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Clc01G16470 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G16470
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
Genome locationClcChr01:29250220..29254655
RNA-Seq ExpressionClc01G16470
SyntenyClc01G16470
Gene Ontology termsGO:0042773 - ATP synthesis coupled electron transport (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function)
GO:0048038 - quinone binding (molecular function)
InterPro domainsIPR001750 - NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
APW82680.1 NADH dehydrogenase subunit 5 [Citrullus lanatus subsp. vulgaris]3.8e-4090.74Show/hide
Query:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII
        GSFEFRDL +IFNNLIDNNEVNFLFVTLCAVLLFAGAVAK  QFPLHVWL DAMEGPTPIS LIHAATMVAA IFLVARLL LF+VIPYIMNLIALIGII
Subjt:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII

Query:  KVLFGATL
         VLFGATL
Subjt:  KVLFGATL

QZL38642.1 NADH dehydrogenase subunit F [Citrullus naudinianus]1.0e-4092.59Show/hide
Query:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII
        GSFEFRDL KIFNNLIDNNEVNFLFVTLCAVLLFAGAVAK  QFPLHVWL DAMEGPTPIS LIHAATMVAA IFLVARLL LFIVIPYIMNLIALIGII
Subjt:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII

Query:  KVLFGATL
         VLFGATL
Subjt:  KVLFGATL

QZL38730.1 NADH dehydrogenase subunit F [Citrullus ecirrhosus]1.3e-4091.67Show/hide
Query:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII
        GSFEFRDL KIFNNLIDNNEVNFLFVTLCAVLLFAGAVAK  QFPLHVWL DAMEGPTPIS LIHAATMVAA IFLVARLL LF+VIPYIMNLIALIGII
Subjt:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII

Query:  KVLFGATL
         VLFGATL
Subjt:  KVLFGATL

YP_009326037.1 NADH dehydrogenase subunit 5 [Citrullus lanatus]3.8e-4090.74Show/hide
Query:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII
        GSFEFRDL +IFNNLIDNNEVNFLFVTLCAVLLFAGAVAK  QFPLHVWL DAMEGPTPIS LIHAATMVAA IFLVARLL LF+VIPYIMNLIALIGII
Subjt:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII

Query:  KVLFGATL
         VLFGATL
Subjt:  KVLFGATL

YP_010131151.1 NADH-plastoquinone oxidoreductase subunit 5 [Benincasa hispida]3.8e-4090.74Show/hide
Query:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII
        GSFEFRDL +IFNNLIDNNEVNFLFVTLCAVLLFAGAVAK  QFPLHVWL DAMEGPTPIS LIHAATMVAA IFLVARLL LFI+IPYIMNLIALIGII
Subjt:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII

Query:  KVLFGATL
         VLFGATL
Subjt:  KVLFGATL

TrEMBL top hitse value%identityAlignment
A0A1P8LEA9 NAD(P)H dehydrogenase subunit 51.9e-4090.74Show/hide
Query:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII
        GSFEFRDL +IFNNLIDNNEVNFLFVTLCAVLLFAGAVAK  QFPLHVWL DAMEGPTPIS LIHAATMVAA IFLVARLL LF+VIPYIMNLIALIGII
Subjt:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII

Query:  KVLFGATL
         VLFGATL
Subjt:  KVLFGATL

A0A1P8LET2 NAD(P)H dehydrogenase subunit 51.9e-4090.74Show/hide
Query:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII
        GSFEFRDL +IFNNLIDNNEVNFLFVTLCAVLLFAGAVAK  QFPLHVWL DAMEGPTPIS LIHAATMVAA IFLVARLL LF+VIPYIMNLIALIGII
Subjt:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII

Query:  KVLFGATL
         VLFGATL
Subjt:  KVLFGATL

A0A249RX42 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic1.9e-4090.74Show/hide
Query:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII
        GSFEFRDL +IFNNLIDNNEVNFLFVTLCAVLLFAGAVAK  QFPLHVWL DAMEGPTPIS LIHAATMVAA IFLVARLL LF+VIPYIMNLIALIGII
Subjt:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII

Query:  KVLFGATL
         VLFGATL
Subjt:  KVLFGATL

A0A343A8F9 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic1.9e-4090.74Show/hide
Query:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII
        GSFEFRDL +IFNNLIDNNEVNFLFVTLCAVLLFAGAVAK  QFPLHVWL DAMEGPTPIS LIHAATMVAA IFLVARLL LF+VIPYIMNLIALIGII
Subjt:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII

Query:  KVLFGATL
         VLFGATL
Subjt:  KVLFGATL

A0A7T3USK6 NADH-plastoquinone oxidoreductase subunit 51.9e-4090.74Show/hide
Query:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII
        GSFEFRDL +IFNNLIDNNEVNFLFVTLCAVLLFAGAVAK  QFPLHVWL DAMEGPTPIS LIHAATMVAA IFLVARLL LFI+IPYIMNLIALIGII
Subjt:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII

Query:  KVLFGATL
         VLFGATL
Subjt:  KVLFGATL

SwissProt top hitse value%identityAlignment
P51098 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic6.8e-4083.64Show/hide
Query:  IIGSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIG
        I GSFEFRDL +IFNNLI NNEVNFLFVTLCAVLLFAGA+AK  QFPLHVWL DAMEGPTPIS LIHAATMVAA IFLVARL+ LFIVIP+IMN I+LIG
Subjt:  IIGSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIG

Query:  IIKVLFGATL
        II V  GATL
Subjt:  IIKVLFGATL

P51099 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic6.8e-4084.55Show/hide
Query:  IIGSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIG
        I GSFEFRDL +IFNNLI NNEVNF+FVTLCAVLLFAGAVAK  QFPLHVWL DAMEGPTPIS LIHAATMVAA IFLVARLL LFIVIP+IMN I+LIG
Subjt:  IIGSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIG

Query:  IIKVLFGATL
        II V  GATL
Subjt:  IIKVLFGATL

Q2QD43 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic2.5e-4289.81Show/hide
Query:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII
        GSFEFRDL +IFNNLIDNNEVNFLF+TLCAVLLFAGAVAK  QFPLHVWL DAMEGPTPIS LIHAATMVAA IFLVARLL LFI IPYIMNLIALIGII
Subjt:  GSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGII

Query:  KVLFGATL
         VLFGATL
Subjt:  KVLFGATL

Q31849 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic4.7e-4185.45Show/hide
Query:  IIGSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIG
        I GSFEFRDL +IFNNLI NNEVNFLFVTLCAVLLFAGA+AK  QFPLHVWL DAMEGPTPIS LIHAATMVAA IFLVARL+ LFIVIP+IMNLI+LIG
Subjt:  IIGSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIG

Query:  IIKVLFGATL
        II V FGATL
Subjt:  IIKVLFGATL

Q68RV9 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic2.3e-4085.45Show/hide
Query:  IIGSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIG
        I GSFEFRDL KIF+NLI NNEVNFLFVTLCAVLLFAGAVAK  QFPLHVWL DAMEGPTPIS LIHAATMVAA IFLVARL+ LFIVIP+IMNLI+L+G
Subjt:  IIGSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIG

Query:  IIKVLFGATL
        II VL GATL
Subjt:  IIKVLFGATL

Arabidopsis top hitse value%identityAlignment
ATCG01010.1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein2.1e-3678.18Show/hide
Query:  IIGSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIG
        I GSFEF+DL +IFNNLI NN VN LF+TLCA LLF G +AK  QFPLHVWL DAMEGPTPIS LIHAATMVAA IFLVARLL LFIVIP IM +I+LIG
Subjt:  IIGSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIG

Query:  IIKVLFGATL
        II VL GATL
Subjt:  IIKVLFGATL

ATMG00060.1 NADH dehydrogenase subunit 5C2.4e-0845.12Show/hide
Query:  VTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGIIKVLFGAT
        ++L  +LL  GAV K  Q   H W  DAMEGPTP+S  IHAATMV A +F++AR   LF   P  + +I   G       AT
Subjt:  VTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGIIKVLFGAT

ATMG00513.1 NADH dehydrogenase 5A2.4e-0845.12Show/hide
Query:  VTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGIIKVLFGAT
        ++L  +LL  GAV K  Q   H W  DAMEGPTP+S  IHAATMV A +F++AR   LF   P  + +I   G       AT
Subjt:  VTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGIIKVLFGAT

ATMG00665.1 NADH dehydrogenase 5B2.4e-0845.12Show/hide
Query:  VTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGIIKVLFGAT
        ++L  +LL  GAV K  Q   H W  DAMEGPTP+S  IHAATMV A +F++AR   LF   P  + +I   G       AT
Subjt:  VTLCAVLLFAGAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGIIKVLFGAT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGAAGGAAGGAAGGAAGGGCGCCCGAGGATCGAGGGAGAGGGTGGCCCACGGTGGCCCACTCAGACTGCCCAACTGACCCGCGAGACTGCCCGACACCATTTCA
GAGGAGGATCGAAAGCTCTCGTCGTTTTCCGCTGCCCGTAAGGGCCAATGACGGGCAGGGGGTACCCTCTGATTTAAAAGCTCCCGCTCCGGACGGCACGCGCGCTCAGA
TAATAGGGAGTTTTGAATTTCGAGATTTATTGAAAATATTCAATAACTTGATTGATAATAATGAGGTGAATTTCTTATTTGTTACTTTGTGTGCTGTCCTATTATTTGCA
GGTGCGGTTGCTAAATTTGTTCAATTTCCTCTTCATGTATGGTTACTTGATGCTATGGAGGGTCCTACCCCCATTTCGACTCTTATACATGCTGCTACGATGGTAGCAGC
GAAAATTTTTCTTGTCGCTCGGCTTCTTTTGCTTTTTATAGTAATACCTTACATCATGAATCTAATCGCTTTGATAGGTATAATAAAAGTACTATTTGGAGCTACTTTAG
TGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGAAGGAAGGAAGGAAGGGCGCCCGAGGATCGAGGGAGAGGGTGGCCCACGGTGGCCCACTCAGACTGCCCAACTGACCCGCGAGACTGCCCGACACCATTTCA
GAGGAGGATCGAAAGCTCTCGTCGTTTTCCGCTGCCCGTAAGGGCCAATGACGGGCAGGGGGTACCCTCTGATTTAAAAGCTCCCGCTCCGGACGGCACGCGCGCTCAGA
TAATAGGGAGTTTTGAATTTCGAGATTTATTGAAAATATTCAATAACTTGATTGATAATAATGAGGTGAATTTCTTATTTGTTACTTTGTGTGCTGTCCTATTATTTGCA
GGTGCGGTTGCTAAATTTGTTCAATTTCCTCTTCATGTATGGTTACTTGATGCTATGGAGGGTCCTACCCCCATTTCGACTCTTATACATGCTGCTACGATGGTAGCAGC
GAAAATTTTTCTTGTCGCTCGGCTTCTTTTGCTTTTTATAGTAATACCTTACATCATGAATCTAATCGCTTTGATAGGTATAATAAAAGTACTATTTGGAGCTACTTTAG
TGTAG
Protein sequenceShow/hide protein sequence
MEGRKEGRAPEDRGRGWPTVAHSDCPTDPRDCPTPFQRRIESSRRFPLPVRANDGQGVPSDLKAPAPDGTRAQIIGSFEFRDLLKIFNNLIDNNEVNFLFVTLCAVLLFA
GAVAKFVQFPLHVWLLDAMEGPTPISTLIHAATMVAAKIFLVARLLLLFIVIPYIMNLIALIGIIKVLFGATLV