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Clc01G18540 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G18540
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr01:31054610..31055510
RNA-Seq ExpressionClc01G18540
SyntenyClc01G18540
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PUZ51901.1 hypothetical protein GQ55_6G228300 [Panicum hallii var. hallii]1.8e-1536.2Show/hide
Query:  PVGLHSDHRYISRVADCSTDRTGNQTGRYLPNERHFPGILIGPLLFENIVKPHTGSRVQSLSEDGGGNAREESSNSFLLHNTNPDSDWTNTRRRRRRRNI
        PV LH  H ++ RVA    D   ++  R L  +R    +L+GPL  E++V+PH    V+ L+E GGG+  EE   +    +   D +      RRR R+ 
Subjt:  PVGLHSDHRYISRVADCSTDRTGNQTGRYLPNERHFPGILIGPLLFENIVKPHTGSRVQSLSEDGGGNAREESSNSFLLHNTNPDSDWTNTRRRRRRRNI

Query:  QRPRSSYRGGLKSESRAEVMNRGRGSRSLTLKLHSDLDEIKRVGGTAGNNGSNSTFEESLETH
         R R         E RA    R R  R L L+LH+DLDE++RV G AG++G ++  +ESL+ H
Subjt:  QRPRSSYRGGLKSESRAEVMNRGRGSRSLTLKLHSDLDEIKRVGGTAGNNGSNSTFEESLETH
RLM61049.1 hypothetical protein C2845_PM14G17090 [Panicum miliaceum]1.8e-1536.2Show/hide
Query:  PVGLHSDHRYISRVADCSTDRTGNQTGRYLPNERHFPGILIGPLLFENIVKPHTGSRVQSLSEDGGGNAREESSNSFLLHNTNPDSDWTNTRRRRRRRNI
        PV LH  H ++ RVA    D   ++  R L  +R    +L+GPL  E++V+PH    V+ L+E GGG+  EE   +    +   D +      RRR R+ 
Subjt:  PVGLHSDHRYISRVADCSTDRTGNQTGRYLPNERHFPGILIGPLLFENIVKPHTGSRVQSLSEDGGGNAREESSNSFLLHNTNPDSDWTNTRRRRRRRNI

Query:  QRPRSSYRGGLKSESRAEVMNRGRGSRSLTLKLHSDLDEIKRVGGTAGNNGSNSTFEESLETH
         R R         E RA    R R  R L L+LH+DLDE++RV G AG++G ++  +ESL+ H
Subjt:  QRPRSSYRGGLKSESRAEVMNRGRGSRSLTLKLHSDLDEIKRVGGTAGNNGSNSTFEESLETH
TKY58708.1 hypothetical protein E2542_SST15777 [Spatholobus suberectus]1.1e-0460.98Show/hide
Query:  GIKKTSWNWSSSHWKPRDGNEGRRLWRNNEERWVCETYANR
        G KKT+W+  SSHW P DGN  RRLW  +EERW  ETYA++
Subjt:  GIKKTSWNWSSSHWKPRDGNEGRRLWRNNEERWVCETYANR
TrEMBL top hitse value%identityAlignment
A0A2T7D8G0 Uncharacterized protein8.8e-1636.2Show/hide
Query:  PVGLHSDHRYISRVADCSTDRTGNQTGRYLPNERHFPGILIGPLLFENIVKPHTGSRVQSLSEDGGGNAREESSNSFLLHNTNPDSDWTNTRRRRRRRNI
        PV LH  H ++ RVA    D   ++  R L  +R    +L+GPL  E++V+PH    V+ L+E GGG+  EE   +    +   D +      RRR R+ 
Subjt:  PVGLHSDHRYISRVADCSTDRTGNQTGRYLPNERHFPGILIGPLLFENIVKPHTGSRVQSLSEDGGGNAREESSNSFLLHNTNPDSDWTNTRRRRRRRNI

Query:  QRPRSSYRGGLKSESRAEVMNRGRGSRSLTLKLHSDLDEIKRVGGTAGNNGSNSTFEESLETH
         R R         E RA    R R  R L L+LH+DLDE++RV G AG++G ++  +ESL+ H
Subjt:  QRPRSSYRGGLKSESRAEVMNRGRGSRSLTLKLHSDLDEIKRVGGTAGNNGSNSTFEESLETH
A0A3L6PPG3 Uncharacterized protein8.8e-1636.2Show/hide
Query:  PVGLHSDHRYISRVADCSTDRTGNQTGRYLPNERHFPGILIGPLLFENIVKPHTGSRVQSLSEDGGGNAREESSNSFLLHNTNPDSDWTNTRRRRRRRNI
        PV LH  H ++ RVA    D   ++  R L  +R    +L+GPL  E++V+PH    V+ L+E GGG+  EE   +    +   D +      RRR R+ 
Subjt:  PVGLHSDHRYISRVADCSTDRTGNQTGRYLPNERHFPGILIGPLLFENIVKPHTGSRVQSLSEDGGGNAREESSNSFLLHNTNPDSDWTNTRRRRRRRNI

Query:  QRPRSSYRGGLKSESRAEVMNRGRGSRSLTLKLHSDLDEIKRVGGTAGNNGSNSTFEESLETH
         R R         E RA    R R  R L L+LH+DLDE++RV G AG++G ++  +ESL+ H
Subjt:  QRPRSSYRGGLKSESRAEVMNRGRGSRSLTLKLHSDLDEIKRVGGTAGNNGSNSTFEESLETH
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGCTGCGAAGCCGTTACGAGCATCGCACGGTTCACCGTCAACGACGAACCACGCCACAGACTCGTCACGCCTTCGCCACGTGCCATCTGGGTTATGGCGTCGACC
ACGCTTTTGTAGTTCCGCCGCTGCGCTAGTGCCGCCCGTCGGCTTGCATTCGGACCATCGCTACATCAGCCGGGTTGCCGACTGCAGCACCGACCGCACCGGCAATCAAA
CCGGCCGATATCTTCCGAATGAGCGGCATTTTCCCGGTATCCTGATCGGTCCACTTCTGTTTGAGAATATCGTAAAGCCCCATACGGGTAGTCGAGTACAGAGTCTGTCG
GAGGACGGTGGCGGAAACGCCAGAGAAGAGAGCAGCAACTCCTTCCTGCTGCACAATACGAACCCCGACAGCGATTGGACCAACACGCGCCGCCGGAGGCGGCGGAGGAA
TATTCAAAGACCTCGGAGCAGTTACAGAGGTGGTTTGAAAAGCGAGAGCAGGGCGGAGGTTATGAACCGCGGCCGTGGGAGCAGGAGTCTCACCCTGAAGTTGCATTCGG
ACCTTGATGAGATCAAGCGGGTGGGTGGAACAGCCGGCAACAATGGAAGCAATTCCACCTTCGAGGAATCCCTTGAAACCCATTTTCCAGGAATCGAAATTTTCTCGGGA
AACAAACAAGAGAGAAAATGGAATTCGAAACAGAGAGAAATATGGAGATCTGATCTGGGAAACGGAAAAGACGGGGAAAGGGGAATTAAAAAGACCAGTTGGAATTGGAG
TTCATCTCACTGGAAACCAAGAGATGGGAATGAAGGCCGAAGGCTATGGAGGAATAATGAGGAACGATGGGTCTGTGAGACATATGCTAACAGAGGACTATGTAATACGC
AAAAGAATGAATGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGAGCTGCGAAGCCGTTACGAGCATCGCACGGTTCACCGTCAACGACGAACCACGCCACAGACTCGTCACGCCTTCGCCACGTGCCATCTGGGTTATGGCGTCGACC
ACGCTTTTGTAGTTCCGCCGCTGCGCTAGTGCCGCCCGTCGGCTTGCATTCGGACCATCGCTACATCAGCCGGGTTGCCGACTGCAGCACCGACCGCACCGGCAATCAAA
CCGGCCGATATCTTCCGAATGAGCGGCATTTTCCCGGTATCCTGATCGGTCCACTTCTGTTTGAGAATATCGTAAAGCCCCATACGGGTAGTCGAGTACAGAGTCTGTCG
GAGGACGGTGGCGGAAACGCCAGAGAAGAGAGCAGCAACTCCTTCCTGCTGCACAATACGAACCCCGACAGCGATTGGACCAACACGCGCCGCCGGAGGCGGCGGAGGAA
TATTCAAAGACCTCGGAGCAGTTACAGAGGTGGTTTGAAAAGCGAGAGCAGGGCGGAGGTTATGAACCGCGGCCGTGGGAGCAGGAGTCTCACCCTGAAGTTGCATTCGG
ACCTTGATGAGATCAAGCGGGTGGGTGGAACAGCCGGCAACAATGGAAGCAATTCCACCTTCGAGGAATCCCTTGAAACCCATTTTCCAGGAATCGAAATTTTCTCGGGA
AACAAACAAGAGAGAAAATGGAATTCGAAACAGAGAGAAATATGGAGATCTGATCTGGGAAACGGAAAAGACGGGGAAAGGGGAATTAAAAAGACCAGTTGGAATTGGAG
TTCATCTCACTGGAAACCAAGAGATGGGAATGAAGGCCGAAGGCTATGGAGGAATAATGAGGAACGATGGGTCTGTGAGACATATGCTAACAGAGGACTATGTAATACGC
AAAAGAATGAATGGTGA
Protein sequenceShow/hide protein sequence
MRAAKPLRASHGSPSTTNHATDSSRLRHVPSGLWRRPRFCSSAAALVPPVGLHSDHRYISRVADCSTDRTGNQTGRYLPNERHFPGILIGPLLFENIVKPHTGSRVQSLS
EDGGGNAREESSNSFLLHNTNPDSDWTNTRRRRRRRNIQRPRSSYRGGLKSESRAEVMNRGRGSRSLTLKLHSDLDEIKRVGGTAGNNGSNSTFEESLETHFPGIEIFSG
NKQERKWNSKQREIWRSDLGNGKDGERGIKKTSWNWSSSHWKPRDGNEGRRLWRNNEERWVCETYANRGLCNTQKNEW