjt:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
A0A1S4EU44 30S ribosomal protein S3, chloroplastic6.5e-1681.25Show/hide
Query:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
        ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYGVLG+ IWIFVDEQ
Subjt:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
A0A249RZG7 30S ribosomal protein S3, chloroplastic6.5e-1681.25Show/hide
Query:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
        ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYGVLG+ IWIFVDEQ
Subjt:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
A0A6H0ESU0 30S ribosomal protein S3, chloroplastic6.5e-1681.25Show/hide
Query:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
        ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYGVLG+ IWIFVDEQ
Subjt:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
A0A6M3RWJ0 30S ribosomal protein S3, chloroplastic6.5e-1681.25Show/hide
Query:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
        ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYGVLG+ IWIFVDEQ
Subjt:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
SwissProt top hitse value%identityAlignment
A1EA47 30S ribosomal protein S3, chloroplastic4.8e-1675Show/hide
Query:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
        ++I R + IK+GR+PLQTIRA+IDYCCYP+RTIYGVLGV IWIFVDE+
Subjt:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
A8Y9C5 30S ribosomal protein S3, chloroplastic4.8e-1675Show/hide
Query:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
        ++I R + IK+GR+PLQTIRA+IDYCCYP+RTIYGVLGV IWIFVDE+
Subjt:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
Q332T8 30S ribosomal protein S3, chloroplastic4.8e-1676.09Show/hide
Query:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVD
        ++I R +WI+EGRVPLQTIRA+IDYCCY VRTIYGVLG+ IWIF+D
Subjt:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVD
Q4VZN0 30S ribosomal protein S3, chloroplastic2.3e-1879.17Show/hide
Query:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
        ++I R +WI+EGRVPLQTIRA+IDYCCYPVRTIYG+LG+ IWIFVDEQ
Subjt:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
Q6END5 30S ribosomal protein S3, chloroplastic4.8e-1675Show/hide
Query:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
        ++I R + IK+GR+PLQTIRA+IDYCCYP+RTIYGVLGV IWIFVDE+
Subjt:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
Arabidopsis top hitse value%identityAlignment
ATCG00800.1 structural constituent of ribosome1.3e-1672.92Show/hide
Query:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ
        ++I R +WI+EGRVPLQTI A+IDYC Y VRTIYGVLG+ IWIFVDE+
Subjt:  EQIVRFKWIKEGRVPLQTIRAEIDYCCYPVRTIYGVLGVNIWIFVDEQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATGGCAGCTGACATCAATGGCCACCGGGTTTATAATTCTTTCTGCCGACTGCAACTAATTGATCACTGGCTGCTTCAATATGTTGAACTTTATGCACATTGTGC
CGTCCTCTTTTTCATTTTCCTTAGTGCACGGGATACTATTATAATGAATGAGAGCAGCTGTCCTATCTTTGCAATGGACCTTGGTTCTTTCTTTCCATCAACGAGCTCTG
ATTCGGACACCCTGCTTATCGTAGAACAAATTGTACGTTTCAAATGGATCAAAGAAGGAAGGGTTCCTCTACAAACCATTCGAGCTGAAATTGATTATTGTTGCTATCCA
GTTCGAACTATCTATGGGGTATTAGGCGTAAACATTTGGATATTTGTAGACGAACAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATGGCAGCTGACATCAATGGCCACCGGGTTTATAATTCTTTCTGCCGACTGCAACTAATTGATCACTGGCTGCTTCAATATGTTGAACTTTATGCACATTGTGC
CGTCCTCTTTTTCATTTTCCTTAGTGCACGGGATACTATTATAATGAATGAGAGCAGCTGTCCTATCTTTGCAATGGACCTTGGTTCTTTCTTTCCATCAACGAGCTCTG
ATTCGGACACCCTGCTTATCGTAGAACAAATTGTACGTTTCAAATGGATCAAAGAAGGAAGGGTTCCTCTACAAACCATTCGAGCTGAAATTGATTATTGTTGCTATCCA
GTTCGAACTATCTATGGGGTATTAGGCGTAAACATTTGGATATTTGTAGACGAACAATAA
Protein sequenceShow/hide protein sequence
MKMAADINGHRVYNSFCRLQLIDHWLLQYVELYAHCAVLFFIFLSARDTIIMNESSCPIFAMDLGSFFPSTSSDSDTLLIVEQIVRFKWIKEGRVPLQTIRAEIDYCCYP
VRTIYGVLGVNIWIFVDEQ