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Clc01G18220 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G18220
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionHydroxyproline-rich glycoprotein family protein
Genome locationClcChr01:30800897..30807176
RNA-Seq ExpressionClc01G18220
SyntenyClc01G18220
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR037699 - Uncharacterized protein At5g65660-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008440504.1 PREDICTED: uncharacterized protein At5g65660 [Cucumis melo]2.1e-5790.23Show/hide
Query:  MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHD-HDLHLRSSPSKSNPTSQDLEKNQRESLSVLMPGDSVPKF
        MESP+FSPPH+D SRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRS SQPL D HDLH +S PSKSNPT QDLEKNQRESLSVLMPGDS+PKF
Subjt:  MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHD-HDLHLRSSPSKSNPTSQDLEKNQRESLSVLMPGDSVPKF

Query:  IAMPCPREPPRPEMIEVKVEKPPKPLRIAVPFY
        IAMPCPREP RPEMIEVKVEKP KPLRIAVPFY
Subjt:  IAMPCPREPPRPEMIEVKVEKPPKPLRIAVPFY

XP_022133072.1 uncharacterized protein At5g65660 [Momordica charantia]1.6e-5790.91Show/hide
Query:  MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHDHDLHLRSSPSKSNPTSQDLEKNQRESLSVLMPGDSVPKFI
        MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQ  H H LHL SSPSKSNP S DLE NQR+SLSVLMPGDS+PKFI
Subjt:  MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHDHDLHLRSSPSKSNPTSQDLEKNQRESLSVLMPGDSVPKFI

Query:  AMPCPREPPRPEMIEVKVEKPPKPLRIAVPFY
        AMPCPREPPRPEMI+VKVEKPPKP RIAVPFY
Subjt:  AMPCPREPPRPEMIEVKVEKPPKPLRIAVPFY

XP_023003846.1 uncharacterized protein At5g65660-like [Cucurbita maxima]9.0e-6186.21Show/hide
Query:  LFLLPTHDCRFHMESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHDHDLH-LRSSPSKSNPTSQDLEKNQRESL
        LF LPTHD  FHME+PDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRS+RRSA+Q LH HD H L SSPSKSN T+ DLEKNQRESL
Subjt:  LFLLPTHDCRFHMESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHDHDLH-LRSSPSKSNPTSQDLEKNQRESL

Query:  SVLMPGDSVPKFIAMPCPREPPRPEMIEVKVEKPPKPLRIAVPFY
        SV+MPGDS+PKFIAMPCPREPPRPEMI+V VEKPPKP RIA+PFY
Subjt:  SVLMPGDSVPKFIAMPCPREPPRPEMIEVKVEKPPKPLRIAVPFY

XP_023518276.1 uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo]1.3e-6287.59Show/hide
Query:  LFLLPTHDCRFHMESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHDHDLH-LRSSPSKSNPTSQDLEKNQRESL
        LF LPTHD  FHME+PDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRS+RRSA+Q LH HD H L SSPSKSNPT+ DLEKNQRESL
Subjt:  LFLLPTHDCRFHMESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHDHDLH-LRSSPSKSNPTSQDLEKNQRESL

Query:  SVLMPGDSVPKFIAMPCPREPPRPEMIEVKVEKPPKPLRIAVPFY
        SV+MPGDS+PKFIAMPCPREPPRPEMI+VKVEKPPKP RIA+PFY
Subjt:  SVLMPGDSVPKFIAMPCPREPPRPEMIEVKVEKPPKPLRIAVPFY

XP_038881262.1 uncharacterized protein At5g65660-like [Benincasa hispida]1.2e-6597.73Show/hide
Query:  MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHDHDLHLRSSPSKSNPTSQDLEKNQRESLSVLMPGDSVPKFI
        MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHD DLHLRSSPSKSNPTSQDLEKNQRESLSVLMPGDS+PKFI
Subjt:  MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHDHDLHLRSSPSKSNPTSQDLEKNQRESLSVLMPGDSVPKFI

Query:  AMPCPREPPRPEMIEVKVEKPPKPLRIAVPFY
        AMPCPREPPR EMIEVKVEKPPKPLRIAVPFY
Subjt:  AMPCPREPPRPEMIEVKVEKPPKPLRIAVPFY

TrEMBL top hitse value%identityAlignment
A0A0A0KGL6 Uncharacterized protein1.4e-5688.72Show/hide
Query:  MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHDH-DLHLRSSPSKSNPTSQDLEKNQRESLSVLMPGDSVPKF
        MESP+FSPPH+D SRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRS+SQPL DH  LHL+S PSKSNPT  DLEKNQRESLSVLMPGDS+PKF
Subjt:  MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHDH-DLHLRSSPSKSNPTSQDLEKNQRESLSVLMPGDSVPKF

Query:  IAMPCPREPPRPEMIEVKVEKPPKPLRIAVPFY
        IAMPCPREP RPE IEVKVEKP KPLRIAVPFY
Subjt:  IAMPCPREPPRPEMIEVKVEKPPKPLRIAVPFY

A0A1S3B1W3 uncharacterized protein At5g656601.0e-5790.23Show/hide
Query:  MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHD-HDLHLRSSPSKSNPTSQDLEKNQRESLSVLMPGDSVPKF
        MESP+FSPPH+D SRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRS SQPL D HDLH +S PSKSNPT QDLEKNQRESLSVLMPGDS+PKF
Subjt:  MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHD-HDLHLRSSPSKSNPTSQDLEKNQRESLSVLMPGDSVPKF

Query:  IAMPCPREPPRPEMIEVKVEKPPKPLRIAVPFY
        IAMPCPREP RPEMIEVKVEKP KPLRIAVPFY
Subjt:  IAMPCPREPPRPEMIEVKVEKPPKPLRIAVPFY

A0A6J1BVL2 uncharacterized protein At5g656607.7e-5890.91Show/hide
Query:  MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHDHDLHLRSSPSKSNPTSQDLEKNQRESLSVLMPGDSVPKFI
        MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQ  H H LHL SSPSKSNP S DLE NQR+SLSVLMPGDS+PKFI
Subjt:  MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHDHDLHLRSSPSKSNPTSQDLEKNQRESLSVLMPGDSVPKFI

Query:  AMPCPREPPRPEMIEVKVEKPPKPLRIAVPFY
        AMPCPREPPRPEMI+VKVEKPPKP RIAVPFY
Subjt:  AMPCPREPPRPEMIEVKVEKPPKPLRIAVPFY

A0A6J1HHX0 uncharacterized protein At5g65660-like5.0e-5787.97Show/hide
Query:  MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHDHDLH-LRSSPSKSNPTSQDLEKNQRESLSVLMPGDSVPKF
        ME+PDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRS+RRSA+Q LH HD H L SSPSKSN T+ DLEKNQRESLSV+MPGDS+PKF
Subjt:  MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHDHDLH-LRSSPSKSNPTSQDLEKNQRESLSVLMPGDSVPKF

Query:  IAMPCPREPPRPEMIEVKVEKPPKPLRIAVPFY
        IAMPCPREPPRPEMI VKVEKPPKP RIA+PFY
Subjt:  IAMPCPREPPRPEMIEVKVEKPPKPLRIAVPFY

A0A6J1KQE2 uncharacterized protein At5g65660-like4.3e-6186.21Show/hide
Query:  LFLLPTHDCRFHMESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHDHDLH-LRSSPSKSNPTSQDLEKNQRESL
        LF LPTHD  FHME+PDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRS+RRSA+Q LH HD H L SSPSKSN T+ DLEKNQRESL
Subjt:  LFLLPTHDCRFHMESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHDHDLH-LRSSPSKSNPTSQDLEKNQRESL

Query:  SVLMPGDSVPKFIAMPCPREPPRPEMIEVKVEKPPKPLRIAVPFY
        SV+MPGDS+PKFIAMPCPREPPRPEMI+V VEKPPKP RIA+PFY
Subjt:  SVLMPGDSVPKFIAMPCPREPPRPEMIEVKVEKPPKPLRIAVPFY

SwissProt top hitse value%identityAlignment
Q9LSK9 Uncharacterized protein At5g656609.4e-3760.9Show/hide
Query:  DFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHDHDLHLRSSPSKSNPTSQDLEKNQRESLSVLMPGDSVPKFIAMPC
        DFSPPH DASRPSLGFPLGTALLL++IF+LSGIFSCCYHWDK RSLRRS +      D  + S+P K  P   +++K Q  S+ VLMPGD+ PKFIA+PC
Subjt:  DFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHDHDLHLRSSPSKSNPTSQDLEKNQRESLSVLMPGDSVPKFIAMPC

Query:  PREPPRPEMIEVKVEKPP-----KPLRIAVPFY
        P  PPRPE + V V+ PP     KP R  VP Y
Subjt:  PREPPRPEMIEVKVEKPP-----KPLRIAVPFY

Arabidopsis top hitse value%identityAlignment
AT5G65660.1 hydroxyproline-rich glycoprotein family protein6.7e-3860.9Show/hide
Query:  DFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHDHDLHLRSSPSKSNPTSQDLEKNQRESLSVLMPGDSVPKFIAMPC
        DFSPPH DASRPSLGFPLGTALLL++IF+LSGIFSCCYHWDK RSLRRS +      D  + S+P K  P   +++K Q  S+ VLMPGD+ PKFIA+PC
Subjt:  DFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHDHDLHLRSSPSKSNPTSQDLEKNQRESLSVLMPGDSVPKFIAMPC

Query:  PREPPRPEMIEVKVEKPP-----KPLRIAVPFY
        P  PPRPE + V V+ PP     KP R  VP Y
Subjt:  PREPPRPEMIEVKVEKPP-----KPLRIAVPFY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCAGAGTTGGTCGCGGCACCGGCATGGCATGATGAGCTCAGCTGGGTCCGGTTTCCCACGCCCCCTCTTCCTTCCCTTCCATAACAAAACCTTCTATCAAGTAAT
CACGCTCTCCTCCTGCGGGACCCTATGCCGCCTTCTTCTCCCTTATTCACCTCCTGGCTTTCTAATGGGCCGGACCAGGCCCAATACTAGAACCTCTTTGTCTTCTTCTT
CTTCTTCTTCTTCTTCTTACACCTTGGTTGGGATTTGCTTGGAAAATGGTGATATGGGACAGAAAAAGAAAGAAGGATATGGAAAGGGAAAGGGAGTGGGTGAAGGTTGG
TGGGAGGGAAGGGTCAGTTATTGGGAGCCAGCCAACCAAGAGTGGCGTCCGTTGTTCCCCTCTCCTGGACCTGGTGTGGCCCATTTGGCAACTGACACCAACACGCAAGT
GGGCTCCATATCTTTTTCCGTACTTAGCTGTACCTTTACATTATTTGGATACAGCCATTGCCATTGCTGTTTTCATCCTTCCCATTCCTTATTCCTTCTCCCAACACATG
ACTGCAGATTCCACATGGAGAGTCCCGATTTCTCCCCGCCTCACGCCGACGCATCCAGACCCTCCTTAGGGTTTCCCCTCGGCACTGCTCTTCTCCTTCTCGTCATCTTC
ACCTTGAGCGGAATCTTCTCCTGCTGCTATCACTGGGATAAACTCAGATCCCTCCGCCGTTCCGCTTCCCAACCTTTACATGATCACGATCTTCACCTCCGATCATCTCC
CTCCAAATCTAACCCTACTTCCCAGGATTTGGAGAAGAATCAGAGAGAGAGCTTGTCGGTGTTGATGCCTGGGGATTCTGTTCCGAAGTTCATTGCGATGCCATGCCCTA
GGGAGCCGCCGCGGCCGGAGATGATTGAGGTGAAAGTGGAGAAGCCGCCGAAGCCGCTGCGGATTGCGGTTCCTTTCTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGCAGAGTTGGTCGCGGCACCGGCATGGCATGATGAGCTCAGCTGGGTCCGGTTTCCCACGCCCCCTCTTCCTTCCCTTCCATAACAAAACCTTCTATCAAGTAAT
CACGCTCTCCTCCTGCGGGACCCTATGCCGCCTTCTTCTCCCTTATTCACCTCCTGGCTTTCTAATGGGCCGGACCAGGCCCAATACTAGAACCTCTTTGTCTTCTTCTT
CTTCTTCTTCTTCTTCTTACACCTTGGTTGGGATTTGCTTGGAAAATGGTGATATGGGACAGAAAAAGAAAGAAGGATATGGAAAGGGAAAGGGAGTGGGTGAAGGTTGG
TGGGAGGGAAGGGTCAGTTATTGGGAGCCAGCCAACCAAGAGTGGCGTCCGTTGTTCCCCTCTCCTGGACCTGGTGTGGCCCATTTGGCAACTGACACCAACACGCAAGT
GGGCTCCATATCTTTTTCCGTACTTAGCTGTACCTTTACATTATTTGGATACAGCCATTGCCATTGCTGTTTTCATCCTTCCCATTCCTTATTCCTTCTCCCAACACATG
ACTGCAGATTCCACATGGAGAGTCCCGATTTCTCCCCGCCTCACGCCGACGCATCCAGACCCTCCTTAGGGTTTCCCCTCGGCACTGCTCTTCTCCTTCTCGTCATCTTC
ACCTTGAGCGGAATCTTCTCCTGCTGCTATCACTGGGATAAACTCAGATCCCTCCGCCGTTCCGCTTCCCAACCTTTACATGATCACGATCTTCACCTCCGATCATCTCC
CTCCAAATCTAACCCTACTTCCCAGGATTTGGAGAAGAATCAGAGAGAGAGCTTGTCGGTGTTGATGCCTGGGGATTCTGTTCCGAAGTTCATTGCGATGCCATGCCCTA
GGGAGCCGCCGCGGCCGGAGATGATTGAGGTGAAAGTGGAGAAGCCGCCGAAGCCGCTGCGGATTGCGGTTCCTTTCTATTAG
Protein sequenceShow/hide protein sequence
MEQSWSRHRHGMMSSAGSGFPRPLFLPFHNKTFYQVITLSSCGTLCRLLLPYSPPGFLMGRTRPNTRTSLSSSSSSSSSYTLVGICLENGDMGQKKKEGYGKGKGVGEGW
WEGRVSYWEPANQEWRPLFPSPGPGVAHLATDTNTQVGSISFSVLSCTFTLFGYSHCHCCFHPSHSLFLLPTHDCRFHMESPDFSPPHADASRPSLGFPLGTALLLLVIF
TLSGIFSCCYHWDKLRSLRRSASQPLHDHDLHLRSSPSKSNPTSQDLEKNQRESLSVLMPGDSVPKFIAMPCPREPPRPEMIEVKVEKPPKPLRIAVPFY