; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G19200 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G19200
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionE3 ubiquitin-protein ligase RHA2B-like
Genome locationClcChr01:31565211..31565857
RNA-Seq ExpressionClc01G19200
SyntenyClc01G19200
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036272.1 putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa]2.2e-8097.4Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKR+ITTAQFLKLIE+KNPTIRFSNKVT S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG

XP_008440648.1 PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis melo]8.2e-8092.64Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKR+ITTAQFLKLIE+KNPTIRFSNKVT S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH---GKYCFLP
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH    +Y  +P
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH---GKYCFLP

XP_022132528.1 E3 ubiquitin-protein ligase RHA2B-like [Momordica charantia]1.0e-7793.51Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRP ADKR+ITT Q+ KLIEE+NPTIRFSNK+TSS ADQCAVCLSEFEEG+KVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
        CLDNWLKLCFATCPLCRSKVLPDD+VAGYHRLRDRVEYDGSDEELIFLLSALHG
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG

XP_022963436.1 E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita moschata]1.5e-7894.81Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRPN DKR+I TAQFLKLIEEKNPTIRFSNK+TSS ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG

XP_038883588.1 E3 ubiquitin-protein ligase RHA2B-like [Benincasa hispida]7.4e-8197.4Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKR++TTAQFLKLIEEKNPTIRFSNK+TSS ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG

TrEMBL top hitse value%identityAlignment
A0A0A0KM08 RING-type domain-containing protein6.8e-8096.1Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPN+DKR+ITTAQF KLIE+KNPTIRFSNKVT S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG

A0A1S3B160 probable E3 ubiquitin-protein ligase RHA2B4.0e-8092.64Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKR+ITTAQFLKLIE+KNPTIRFSNKVT S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH---GKYCFLP
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH    +Y  +P
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH---GKYCFLP

A0A5A7SYH1 Putative E3 ubiquitin-protein ligase RHA2B1.0e-8097.4Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKR+ITTAQFLKLIE+KNPTIRFSNKVT S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG

A0A6J1BWI1 E3 ubiquitin-protein ligase RHA2B-like4.8e-7893.51Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRP ADKR+ITT Q+ KLIEE+NPTIRFSNK+TSS ADQCAVCLSEFEEG+KVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
        CLDNWLKLCFATCPLCRSKVLPDD+VAGYHRLRDRVEYDGSDEELIFLLSALHG
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG

A0A6J1HG49 E3 ubiquitin-protein ligase RHA2B-like isoform X17.5e-7994.81Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRPN DKR+I TAQFLKLIEEKNPTIRFSNK+TSS ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG

SwissProt top hitse value%identityAlignment
Q0VD51 E3 ubiquitin-protein ligase RNF131.1e-1050Show/hide
Query:  DQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP
        D CA+CL E+E+G+K+R L C+H +H  C+D WL     TCP+C+ KV+P
Subjt:  DQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP

Q8LPN7 E3 ubiquitin-protein ligase RING1-like9.9e-1243.94Show/hide
Query:  PTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD
        PT++ +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR ++  DD
Subjt:  PTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD

Q9XF92 Brassinosteroid-responsive RING protein 16.4e-1143.42Show/hide
Query:  LIEEKNPTIRFSNKVTS--SFADQCAVCLSEFEEGEKVRKLQ-CNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDI
        LI E  P I+F     S     + CAVCL EFE  +++R L+ C H FH+ CLD W+     TCPLCR+  +PD++
Subjt:  LIEEKNPTIRFSNKVTS--SFADQCAVCLSEFEEGEKVRKLQ-CNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDI

Q9ZT50 E3 ubiquitin-protein ligase RHA2A2.4e-1356.14Show/hide
Query:  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR
        C VCLS+ +EGE+VRKL+C H FHK CL+ WL     TCPLCRS ++ DD V+   R
Subjt:  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR

Q9ZU51 E3 ubiquitin-protein ligase RHA2B2.8e-1439.6Show/hide
Query:  LLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVL
        LL  F   +R++  L P++   ++ T+    L ++ N    FS + + + A  C VCLS+ + GE+VRKL C H FHK CL+ WL+     CPLCRS +L
Subjt:  LLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVL

Query:  P
        P
Subjt:  P

Arabidopsis top hitse value%identityAlignment
AT1G15100.1 RING-H2 finger A2A1.7e-1456.14Show/hide
Query:  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR
        C VCLS+ +EGE+VRKL+C H FHK CL+ WL     TCPLCRS ++ DD V+   R
Subjt:  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR

AT2G01150.1 RING-H2 finger protein 2B2.0e-1539.6Show/hide
Query:  LLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVL
        LL  F   +R++  L P++   ++ T+    L ++ N    FS + + + A  C VCLS+ + GE+VRKL C H FHK CL+ WL+     CPLCRS +L
Subjt:  LLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVL

Query:  P
        P
Subjt:  P

AT3G19950.1 RING/U-box superfamily protein7.0e-1343.94Show/hide
Query:  PTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD
        PT++ +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR ++  DD
Subjt:  PTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD

AT3G61460.1 brassinosteroid-responsive RING-H24.6e-1243.42Show/hide
Query:  LIEEKNPTIRFSNKVTS--SFADQCAVCLSEFEEGEKVRKLQ-CNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDI
        LI E  P I+F     S     + CAVCL EFE  +++R L+ C H FH+ CLD W+     TCPLCR+  +PD++
Subjt:  LIEEKNPTIRFSNKVTS--SFADQCAVCLSEFEEGEKVRKLQ-CNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDI

AT5G45290.1 RING/U-box superfamily protein2.0e-1241.43Show/hide
Query:  IRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYH
        I+   K  S    QC +CL E+EE + +R L C+H FHK C+D WLK     CPLCR  +   D  +  H
Subjt:  IRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCTTCACCCTTTTACTTCTCGAATTCGTTATTCTCATTCGTACCATCTTCGGCTTGAG
ACCTAACGCCGACAAGCGCATAATCACGACGGCGCAGTTTTTGAAACTCATCGAGGAGAAGAATCCCACGATCCGATTCTCCAATAAGGTCACCTCAAGTTTTGCCGATC
AGTGTGCCGTTTGCCTCTCTGAATTTGAGGAAGGGGAGAAGGTACGGAAATTGCAATGCAACCACACTTTTCATAAGGATTGCCTCGATAATTGGTTGAAACTCTGTTTC
GCTACTTGTCCGCTTTGCCGTAGTAAGGTTTTGCCGGACGATATCGTCGCCGGCTACCATAGACTGCGAGACCGTGTAGAGTACGACGGCAGTGACGAGGAGCTCATCTT
TTTGTTATCGGCATTACATGGGAAATATTGTTTTCTCCCTTCAGTGACGAGCAATAGCGTTAGGGAACAGCTTGTTTCTGGTTCGATTGATCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCTTCACCCTTTTACTTCTCGAATTCGTTATTCTCATTCGTACCATCTTCGGCTTGAG
ACCTAACGCCGACAAGCGCATAATCACGACGGCGCAGTTTTTGAAACTCATCGAGGAGAAGAATCCCACGATCCGATTCTCCAATAAGGTCACCTCAAGTTTTGCCGATC
AGTGTGCCGTTTGCCTCTCTGAATTTGAGGAAGGGGAGAAGGTACGGAAATTGCAATGCAACCACACTTTTCATAAGGATTGCCTCGATAATTGGTTGAAACTCTGTTTC
GCTACTTGTCCGCTTTGCCGTAGTAAGGTTTTGCCGGACGATATCGTCGCCGGCTACCATAGACTGCGAGACCGTGTAGAGTACGACGGCAGTGACGAGGAGCTCATCTT
TTTGTTATCGGCATTACATGGGAAATATTGTTTTCTCCCTTCAGTGACGAGCAATAGCGTTAGGGAACAGCTTGTTTCTGGTTCGATTGATCTGTAG
Protein sequenceShow/hide protein sequence
MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCF
ATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGKYCFLPSVTSNSVREQLVSGSIDL