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Clc01G19840 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G19840
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr01:31953372..31953865
RNA-Seq ExpressionClc01G19840
SyntenyClc01G19840
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036218.1 hypothetical protein E6C27_scaffold18G00150 [Cucumis melo var. makuwa]2.5e-1388.46Show/hide
Query:  LYHISHSAAAATMAKEDKD-NIWRDRQRQRLIATFLKNQLRDFRKTTLDSVS
        L HISHSAAAATMA EDKD NIWRDRQRQ LIATFLKNQLR+FRKTT DSVS
Subjt:  LYHISHSAAAATMAKEDKD-NIWRDRQRQRLIATFLKNQLRDFRKTTLDSVS
KGN48843.1 hypothetical protein Csa_004016 [Cucumis sativus]1.5e-1047.5Show/hide
Query:  LYHISHSAAAATMAKEDKD-NIWRDRQRQRLIATFLKNQLRDFRKTTLD---------------------------------------SVSRQ------R
        L HISHSA AA +A EDKD NIWRDRQRQ LI TF KNQ R+F KTT D                                       S SRQ      R
Subjt:  LYHISHSAAAATMAKEDKD-NIWRDRQRQRLIATFLKNQLRDFRKTTLD---------------------------------------SVSRQ------R

Query:  HRFLIFPNSSETLLLNRLFR
        H FLIFPNSSETLLL+ L R
Subjt:  HRFLIFPNSSETLLLNRLFR
TrEMBL top hitse value%identityAlignment
A0A0A0KH12 Uncharacterized protein7.4e-1147.5Show/hide
Query:  LYHISHSAAAATMAKEDKD-NIWRDRQRQRLIATFLKNQLRDFRKTTLD---------------------------------------SVSRQ------R
        L HISHSA AA +A EDKD NIWRDRQRQ LI TF KNQ R+F KTT D                                       S SRQ      R
Subjt:  LYHISHSAAAATMAKEDKD-NIWRDRQRQRLIATFLKNQLRDFRKTTLD---------------------------------------SVSRQ------R

Query:  HRFLIFPNSSETLLLNRLFR
        H FLIFPNSSETLLL+ L R
Subjt:  HRFLIFPNSSETLLLNRLFR
A0A5A7T057 Uncharacterized protein1.2e-1388.46Show/hide
Query:  LYHISHSAAAATMAKEDKD-NIWRDRQRQRLIATFLKNQLRDFRKTTLDSVS
        L HISHSAAAATMA EDKD NIWRDRQRQ LIATFLKNQLR+FRKTT DSVS
Subjt:  LYHISHSAAAATMAKEDKD-NIWRDRQRQRLIATFLKNQLRDFRKTTLDSVS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCATTATTTCTGTGCATAATGCTTTGATCGAGCTCCAACTCTACCATATTTCCCATTCTGCAGCCGCAGCCACCATGGCCAAGGAGGATAAAGACAAT
ATCTGGAGAGATCGGCAAAGACAAAGACTAATTGCTACCTTTCTCAAAAACCAGCTTAGAGATTTCAGGAAAACAACACTAGATTCGGTATCTCGCCAGCGGCAC
AGGTTTCTTATATTTCCCAATAGTTCTGAAACCCTTCTCCTCAATCGGTTGTTTCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCCATTATTTCTGTGCATAATGCTTTGATCGAGCTCCAACTCTACCATATTTCCCATTCTGCAGCCGCAGCCACCATGGCCAAGGAGGATAAAGACAAT
ATCTGGAGAGATCGGCAAAGACAAAGACTAATTGCTACCTTTCTCAAAAACCAGCTTAGAGATTTCAGGAAAACAACACTAGATTCGGTATCTCGCCAGCGGCAC
AGGTTTCTTATATTTCCCAATAGTTCTGAAACCCTTCTCCTCAATCGGTTGTTTCGATGA
Protein sequenceShow/hide protein sequence
MAAIISVHNALIELQLYHISHSAAAATMAKEDKDNIWRDRQRQRLIATFLKNQLRDFRKTTLDSVSRQRHRFLIFPNSSETLLLNRLFR