; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G17200 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G17200
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGibberellin regulated protein
Genome locationClcChr01:29946966..29948901
RNA-Seq ExpressionClc01G17200
SyntenyClc01G17200
Gene Ontology termsGO:0009740 - gibberellic acid mediated signaling pathway (biological process)
GO:0005576 - extracellular region (cellular component)
InterPro domainsIPR003854 - Gibberellin regulated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7026958.1 Snakin-1, partial [Cucurbita argyrosperma subsp. argyrosperma]7.1e-4187.23Show/hide
Query:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MKS S++L+L+S +LSSFLLQ+AIADSS TYAPS CDSKCG RCLNAGVKDRCLKYCGLCCQQC CVPSGTYGNKSECPCYRDKLNSKGKSKCP
Subjt:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP

XP_008440339.1 PREDICTED: peamaclein-like [Cucumis melo]2.0e-4393.62Show/hide
Query:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MKS SVTL+LLSFILSSF LQY  ADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQC CVPSGTYGNKSECPCYRDKLNSKGKSKCP
Subjt:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP

XP_031742787.1 peamaclein-like isoform X1 [Cucumis sativus]1.9e-4191.58Show/hide
Query:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAP-SVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MKS SVTL+LLS ILSSF LQYA ADSSTTYAP  VCDSKCGVRCLNAGVKDRCLKYCGLCCQQC CVPSGTYGNKSECPCYRDKLNSKGKSKCP
Subjt:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAP-SVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP

XP_031742788.1 peamaclein-like isoform X2 [Cucumis sativus]2.6e-4393.62Show/hide
Query:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MKS SVTL+LLS ILSSF LQYA ADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQC CVPSGTYGNKSECPCYRDKLNSKGKSKCP
Subjt:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP

XP_038880848.1 peamaclein-like [Benincasa hispida]1.4e-4495.74Show/hide
Query:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MKSASV L+LLS ILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCG+CCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP
Subjt:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP

TrEMBL top hitse value%identityAlignment
A0A0A0KLG3 Uncharacterized protein9.1e-4291.58Show/hide
Query:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAP-SVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MKS SVTL+LLS ILSSF LQYA ADSSTTYAP  VCDSKCGVRCLNAGVKDRCLKYCGLCCQQC CVPSGTYGNKSECPCYRDKLNSKGKSKCP
Subjt:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAP-SVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP

A0A1S3B1M5 peamaclein-like9.7e-4493.62Show/hide
Query:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MKS SVTL+LLSFILSSF LQY  ADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQC CVPSGTYGNKSECPCYRDKLNSKGKSKCP
Subjt:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP

A0A2P5FSJ8 Gibberellin regulated protein1.1e-3170.21Show/hide
Query:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MK   + LLL+S   SS LLQ+ +AD +    PS CDSKC +RC NAGVKDRCLKYCG+CCQQC+CVPSGTYGNKSECPCYRDKL+SKG  KCP
Subjt:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP

A0A6J1HEX9 peamaclein-like1.3e-4086.17Show/hide
Query:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MKS S++L+L+S +LSSFLLQ+AIADS  TYAPS CDSKCG RCLNAGVKDRCLKYCGLCCQQC CVPSGTYGNKSECPCYRDKLNSKGKSKCP
Subjt:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP

A0A6J1KSF0 peamaclein-like6.5e-4085.11Show/hide
Query:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MKS S++L+L+S ILSSFLL +AIADSS TY PS CDSKCG RCLNAGVKDRC+KYCGLCCQQC CVPSGTYGNKSECPCYRDKLNSKGKSKCP
Subjt:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP

SwissProt top hitse value%identityAlignment
O80641 Gibberellin-regulated protein 84.5e-2254.26Show/hide
Query:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MK   V   ++S +L+S     + ADSS       C  KC VRC  AG  + CLKYC +CCQ+CNCVPSGT+G+K ECPCYRD  NSKG SKCP
Subjt:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP

O82328 Gibberellin-regulated protein 74.5e-2253.61Show/hide
Query:  TLLLLSFILSSFLLQYAIADSSTTYAPSV---------CDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        +LLL+S  L+S  +  A    +   AP           C  KC  RC  AG+KDRCLKYCG+CC+ C CVPSGTYGNK EC CYRDKL+SKG  KCP
Subjt:  TLLLLSFILSSFLLQYAIADSSTTYAPSV---------CDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP

P86888 Peamaclein1.7e-2475.41Show/hide
Query:  SVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        S CDSKCGVRC  AG ++RCLKYCG+CC++C+CVPSGTYGNK ECPCYRD  NSKG  KCP
Subjt:  SVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP

Q8LFM2 Gibberellin-regulated protein 106.3e-2457.89Show/hide
Query:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCN-CVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MK  +V +L++S +++S L   + ADSS       C  KC VRC  AG +DRCLKYC +CC++CN CVPSGTYGNK ECPCYRD  NSKG SKCP
Subjt:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCN-CVPSGTYGNKSECPCYRDKLNSKGKSKCP

Q948Z4 Snakin-11.6e-2761.7Show/hide
Query:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MK   +TLLL++ +++  L+Q  +A S      S CDSKC +RC  AG+ DRCLKYCG+CC++C CVPSGTYGNK ECPCYRDK NSKGKSKCP
Subjt:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP

Arabidopsis top hitse value%identityAlignment
AT1G10588.1 Gibberellin-regulated family protein3.3e-2053.33Show/hide
Query:  VTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAG-VKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        V   ++S +L+S     + ADS      S C  KC VRC  A    + CL+ C +CCQ+CNCVPSGTYGNK ECPCYRD  NSKG SKCP
Subjt:  VTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAG-VKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP

AT1G10588.2 Gibberellin-regulated family protein4.3e-2053.33Show/hide
Query:  VTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAG-VKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        V   ++S +L+S     + ADSS       C  KC VRC  A    + CL+ C +CCQ+CNCVPSGTYGNK ECPCYRD  NSKG SKCP
Subjt:  VTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAG-VKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP

AT2G14900.1 Gibberellin-regulated family protein3.2e-2353.61Show/hide
Query:  TLLLLSFILSSFLLQYAIADSSTTYAPSV---------CDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        +LLL+S  L+S  +  A    +   AP           C  KC  RC  AG+KDRCLKYCG+CC+ C CVPSGTYGNK EC CYRDKL+SKG  KCP
Subjt:  TLLLLSFILSSFLLQYAIADSSTTYAPSV---------CDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP

AT2G39540.1 Gibberellin-regulated family protein3.2e-2354.26Show/hide
Query:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MK   V   ++S +L+S     + ADSS       C  KC VRC  AG  + CLKYC +CCQ+CNCVPSGT+G+K ECPCYRD  NSKG SKCP
Subjt:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP

AT5G59845.1 Gibberellin-regulated family protein4.5e-2557.89Show/hide
Query:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCN-CVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MK  +V +L++S +++S L   + ADSS       C  KC VRC  AG +DRCLKYC +CC++CN CVPSGTYGNK ECPCYRD  NSKG SKCP
Subjt:  MKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCN-CVPSGTYGNKSECPCYRDKLNSKGKSKCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAGGAGAAAGATGAAATCTGCTTCTGTCACTTTGCTTCTTCTTTCATTCATTCTGAGCTCCTTCCTCCTCCAATATGCCATTGCTGATTCCTCTACAACGTATGC
TCCAAGTGTTTGTGATTCAAAATGTGGGGTAAGATGCTTGAATGCAGGGGTGAAGGACAGGTGCTTGAAGTATTGTGGACTTTGCTGCCAACAGTGCAATTGTGTGCCCT
CTGGAACCTATGGAAACAAGTCAGAATGCCCTTGTTATAGAGACAAGTTGAACTCCAAGGGAAAATCTAAATGCCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAGGAGAAAGATGAAATCTGCTTCTGTCACTTTGCTTCTTCTTTCATTCATTCTGAGCTCCTTCCTCCTCCAATATGCCATTGCTGATTCCTCTACAACGTATGC
TCCAAGTGTTTGTGATTCAAAATGTGGGGTAAGATGCTTGAATGCAGGGGTGAAGGACAGGTGCTTGAAGTATTGTGGACTTTGCTGCCAACAGTGCAATTGTGTGCCCT
CTGGAACCTATGGAAACAAGTCAGAATGCCCTTGTTATAGAGACAAGTTGAACTCCAAGGGAAAATCTAAATGCCCTTGATTTCATTTTTCATTTATTTTCCCTCCCTTG
AAATCTGTCATGTTTTCACTTCTCAATCACTTTGAATCTAATTTCCTTTCTTCCCTGCAGTTTCTTAAACTTGAGTGGGTGTCTGTGACATGACCAAATACATTCATTGA
ATCAAACTGAAACATATTAATGCC
Protein sequenceShow/hide protein sequence
MKRRKMKSASVTLLLLSFILSSFLLQYAIADSSTTYAPSVCDSKCGVRCLNAGVKDRCLKYCGLCCQQCNCVPSGTYGNKSECPCYRDKLNSKGKSKCP