CuGenDBv2

Gene ID	Clc01G19110
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	protein TAPETUM DETERMINANT 1-like
Genome location	ClcChr01:31497767..31498958
RNA-Seq Expression	Clc01G19110
Synteny	Clc01G19110
Gene Ontology terms	NA
InterPro domains	IPR040361 - Tapetum determinant 1

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7026828.1 Protein TAPETUM DETERMINANT 1, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.7e-45

68.12

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Query:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT
        MA F+KL  ALLF+SL+                +K NCQC+ N+I ISQ+M+GFQIHGMT+W VTISNNCLCSQSEVK+DCKGFQTT+SIDPSILA++DT
Subjt:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT

Query:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS
        ECLVNNGLPIF S P+ FTYA+DPKFDF  ISSQI+CS
Subjt:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS

XP_008440637.1 PREDICTED: protein TAPETUM DETERMINANT 1-like [Cucumis melo]

6.6e-45

69.57

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Query:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT
        MAI VKL+ ALL LS ISTG                NCQC+LNNITISQ+M+GFQIHGMT+W VTI+NNC+CSQS++K+DCKGF TT SIDPSIL+ISD 
Subjt:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT

Query:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS
        ECLVNNG PIF+SKPITF YA+ PKF+F PISSQISCS
Subjt:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS

XP_023004032.1 protein TAPETUM DETERMINANT 1-like [Cucurbita maxima]

1.4e-42

66.67

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Query:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT
        MA F KL  ALLF+SL+                HK NCQC+ N+I I Q MSGFQIHGMT+W VTISN CLCSQSEVK+DC+GFQTT+SIDPS+LA++D+
Subjt:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT

Query:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS
        ECLVNNGLPIF S  ITFTYA DPKFDF  ISSQI+CS
Subjt:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS

XP_031742370.1 uncharacterized protein At1g05835-like [Cucumis sativus]

1.5e-44

68.84

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Query:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT
        M IF KL+ ALL LSLISTG                NCQC LNNI ISQ M+GFQIHGMT+WKVTI+NNC+CSQS++K+DCKGF TT SIDPSILAISD+
Subjt:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT

Query:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS
        ECLVNNG PIF+S+PITF YA+ PKF+F P+SSQISCS
Subjt:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS

XP_038881121.1 uncharacterized protein At1g05835-like [Benincasa hispida]

2.1e-51

76.81

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Query:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT
        MAIFVKLVTALL LSL+STG                NCQC+LNNITISQRM+GFQIHGMT+WKVTISNNC CSQSEVK+DCKGFQTTESIDPSILA+ DT
Subjt:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT

Query:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS
        ECLVNNGLPIF+S PITF+YA+DP+F+F PISSQISCS
Subjt:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KLZ6 Uncharacterized protein

7.1e-45

68.84

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Query:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT
        M IF KL+ ALL LSLISTG                NCQC LNNI ISQ M+GFQIHGMT+WKVTI+NNC+CSQS++K+DCKGF TT SIDPSILAISD+
Subjt:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT

Query:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS
        ECLVNNG PIF+S+PITF YA+ PKF+F P+SSQISCS
Subjt:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS

A0A1S3B1L8 protein TAPETUM DETERMINANT 1-like

3.2e-45

69.57

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Query:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT
        MAI VKL+ ALL LS ISTG                NCQC+LNNITISQ+M+GFQIHGMT+W VTI+NNC+CSQS++K+DCKGF TT SIDPSIL+ISD 
Subjt:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT

Query:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS
        ECLVNNG PIF+SKPITF YA+ PKF+F PISSQISCS
Subjt:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS

A0A5D3CMA8 Protein TAPETUM DETERMINANT 1-like

3.2e-45

69.57

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Query:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT
        MAI VKL+ ALL LS ISTG                NCQC+LNNITISQ+M+GFQIHGMT+W VTI+NNC+CSQS++K+DCKGF TT SIDPSIL+ISD 
Subjt:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT

Query:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS
        ECLVNNG PIF+SKPITF YA+ PKF+F PISSQISCS
Subjt:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS

A0A6J1HGA0 uncharacterized protein At1g05835-like

5.7e-42

65.22

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Query:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT
        MA   KL  ALLF+S +S                K N QC L+NITI Q M+GFQIHGMT+W  T+SNNCLCSQSEVK+DC+GFQTT+SIDP ILAI+DT
Subjt:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT

Query:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS
        ECLVNNGLPIF+S PITFTYA++P+F+F PISSQI+CS
Subjt:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS

A0A6J1KP98 protein TAPETUM DETERMINANT 1-like

6.7e-43

66.67

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Query:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT
        MA F KL  ALLF+SL+                HK NCQC+ N+I I Q MSGFQIHGMT+W VTISN CLCSQSEVK+DC+GFQTT+SIDPS+LA++D+
Subjt:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT

Query:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS
        ECLVNNGLPIF S  ITFTYA DPKFDF  ISSQI+CS
Subjt:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS

SwissProt top hits

e value

%identity

Alignment

A8MS78 Uncharacterized protein At1g05835

1.6e-04

28.4

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Query:  QWKVTISNNC-LCSQSEVKVDCKGFQTTESIDPS---ILAISDTECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISC
        +++V + N C +C    +++ C+GF  +  +DP+   +L+ S   C+VN+GLP+   + ++F Y+   +F   P+S    C
Subjt:  QWKVTISNNC-LCSQSEVKVDCKGFQTTESIDPS---ILAISDTECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISC

Arabidopsis top hits

e value

%identity

Alignment

AT1G05835.1 PHD finger protein

1.1e-05

28.4

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Query:  QWKVTISNNC-LCSQSEVKVDCKGFQTTESIDPS---ILAISDTECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISC
        +++V + N C +C    +++ C+GF  +  +DP+   +L+ S   C+VN+GLP+   + ++F Y+   +F   P+S    C
Subjt:  QWKVTISNNC-LCSQSEVKVDCKGFQTTESIDPS---ILAISDTECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISC

AT4G32090.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein

6.0e-12

29.71

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Query:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT
        MA  +K    +L LS++S G+                C C    I I    +G +I G  +WKVT+ N C C Q  V + C GF   + + P +L     
Subjt:  MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDT

Query:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS
         CL+  G  + +     FTYA  P + F P+ S++  S
Subjt:  ECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS

Sequences

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CDS sequence

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ATGGCCATCTTCGTCAAGCTTGTCACTGCTCTTCTCTTCCTCTCTCTCATTTCCACTGGTATAAATATTGAATTTCGAGTCCATTTTGTCTTTTTCTTCCATAAACGAAA
TTGCCAATGTTTATTGAACAACATAACAATCAGCCAAAGGATGAGTGGATTTCAGATCCATGGAATGACACAATGGAAAGTGACAATAAGCAACAACTGTTTGTGTTCTC
AGTCAGAGGTGAAAGTAGATTGCAAAGGATTTCAAACAACTGAAAGCATTGATCCTTCCATCTTGGCCATTTCTGATACTGAATGTTTGGTCAACAATGGCCTCCCAATT
TTCAGTTCCAAACCCATCACCTTCACTTATGCACGAGACCCTAAATTCGATTTCAACCCAATTTCCTCCCAGATTTCTTGTTCTTAA

mRNA sequence

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Protein sequence

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MAIFVKLVTALLFLSLISTGINIEFRVHFVFFFHKRNCQCLLNNITISQRMSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPI
FSSKPITFTYARDPKFDFNPISSQISCS

Clc01G19110 (gene) of Watermelon (cordophanus) v2 genome