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Clc01G18430 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G18430
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein SKIP34
Genome locationClcChr01:30961157..30961943
RNA-Seq ExpressionClc01G18430
SyntenyClc01G18430
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008440533.1 PREDICTED: protein SKIP34 [Cucumis melo]7.5e-3691.49Show/hide
Query:  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MCNGHHR LFRGS  PYQTSVPENG ASVVDNLRGRLEETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY+ RQEYVVRLLSP S
Subjt:  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

XP_011657944.1 protein SKIP34 [Cucumis sativus]3.3e-3691.49Show/hide
Query:  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MCNGHHR LFRGSL PYQTSVPENG  SVVDNLRGRLEETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY+ RQEYVVRLLSP S
Subjt:  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

XP_022950522.1 protein SKIP34 [Cucurbita moschata]3.1e-3488.42Show/hide
Query:  MCNGHHRSLFRGSLAPYQTSVPEN-GDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MCNGHHRSLFRGS++P QTSVPEN GDASVVDNLRGRL ETESRLAQVRAREA LSRLLEEMKRLVSVMEILENYLKR+Y+ RQEYVVRLL+P S
Subjt:  MCNGHHRSLFRGSLAPYQTSVPEN-GDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

XP_022978829.1 protein SKIP34 [Cucurbita maxima]8.2e-3587.23Show/hide
Query:  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MCNGHHRSLFRGS++P QTSVPENGDASVVDNLRGRL ETESRLAQVRAREA LSR+LEEMKRLVSVMEIL+NYLKR+Y  RQEYVVRLL+P S
Subjt:  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

XP_023544310.1 protein SKIP34 [Cucurbita pepo subsp. pepo]1.4e-3487.23Show/hide
Query:  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MCNGHHRSLFRG+++P QTSVPENGDASVVDNLRGRL ETESRLAQVRAREA LSRLLEEMKRLV VMEILENYLKR+Y  RQEYVVRLL+P S
Subjt:  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

TrEMBL top hitse value%identityAlignment
A0A0A0KIR5 Uncharacterized protein1.6e-3691.49Show/hide
Query:  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MCNGHHR LFRGSL PYQTSVPENG  SVVDNLRGRLEETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY+ RQEYVVRLLSP S
Subjt:  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

A0A1S3B1B8 protein SKIP343.6e-3691.49Show/hide
Query:  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MCNGHHR LFRGS  PYQTSVPENG ASVVDNLRGRLEETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY+ RQEYVVRLLSP S
Subjt:  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

A0A5D3CN14 Protein SKIP343.6e-3691.49Show/hide
Query:  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MCNGHHR LFRGS  PYQTSVPENG ASVVDNLRGRLEETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY+ RQEYVVRLLSP S
Subjt:  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

A0A6J1GF20 protein SKIP341.5e-3488.42Show/hide
Query:  MCNGHHRSLFRGSLAPYQTSVPEN-GDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MCNGHHRSLFRGS++P QTSVPEN GDASVVDNLRGRL ETESRLAQVRAREA LSRLLEEMKRLVSVMEILENYLKR+Y+ RQEYVVRLL+P S
Subjt:  MCNGHHRSLFRGSLAPYQTSVPEN-GDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

A0A6J1IV54 protein SKIP344.0e-3587.23Show/hide
Query:  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MCNGHHRSLFRGS++P QTSVPENGDASVVDNLRGRL ETESRLAQVRAREA LSR+LEEMKRLVSVMEIL+NYLKR+Y  RQEYVVRLL+P S
Subjt:  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

SwissProt top hitse value%identityAlignment
Q8GWU7 Protein SKIP341.2e-1552.13Show/hide
Query:  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MC GH++SL   S +  +    +  D SVVD+LR RL ETE+RL + RAREAELSR LE MKR VSVMEI+E +L+R++  +++ + RL SP S
Subjt:  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

Arabidopsis top hitse value%identityAlignment
AT5G65495.1 unknown protein8.3e-1752.13Show/hide
Query:  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MC GH++SL   S +  +    +  D SVVD+LR RL ETE+RL + RAREAELSR LE MKR VSVMEI+E +L+R++  +++ + RL SP S
Subjt:  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTAACGGCCACCACCGATCTTTGTTCAGAGGTAGCCTTGCTCCCTACCAGACCTCCGTACCAGAAAACGGCGACGCTTCCGTTGTGGACAATCTACGGGGTCGATT
AGAGGAAACCGAGTCACGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGATTAGTCTCTGTGATGGAGATCCTCGAGAACT
ACCTGAAACGGCAGTACAATTACCGCCAAGAATATGTGGTTCGTCTCCTCTCCCCTTCCTCGTTGATTGTATTCGCCATCAAATCTATGGATATATTCGCCCTTGATTTC
ACTTTTTTCTATAATATAATTAGTCATTTTGTAAGTATTTCTCAGAGTAACACTGGTTTCCAAAATTCTTTGGATGAAACTTTGAGAAAGTCGTCCATTTCAAGTACCGA
AGCGATTTCGCTTGGGAATGGAATCGTGGAATTGATACCATTAGCTCGTCCAATCGCAGGAGAGTTGAGTATGCCGAATGAGAGAGAATCCATGAGAAGAATGTTTTGTT
AG
mRNA sequenceShow/hide mRNA sequence
ATGTGTAACGGCCACCACCGATCTTTGTTCAGAGGTAGCCTTGCTCCCTACCAGACCTCCGTACCAGAAAACGGCGACGCTTCCGTTGTGGACAATCTACGGGGTCGATT
AGAGGAAACCGAGTCACGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGATTAGTCTCTGTGATGGAGATCCTCGAGAACT
ACCTGAAACGGCAGTACAATTACCGCCAAGAATATGTGGTTCGTCTCCTCTCCCCTTCCTCGTTGATTGTATTCGCCATCAAATCTATGGATATATTCGCCCTTGATTTC
ACTTTTTTCTATAATATAATTAGTCATTTTGTAAGTATTTCTCAGAGTAACACTGGTTTCCAAAATTCTTTGGATGAAACTTTGAGAAAGTCGTCCATTTCAAGTACCGA
AGCGATTTCGCTTGGGAATGGAATCGTGGAATTGATACCATTAGCTCGTCCAATCGCAGGAGAGTTGAGTATGCCGAATGAGAGAGAATCCATGAGAAGAATGTTTTGTT
AG
Protein sequenceShow/hide protein sequence
MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSSLIVFAIKSMDIFALDF
TFFYNIISHFVSISQSNTGFQNSLDETLRKSSISSTEAISLGNGIVELIPLARPIAGELSMPNERESMRRMFC