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Clc01G17810 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G17810
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionSWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein
Genome locationClcChr01:30409113..30409710
RNA-Seq ExpressionClc01G17810
SyntenyClc01G17810
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXC12618.1 hypothetical protein L484_012996 [Morus notabilis]1.9e-1841.94Show/hide
Query:  MNHRKVLSQGNVPFSWEESP--------FCFRDFQALAL---HSSPLPPPHISQFDVVS-------------KIPPPPC-RLPPRSVTNAVSAKEEDDPF
        M HRKV SQG++PF WE+ P         C +D+++ AL    S   PP    QF ++S             KIPPPPC   PP   ++A   + ++DPF
Subjt:  MNHRKVLSQGNVPFSWEESP--------FCFRDFQALAL---HSSPLPPPHISQFDVVS-------------KIPPPPC-RLPPRSVTNAVSAKEEDDPF

Query:  LAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKFFGFSCKSIDSCEIRDASFFKL
        L AYKECTK  K GK   N  NK    V+ KS F  FSCK  +SCE+R+ +F KL
Subjt:  LAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKFFGFSCKSIDSCEIRDASFFKL

KAA0036397.1 hypothetical protein E6C27_scaffold18G001980 [Cucumis melo var. makuwa]2.5e-3162.75Show/hide
Query:  NHRKVLSQGNVPFSWEESPFC--FRDFQALALH-----SSPLPPPHISQFD--VVSKIPPPPCRLPPRSVTNAVSAKEE-DDPFLAAYKECTKSAKNGKF
        +HRKVLSQGN+    +  P    FRDFQALALH     SS    P  SQFD  V SKIPPPPCR PP    NA SAKEE DDPFL AYKECTKS KN K 
Subjt:  NHRKVLSQGNVPFSWEESPFC--FRDFQALALH-----SSPLPPPHISQFD--VVSKIPPPPCRLPPRSVTNAVSAKEE-DDPFLAAYKECTKSAKNGKF

Query:  VPNTGNKGAVAVVKKSKFF--GFSCKSIDSCEIRDA-SFFKLRRDRIHVSTWK
        + N G      VVKKSKFF   FSCK+IDSC+I D  SFFKL RD IHVSTWK
Subjt:  VPNTGNKGAVAVVKKSKFF--GFSCKSIDSCEIRDA-SFFKLRRDRIHVSTWK

KAG6594957.1 hypothetical protein SDJN03_11510, partial [Cucurbita argyrosperma subsp. sororia]2.5e-3155.7Show/hide
Query:  MNHRKVLSQGNVPFSWEESP-----FCFRDFQALALHSSPLPPPHISQFDVVSKI-PPPPCRLPPRSVTNAVS--AKEEDDPFLAAYKECTKSAKNGKFV
        M+H+K+ S+GNVPFSWEE P      CF+D Q L LHS        S+FD V KI PPPPCR+ P S+ NA +  ++ E+DPFL AYKECTKS K GK  
Subjt:  MNHRKVLSQGNVPFSWEESP-----FCFRDFQALALHSSPLPPPHISQFDVVSKI-PPPPCRLPPRSVTNAVS--AKEEDDPFLAAYKECTKSAKNGKFV

Query:  PNTGNKGAVAVVKKSKFFGFSCKSIDSCEIRDASFFKLRRDRIHVSTWK
                  V KKSK FGF CKS DSCEIRDAS FKL RD I V +WK
Subjt:  PNTGNKGAVAVVKKSKFFGFSCKSIDSCEIRDASFFKLRRDRIHVSTWK

KAG6604109.1 hypothetical protein SDJN03_04718, partial [Cucurbita argyrosperma subsp. sororia]5.8e-2869.91Show/hide
Query:  MNHRKVLSQGNVPFSWEESP----FCFRDFQALALHSSPLPPPH--ISQFDVVSKIPPPPCRLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPN
        MNHRKVLSQ N+PFSWE++P    F FRDFQALAL  SP    H   S+FDVVSKIPPPP R  PRS+ NA SAK EDDPFL AYKECTKS KNG FV  
Subjt:  MNHRKVLSQGNVPFSWEESP----FCFRDFQALALHSSPLPPPH--ISQFDVVSKIPPPPCRLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPN

Query:  TGNKGAVAVVKKS
         GNKGA AV KKS
Subjt:  TGNKGAVAVVKKS

KGN48633.1 hypothetical protein Csa_003745 [Cucumis sativus]2.5e-3163.58Show/hide
Query:  HRKVLSQGNVPFSWEESP---FCFRDFQALA--LHSSPL--PPPHISQFD--VVSKIPPPPCRLPPRSVTNAVSAKEE-DDPFLAAYKECTKSAKNGKFV
        HRK+LSQGN+     ++P     FRDFQALA  LHSS +   P   SQFD  V SKIPPPPCRLPP    NAVSAKEE DDPFL AYKECTKS K     
Subjt:  HRKVLSQGNVPFSWEESP---FCFRDFQALA--LHSSPL--PPPHISQFD--VVSKIPPPPCRLPPRSVTNAVSAKEE-DDPFLAAYKECTKSAKNGKFV

Query:  PNTGNKGAVAVVKKSKF-FG-FSCKSIDSCEIRDASFFKLRRDRIHVSTWK
         N G    V VVKKSKF FG FSCK+I SC+I D SFFKL RD IHVSTWK
Subjt:  PNTGNKGAVAVVKKSKF-FG-FSCKSIDSCEIRDASFFKLRRDRIHVSTWK

TrEMBL top hitse value%identityAlignment
A0A0A0KGJ1 Uncharacterized protein1.2e-3163.58Show/hide
Query:  HRKVLSQGNVPFSWEESP---FCFRDFQALA--LHSSPL--PPPHISQFD--VVSKIPPPPCRLPPRSVTNAVSAKEE-DDPFLAAYKECTKSAKNGKFV
        HRK+LSQGN+     ++P     FRDFQALA  LHSS +   P   SQFD  V SKIPPPPCRLPP    NAVSAKEE DDPFL AYKECTKS K     
Subjt:  HRKVLSQGNVPFSWEESP---FCFRDFQALA--LHSSPL--PPPHISQFD--VVSKIPPPPCRLPPRSVTNAVSAKEE-DDPFLAAYKECTKSAKNGKFV

Query:  PNTGNKGAVAVVKKSKF-FG-FSCKSIDSCEIRDASFFKLRRDRIHVSTWK
         N G    V VVKKSKF FG FSCK+I SC+I D SFFKL RD IHVSTWK
Subjt:  PNTGNKGAVAVVKKSKF-FG-FSCKSIDSCEIRDASFFKLRRDRIHVSTWK

A0A5D3CLL9 Uncharacterized protein1.2e-3162.75Show/hide
Query:  NHRKVLSQGNVPFSWEESPFC--FRDFQALALH-----SSPLPPPHISQFD--VVSKIPPPPCRLPPRSVTNAVSAKEE-DDPFLAAYKECTKSAKNGKF
        +HRKVLSQGN+    +  P    FRDFQALALH     SS    P  SQFD  V SKIPPPPCR PP    NA SAKEE DDPFL AYKECTKS KN K 
Subjt:  NHRKVLSQGNVPFSWEESPFC--FRDFQALALH-----SSPLPPPHISQFD--VVSKIPPPPCRLPPRSVTNAVSAKEE-DDPFLAAYKECTKSAKNGKF

Query:  VPNTGNKGAVAVVKKSKFF--GFSCKSIDSCEIRDA-SFFKLRRDRIHVSTWK
        + N G      VVKKSKFF   FSCK+IDSC+I D  SFFKL RD IHVSTWK
Subjt:  VPNTGNKGAVAVVKKSKFF--GFSCKSIDSCEIRDA-SFFKLRRDRIHVSTWK

A0A7J6I4Y5 Uncharacterized protein9.9e-1845.07Show/hide
Query:  MNHRKVLSQGNVPFSWEESPFCFR------DFQALALHSSPLPPPHISQFD---VVSKIPPPPC---RLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKN
        M+HRKV SQG++PFSWE+ P   +        QAL L SSP P P IS  +   V  KIP PPC     PP    +A   K ++DPFL AYKECTK  K 
Subjt:  MNHRKVLSQGNVPFSWEESPFCFR------DFQALALHSSPLPPPHISQFD---VVSKIPPPPC---RLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKN

Query:  GKFVPNTGNKGAVAVVKKSKFFGFSCKSIDSCEIRDASFFKL
               GN    + V+K+ F  FSCKS  SC++R+ +F KL
Subjt:  GKFVPNTGNKGAVAVVKKSKFFGFSCKSIDSCEIRDASFFKL

A0A803PEU5 Uncharacterized protein9.9e-1845.07Show/hide
Query:  MNHRKVLSQGNVPFSWEESPFCFR------DFQALALHSSPLPPPHISQFD---VVSKIPPPPC---RLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKN
        M+HRKV SQG++PFSWE+ P   +        QAL L SSP P P IS  +   V  KIP PPC     PP    +A   K ++DPFL AYKECTK  K 
Subjt:  MNHRKVLSQGNVPFSWEESPFCFR------DFQALALHSSPLPPPHISQFD---VVSKIPPPPC---RLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKN

Query:  GKFVPNTGNKGAVAVVKKSKFFGFSCKSIDSCEIRDASFFKL
               GN    + V+K+ F  FSCKS  SC++R+ +F KL
Subjt:  GKFVPNTGNKGAVAVVKKSKFFGFSCKSIDSCEIRDASFFKL

W9RVC8 Uncharacterized protein9.0e-1941.94Show/hide
Query:  MNHRKVLSQGNVPFSWEESP--------FCFRDFQALAL---HSSPLPPPHISQFDVVS-------------KIPPPPC-RLPPRSVTNAVSAKEEDDPF
        M HRKV SQG++PF WE+ P         C +D+++ AL    S   PP    QF ++S             KIPPPPC   PP   ++A   + ++DPF
Subjt:  MNHRKVLSQGNVPFSWEESP--------FCFRDFQALAL---HSSPLPPPHISQFDVVS-------------KIPPPPC-RLPPRSVTNAVSAKEEDDPF

Query:  LAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKFFGFSCKSIDSCEIRDASFFKL
        L AYKECTK  K GK   N  NK    V+ KS F  FSCK  +SCE+R+ +F KL
Subjt:  LAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKFFGFSCKSIDSCEIRDASFFKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCATAGAAAAGTCCTTTCACAAGGAAATGTTCCCTTCTCCTGGGAGGAAAGCCCATTCTGCTTCAGGGATTTCCAAGCCCTTGCCTTACATTCCTCCCCACTGCC
ACCGCCACATATCTCTCAATTCGACGTCGTTTCCAAGATTCCTCCACCGCCGTGTCGGCTTCCTCCCCGTTCGGTTACAAACGCCGTTTCTGCCAAGGAGGAAGACGACC
CTTTTCTCGCGGCCTATAAGGAGTGTACTAAAAGTGCCAAAAATGGAAAATTTGTGCCCAACACAGGAAACAAAGGAGCTGTTGCTGTTGTGAAGAAGAGTAAGTTTTTT
GGTTTTTCTTGTAAAAGTATTGATTCTTGTGAAATTAGAGATGCTAGTTTCTTCAAGCTTCGTAGAGACAGAATTCATGTCTCAACTTGGAAATAA
mRNA sequenceShow/hide mRNA sequence
GTCACACCCTCCTTTTTTTTTCTTCCTCCTTTTAAACCTCACTGTGTTGGCCTCTCCCTTTTCACAATTATCATTTTTCATCATTACAAATTATTATTATTATTATTATT
GATATGAATCATAGAAAAGTCCTTTCACAAGGAAATGTTCCCTTCTCCTGGGAGGAAAGCCCATTCTGCTTCAGGGATTTCCAAGCCCTTGCCTTACATTCCTCCCCACT
GCCACCGCCACATATCTCTCAATTCGACGTCGTTTCCAAGATTCCTCCACCGCCGTGTCGGCTTCCTCCCCGTTCGGTTACAAACGCCGTTTCTGCCAAGGAGGAAGACG
ACCCTTTTCTCGCGGCCTATAAGGAGTGTACTAAAAGTGCCAAAAATGGAAAATTTGTGCCCAACACAGGAAACAAAGGAGCTGTTGCTGTTGTGAAGAAGAGTAAGTTT
TTTGGTTTTTCTTGTAAAAGTATTGATTCTTGTGAAATTAGAGATGCTAGTTTCTTCAAGCTTCGTAGAGACAGAATTCATGTCTCAACTTGGAAATAAATAAGGAGGTC
CTACTCCCACAATAAAATTTTATTCACTCTTTTTTGTTTTTTGAAACG
Protein sequenceShow/hide protein sequence
MNHRKVLSQGNVPFSWEESPFCFRDFQALALHSSPLPPPHISQFDVVSKIPPPPCRLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKFF
GFSCKSIDSCEIRDASFFKLRRDRIHVSTWK