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Clc01G20470 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G20470
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransmembrane protein
Genome locationClcChr01:32384372..32385462
RNA-Seq ExpressionClc01G20470
SyntenyClc01G20470
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135030.1 uncharacterized protein LOC101202736 [Cucumis sativus]1.2e-7884.62Show/hide
Query:  MEAISLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPPETVEVRFRKRSRRRSKQEREDGGATGNGR
        ME+ISLHQ LASKPPL TINPQKF P S  QI FP+LRHQR LRIKPINA  T TDGDT  PQVPP ITPPETVEVRFRKRSRRRSKQEREDG A GNGR
Subjt:  MEAISLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPPETVEVRFRKRSRRRSKQEREDGGATGNGR

Query:  PRKAPVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG
        PRKA  E+GS K KKWE+MSV EK ME+YMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPT+VFKG
Subjt:  PRKAPVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG

XP_008440811.1 PREDICTED: uncharacterized protein LOC103485119 [Cucumis melo]7.8e-7885.16Show/hide
Query:  MEAISLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPPETVEVRFRKRSRRRSKQEREDGGATGNGR
        ME+ISLHQ LASKPPL TINPQKF   S  QI FPSLR QR LRIKPINA  TDTDGDT  PQVPP ITPPETVEVRFRKRSRRRSK+EREDG A GNGR
Subjt:  MEAISLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPPETVEVRFRKRSRRRSKQEREDGGATGNGR

Query:  PRKAPVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG
        PRKA VE+ S K KKWE+MSV EKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPT+VFKG
Subjt:  PRKAPVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG

XP_022950633.1 uncharacterized protein LOC111453672 [Cucurbita moschata]9.6e-7681.87Show/hide
Query:  MEAISLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPPETVEVRFRKRSRRRSKQEREDGGATGNGR
        MEA SLH+FLASKPPLLTI+P KF P S NQ+ F SLRHQ+ LRIKPINA  TDTDGD+  PQVPPAITPPETV+VRFRKRSRRRSKQE EDG A GN  
Subjt:  MEAISLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPPETVEVRFRKRSRRRSKQEREDGGATGNGR

Query:  PRKAPVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG
         RKAPVEI S KPKKWE+M + EKA ELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPT++FKG
Subjt:  PRKAPVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG

XP_023544554.1 uncharacterized protein LOC111804097 [Cucurbita pepo subsp. pepo]1.5e-7682.42Show/hide
Query:  MEAISLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPPETVEVRFRKRSRRRSKQEREDGGATGNGR
        MEA SLH+FLASKPPLLTI+P KF P S NQ+ F SLRHQ+ LRIKPINA  TDTDGD+  PQVPPAITPPETV+VRFRKRSRRRSKQE EDG A GN R
Subjt:  MEAISLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPPETVEVRFRKRSRRRSKQEREDGGATGNGR

Query:  PRKAPVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG
         RKAPVEI S KPKKWE+M + EKA ELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPT++FKG
Subjt:  PRKAPVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG

XP_038882758.1 uncharacterized protein LOC120073915 [Benincasa hispida]6.2e-8388.04Show/hide
Query:  MEAISLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPPETVEVRFRKRSRRRSKQERED--GGATGN
        MEAISLH+FLASKPPLLTINP K  PISHNQI FPSLRH RL RIKPINA  TDTDGDT  P V PAITPPETVEVRFRKRSRRR KQERED  GGA GN
Subjt:  MEAISLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPPETVEVRFRKRSRRRSKQERED--GGATGN

Query:  GRPRKAPVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG
        GRPRKAPVEIGS+KPKKWE+MSVGEKAME+YMGEKGLLFWLNKFAYASIFIMIGGW++FRFVGPSLNLYQLDTPPLSPTAVFKG
Subjt:  GRPRKAPVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG

TrEMBL top hitse value%identityAlignment
A0A0A0KME2 Uncharacterized protein5.8e-7984.62Show/hide
Query:  MEAISLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPPETVEVRFRKRSRRRSKQEREDGGATGNGR
        ME+ISLHQ LASKPPL TINPQKF P S  QI FP+LRHQR LRIKPINA  T TDGDT  PQVPP ITPPETVEVRFRKRSRRRSKQEREDG A GNGR
Subjt:  MEAISLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPPETVEVRFRKRSRRRSKQEREDGGATGNGR

Query:  PRKAPVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG
        PRKA  E+GS K KKWE+MSV EK ME+YMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPT+VFKG
Subjt:  PRKAPVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG

A0A1S3B215 uncharacterized protein LOC1034851193.8e-7885.16Show/hide
Query:  MEAISLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPPETVEVRFRKRSRRRSKQEREDGGATGNGR
        ME+ISLHQ LASKPPL TINPQKF   S  QI FPSLR QR LRIKPINA  TDTDGDT  PQVPP ITPPETVEVRFRKRSRRRSK+EREDG A GNGR
Subjt:  MEAISLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPPETVEVRFRKRSRRRSKQEREDGGATGNGR

Query:  PRKAPVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG
        PRKA VE+ S K KKWE+MSV EKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPT+VFKG
Subjt:  PRKAPVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG

A0A5A7SKL6 Putative transmembrane protein3.8e-7885.16Show/hide
Query:  MEAISLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPPETVEVRFRKRSRRRSKQEREDGGATGNGR
        ME+ISLHQ LASKPPL TINPQKF   S  QI FPSLR QR LRIKPINA  TDTDGDT  PQVPP ITPPETVEVRFRKRSRRRSK+EREDG A GNGR
Subjt:  MEAISLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPPETVEVRFRKRSRRRSKQEREDGGATGNGR

Query:  PRKAPVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG
        PRKA VE+ S K KKWE+MSV EKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPT+VFKG
Subjt:  PRKAPVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG

A0A6J1GFF1 uncharacterized protein LOC1114536724.6e-7681.87Show/hide
Query:  MEAISLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPPETVEVRFRKRSRRRSKQEREDGGATGNGR
        MEA SLH+FLASKPPLLTI+P KF P S NQ+ F SLRHQ+ LRIKPINA  TDTDGD+  PQVPPAITPPETV+VRFRKRSRRRSKQE EDG A GN  
Subjt:  MEAISLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPPETVEVRFRKRSRRRSKQEREDGGATGNGR

Query:  PRKAPVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG
         RKAPVEI S KPKKWE+M + EKA ELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPT++FKG
Subjt:  PRKAPVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG

A0A6J1IVM3 uncharacterized protein LOC1114788091.8e-7580.77Show/hide
Query:  MEAISLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPPETVEVRFRKRSRRRSKQEREDGGATGNGR
        ME+ SLH+FLAS+PPLLTI P KF P S NQ+ F SLRHQ+ LRIKPINA  TDTDGD+  PQVPP ITPPETV+VRFRKRSRRRSKQE EDG A GN R
Subjt:  MEAISLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPPETVEVRFRKRSRRRSKQEREDGGATGNGR

Query:  PRKAPVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG
         RKAPVEI S KPKKWE+M + EKA ELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPT++FKG
Subjt:  PRKAPVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G17972.1 unknown protein1.0e-3045.81Show/hide
Query:  SLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPP-ETVEVRFRKRSRRRSKQEREDGGATGNGRPRK
        SLH FLA    ++ +  Q     S+ +  F   R  R  R   IN  ++  D +         IT P + VE+RF++ SRR+    RE+G   G G+  K
Subjt:  SLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPP-ETVEVRFRKRSRRRSKQEREDGGATGNGRPRK

Query:  APVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG
            +     K WE+M++ EKA+ELY+GEKGLLFWLNK AYASI+I+IGGWI FRFVGP+ NLYQLDTPPL P  + KG
Subjt:  APVEIGSDKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCAATCAGTCTCCACCAGTTTCTCGCTTCTAAACCACCGCTCTTAACCATCAATCCACAAAAATTCCCCCCTATTTCTCACAATCAAATCTTATTTCCATCTCT
ACGCCATCAACGGCTTCTCAGGATCAAACCGATCAACGCCACCGACACCGACACCGACGGCGACACCACACGACCGCAGGTTCCGCCGGCAATAACGCCTCCGGAGACAG
TGGAAGTTCGGTTCCGGAAGAGATCGAGAAGACGATCAAAACAGGAGAGGGAGGACGGAGGGGCGACGGGGAATGGGCGGCCGAGGAAGGCGCCGGTGGAGATTGGTTCC
GATAAGCCGAAGAAATGGGAAGACATGAGCGTGGGGGAGAAGGCGATGGAACTGTATATGGGAGAGAAGGGACTGTTGTTTTGGCTCAACAAATTTGCTTATGCTTCAAT
TTTTATTATGATTGGTGGTTGGATTGTGTTTCGGTTTGTTGGGCCTTCGCTCAATCTTTACCAGTTGGATACTCCACCATTGTCTCCGACTGCTGTATTCAAGGGTTAA
mRNA sequenceShow/hide mRNA sequence
CTCAGCCAGAGAAACGGAAAGAAATGGATAAAGCCACTCCAGAAGCCGAAGGTGTTGAGTGAGAAGCAATGGAAGCAATCAGTCTCCACCAGTTTCTCGCTTCTAAACCA
CCGCTCTTAACCATCAATCCACAAAAATTCCCCCCTATTTCTCACAATCAAATCTTATTTCCATCTCTACGCCATCAACGGCTTCTCAGGATCAAACCGATCAACGCCAC
CGACACCGACACCGACGGCGACACCACACGACCGCAGGTTCCGCCGGCAATAACGCCTCCGGAGACAGTGGAAGTTCGGTTCCGGAAGAGATCGAGAAGACGATCAAAAC
AGGAGAGGGAGGACGGAGGGGCGACGGGGAATGGGCGGCCGAGGAAGGCGCCGGTGGAGATTGGTTCCGATAAGCCGAAGAAATGGGAAGACATGAGCGTGGGGGAGAAG
GCGATGGAACTGTATATGGGAGAGAAGGGACTGTTGTTTTGGCTCAACAAATTTGCTTATGCTTCAATTTTTATTATGATTGGTGGTTGGATTGTGTTTCGGTTTGTTGG
GCCTTCGCTCAATCTTTACCAGTTGGATACTCCACCATTGTCTCCGACTGCTGTATTCAAGGGTTAACGATCATCGGAACCATCTTTCTTTAGTTTCTATGTTTAATCCT
TTTTCATACACCATCTACCACGGCTGCTCAAGTATTATTCTATCGTTGTAAATTCTTGTGCTAGAGATTTTTTTAACTGATCCGTGTTATGGAGAATTTGGTGATTATGA
ATTGGGTTTCATTAGTTGCAAATTGAAGAAAAAAACAGGGTACTGAGAAAAAAGGGGAAAACTTTTGGTTTCTTAACTAACATTACTTATAATATTGGATAGCAAGGTTG
CAATCTCAAAATTAATTGGCAATGAGAGACCTTGTAAGTCATATCGACGCATAAGGTACAAATTCAATTTTATGAGTATCCCAAAGAGAAGAAGTATTTCTCATTTCTTG
ATTTTGCATGAAAAATTAGAAAATTTTTCACATGTGATTCATCTACAAAGATATGGGATGAACCAAATCAAGTAGCAAGTTACAAACAATACAAATAATGG
Protein sequenceShow/hide protein sequence
MEAISLHQFLASKPPLLTINPQKFPPISHNQILFPSLRHQRLLRIKPINATDTDTDGDTTRPQVPPAITPPETVEVRFRKRSRRRSKQEREDGGATGNGRPRKAPVEIGS
DKPKKWEDMSVGEKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTAVFKG