CuGenDBv2

Gene ID	Clc01G19485
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Photosystem I P700 chlorophyll a apoprotein A2
Genome location	ClcChr01:31747720..31748468
RNA-Seq Expression	Clc01G19485
Synteny	Clc01G19485
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0022900 - electron transport chain (biological process) GO:0009522 - photosystem I (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR001280 - Photosystem I PsaA/PsaB IPR036408 - Photosystem I PsaA/PsaB superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

DAD49723.1 TPA_asm: hypothetical protein HUJ06_000153 [Nelumbo nucifera]

8.9e-13

61.84

Show/hide

Query:  TWSRKGSDVGECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM
        T+S  G  +G    G  +     +       LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Subjt:  TWSRKGSDVGECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM

KAF8042378.1 hypothetical protein BT93_A0873 [Corymbia citriodora subsp. variegata]

8.9e-13

95.56

Show/hide

Query:  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM
        LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QYM
Subjt:  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM

QTJ25520.1 PsaB [Impatiens chlorosepala]

6.8e-13

68.66

Show/hide

Query:  GECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM
        G    G+T ++  I +  +   LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Subjt:  GECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM

QTJ26054.1 PsaB [Impatiens walleriana]

1.2e-12

68.66

Show/hide

Query:  GECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM
        G    G+T ++  I +  +   LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Subjt:  GECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM

YP_009828929.1 PsaB [Impatiens hawkeri]

1.2e-12

68.66

Show/hide

Query:  GECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM
        G    G+T ++  I +  +   LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Subjt:  GECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM

TrEMBL top hits

e value

%identity

Alignment

A0A0A6Z868 Photosystem I P700 chlorophyll a apoprotein A2

1.3e-12

93.33

Show/hide

Query:  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM
        LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Subjt:  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM

A0A1P8J737 Photosystem I P700 chlorophyll a apoprotein A2

1.3e-12

93.33

Show/hide

Query:  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM
        LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Subjt:  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM

A0A411L685 Photosystem I P700 chlorophyll a apoprotein A2

5.6e-13

68.66

Show/hide

Query:  GECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM
        G    G+T ++  I +  +   LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Subjt:  GECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM

A0A6M3QGU6 Photosystem I P700 chlorophyll a apoprotein A2

5.6e-13

68.66

Show/hide

Query:  GECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM
        G    G+T ++  I +  +   LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Subjt:  GECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM

B2LBF7 Photosystem I (Fragment)

7.4e-13

68.66

Show/hide

Query:  GECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM
        G    G+T ++  I +  +   LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Subjt:  GECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM

SwissProt top hits

e value

%identity

Alignment

A1EA07 Photosystem I P700 chlorophyll a apoprotein A2

3.4e-15

93.33

Show/hide

Query:  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM
        LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Subjt:  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM

A4QJB4 Photosystem I P700 chlorophyll a apoprotein A2

3.4e-15

93.33

Show/hide

Query:  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM
        LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Subjt:  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM

A4QJJ8 Photosystem I P700 chlorophyll a apoprotein A2

3.4e-15

93.33

Show/hide

Query:  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM
        LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Subjt:  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM

A4QK17 Photosystem I P700 chlorophyll a apoprotein A2

3.4e-15

93.33

Show/hide

Query:  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM
        LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Subjt:  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM

Q33332 Photosystem I P700 chlorophyll a apoprotein A2

3.4e-15

93.33

Show/hide

Query:  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM
        LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Subjt:  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM

Arabidopsis top hits

e value

%identity

Alignment

ATCG00340.1 Photosystem I, PsaA/PsaB protein

2.4e-16

93.33

Show/hide

Query:  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM
        LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Subjt:  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM

ATCG00350.1 Photosystem I, PsaA/PsaB protein

3.0e-06

37.84

Show/hide

Query:  SRKGSDVGECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM
        + KG   G+   G  E    IL       L L LA LG +T +VA HMYS+P Y ++A D+  Q +L+TH+ ++
Subjt:  SRKGSDVGECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTGATTGGTGGACTCACGTGGAGTCGAAAAGGAAGTGATGTAGGAGAGTGTGACTCTGGTAATACGGAAATATTCGGGAAAATTTTGGACGTTTTCGTGGGGAAGTC
CTTAGGTCTTGCTTTAGCCTCTTTAGGAGTTATTACTTCCTTGGTAGCTCAACACATGTACTCTTTACCTGCTTATGCGTTCATAGCACAAGACTTTACTATTCAAGCTG
CGTTATATACCCATAACCAATACATGAAATGGCACTTGGATCAGAGGCTGAGGAAATATGTAATTTCTGTTAGAAAACGAAAAGTCAGAAGAGGTATTGAATGTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVIGGLTWSRKGSDVGECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYMKWHLDQRLRKYVISVRKRKVRRGIEC

Clc01G19485 (gene) of Watermelon (cordophanus) v2 genome