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Clc01G17080 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G17080
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr01:29831863..29832763
RNA-Seq ExpressionClc01G17080
SyntenyClc01G17080
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647506.1 hypothetical protein Csa_003725 [Cucumis sativus]5.1e-2666.04Show/hide
Query:  MPNTETPNLNSPAMPNLRTSSLFLIILLIAAPRFFLLVDCRPLRPGSTIEPHRVHNNVSALASQNP---ETAVSPPIYSGSRRIGDDNGGVAFTFASGPS
        MP+TE PNL SP M N R SS  LII LIAAPRFFL VDCRPLRPGS I+ H VH+N SAL    P   + A + PI SG+  IGD+ GGVAFT ASGPS
Subjt:  MPNTETPNLNSPAMPNLRTSSLFLIILLIAAPRFFLLVDCRPLRPGSTIEPHRVHNNVSALASQNP---ETAVSPPIYSGSRRIGDDNGGVAFTFASGPS

Query:  RKGAGH
        RKGAGH
Subjt:  RKGAGH

KAG6595007.1 hypothetical protein SDJN03_11560, partial [Cucurbita argyrosperma subsp. sororia]1.5e-1255.56Show/hide
Query:  MPNLRTSSLFLIILLIAAPRFFLLVDCRPLRPGSTIEPHRVHNNVSALASQNPETAVSPPIYSGSRRIGDDNGGVAFTFASGPSRKGAGH
        M N+++SSL LI+ LIAA  F LLVD RPLR GST + H + NN SALA +    A SP   S   + G   GGV FT  SGPSRKGAGH
Subjt:  MPNLRTSSLFLIILLIAAPRFFLLVDCRPLRPGSTIEPHRVHNNVSALASQNPETAVSPPIYSGSRRIGDDNGGVAFTFASGPSRKGAGH

KAG6604156.1 hypothetical protein SDJN03_04765, partial [Cucurbita argyrosperma subsp. sororia]1.6e-1966.67Show/hide
Query:  NLNSPAMPNLRTSSLFLIILLIAAPRFFLLVDCRPLRPGSTIEPHRVHNNVSALASQNPETAVSPPIYSGSRRIGDDNGGVAFTFASGPSRKGAGH
        NLNSPAMP ++ SSL LI++L+AA RF  LVDCRPLR GSTIE H+  NN SA++S   E A S P  SGSR  GD  GGVAFT ASGPSRKGAGH
Subjt:  NLNSPAMPNLRTSSLFLIILLIAAPRFFLLVDCRPLRPGSTIEPHRVHNNVSALASQNPETAVSPPIYSGSRRIGDDNGGVAFTFASGPSRKGAGH

TYK12856.1 hypothetical protein E5676_scaffold255G004480 [Cucumis melo var. makuwa]1.2e-2770.48Show/hide
Query:  MPNTETPNLNSPAMPNLRTSSLFLIILLIAAPRFFLLVDCRPLRPGSTIEPHRVHNNVSALASQNPET--AVSPPIYSGSRRIGDDNGGVAFTFASGPSR
        M  TE PNLNSPAMPN R SS  LIILL+AAPRFFL VDCRPLRPGS I+ H VH N SA+    PET  A +  I SG RRIGD+ GGVAFT ASGPSR
Subjt:  MPNTETPNLNSPAMPNLRTSSLFLIILLIAAPRFFLLVDCRPLRPGSTIEPHRVHNNVSALASQNPET--AVSPPIYSGSRRIGDDNGGVAFTFASGPSR

Query:  KGAGH
        KGAGH
Subjt:  KGAGH

TrEMBL top hitse value%identityAlignment
A0A5D3CR30 Uncharacterized protein5.9e-2870.48Show/hide
Query:  MPNTETPNLNSPAMPNLRTSSLFLIILLIAAPRFFLLVDCRPLRPGSTIEPHRVHNNVSALASQNPET--AVSPPIYSGSRRIGDDNGGVAFTFASGPSR
        M  TE PNLNSPAMPN R SS  LIILL+AAPRFFL VDCRPLRPGS I+ H VH N SA+    PET  A +  I SG RRIGD+ GGVAFT ASGPSR
Subjt:  MPNTETPNLNSPAMPNLRTSSLFLIILLIAAPRFFLLVDCRPLRPGSTIEPHRVHNNVSALASQNPET--AVSPPIYSGSRRIGDDNGGVAFTFASGPSR

Query:  KGAGH
        KGAGH
Subjt:  KGAGH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGAACACAGAAACGCCGAATCTAAATTCTCCGGCGATGCCCAACCTCAGAACTTCCTCTTTATTTCTAATCATCCTGCTAATCGCCGCCCCACGGTTCTTTCTTCT
CGTAGATTGCAGACCGCTCCGGCCCGGTTCAACGATAGAGCCGCACCGTGTTCATAATAATGTCTCTGCTCTTGCCAGCCAGAACCCGGAAACAGCAGTTTCGCCGCCCA
TATATTCCGGTAGCCGCCGTATCGGAGACGACAACGGCGGCGTAGCTTTTACTTTTGCTTCGGGACCCAGCAGAAAGGGTGCTGGCCATTAA
mRNA sequenceShow/hide mRNA sequence
TATAAACCAACCACAATTTCAATGCAAATAGAGAGATGCCGAACACAGAAACGCCGAATCTAAATTCTCCGGCGATGCCCAACCTCAGAACTTCCTCTTTATTTCTAATC
ATCCTGCTAATCGCCGCCCCACGGTTCTTTCTTCTCGTAGATTGCAGACCGCTCCGGCCCGGTTCAACGATAGAGCCGCACCGTGTTCATAATAATGTCTCTGCTCTTGC
CAGCCAGAACCCGGAAACAGCAGTTTCGCCGCCCATATATTCCGGTAGCCGCCGTATCGGAGACGACAACGGCGGCGTAGCTTTTACTTTTGCTTCGGGACCCAGCAGAA
AGGGTGCTGGCCATTAAAATCGAACATATTCTTTGCCCATTTCATATTGCCAAATCCAATTTTTTGGCTTTATTCTTTAGGGTTGTAATATGTACATACAATTTTCTTAC
TGTAGAGATTTTTTTTCGGGGGTTTAAATACCATTACTTTTCAACTTTTGTCTTTAAATTTTTTGGAGTTAGGATTTCAGTCCCGTCTACTTTTAATAAATCTTATATTT
AGTCTCTCGAAGTTAATTTTTTTCAAAATTAACTATCATGACAATAATAAGCTTCGTGTAAGAAAATATATGAGGATGTTTTCAAAATTTATAGGTTAGAAGAGACTAAA
TTCAAGATTTATATGATAGTACATAGACTAAAAGAACCGTTTGTTTCGTGGGAGTCTAAATTTCATGAGTTTGTGGATTACCGTGTTTGTTTTGCGGTAATGTAAGATGT
CCGACCATCTTGAGATTTTTTATCTCTCCAGATGTTGGAATGCCCTCTTATAACATGGATATTTTTAATTCTCATGTTGAAAGTTTTTTTTAACTCTTTGTTTTGTTTGG
TTGGAGGTAATGTGAGATGGT
Protein sequenceShow/hide protein sequence
MPNTETPNLNSPAMPNLRTSSLFLIILLIAAPRFFLLVDCRPLRPGSTIEPHRVHNNVSALASQNPETAVSPPIYSGSRRIGDDNGGVAFTFASGPSRKGAGH