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Clc01G21540 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G21540
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCCHC-type domain-containing protein
Genome locationClcChr01:33084612..33084911
RNA-Seq ExpressionClc01G21540
SyntenyClc01G21540
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON92154.1 Zinc knuckle CX2CX4HX4C [Trema orientale]2.2e-1846.46Show/hide
Query:  MAEKLGNAIGEFVEVDCDESGNCWGFSSKIRVITDITKPLRRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCV-KMYEQSRNSSKKAQYG
        +A+ LGN  G FVEV+ D++G+C G    +RVI DI KPLRRG K+ I    +  WV  RY RLPD+C+ CG IGHT+ DC  ++ ++ R   ++  YG
Subjt:  MAEKLGNAIGEFVEVDCDESGNCWGFSSKIRVITDITKPLRRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCV-KMYEQSRNSSKKAQYG

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]9.6e-2252.04Show/hide
Query:  MAEKLGNAIGEFVEVDCDESGNCWGFSSKIRVITDITKPLRRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCVKMYEQSRNSSKKAQYG
        MA +LGNAIG F +V+ + +  CWG   ++RV  D+ KPL RGIK+N+DG M G W+PI+YERLPD+ Y+CG + H LKDC      S   SK  QYG
Subjt:  MAEKLGNAIGEFVEVDCDESGNCWGFSSKIRVITDITKPLRRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCVKMYEQSRNSSKKAQYG

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]6.2e-2961.62Show/hide
Query:  MAEKLGNAIGEFVEVDCDESGNCWGFSSKIRVITDITKPLRRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCVKMYEQSRNSSK-KAQYG
        MA +LGNAIG FV+VDC+E G  WG S +IRV+ DITKPLRRGIKINIDG M G W+PI+YERLPD+CY CG+IGH+  DC   Y  +++ S+  ++YG
Subjt:  MAEKLGNAIGEFVEVDCDESGNCWGFSSKIRVITDITKPLRRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCVKMYEQSRNSSK-KAQYG

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]4.8e-2151.02Show/hide
Query:  MAEKLGNAIGEFVEVDCDESGNCWGFSSKIRVITDITKPLRRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCVKMYEQSRNSSKKAQYG
        MA +LGNA+G F E DCD+    WG + ++RV+ DI+KPLRRGIK+N+DG + G W+PI+YERLPD+CY+CGL                +S KK QYG
Subjt:  MAEKLGNAIGEFVEVDCDESGNCWGFSSKIRVITDITKPLRRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCVKMYEQSRNSSKKAQYG

XP_038894015.1 uncharacterized protein LOC120082783 [Benincasa hispida]1.0e-1851.85Show/hide
Query:  MAEKLGNAIGEFVEVDCDESGNCWGFSSKIRVITDITKPLRRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDC
        MA  LGN+IG F+ VD DE+ NCW  S  IR+  DIT PL  G+K   + S +  W+ I+YER+PD+CY+C +IGH LK+C
Subjt:  MAEKLGNAIGEFVEVDCDESGNCWGFSSKIRVITDITKPLRRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDC

TrEMBL top hitse value%identityAlignment
A0A2P5F2Z2 Zinc knuckle CX2CX4HX4C1.1e-1846.46Show/hide
Query:  MAEKLGNAIGEFVEVDCDESGNCWGFSSKIRVITDITKPLRRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCV-KMYEQSRNSSKKAQYG
        +A+ LGN  G FVEV+ D++G+C G    +RVI DI KPLRRG K+ I    +  WV  RY RLPD+C+ CG IGHT+ DC  ++ ++ R   ++  YG
Subjt:  MAEKLGNAIGEFVEVDCDESGNCWGFSSKIRVITDITKPLRRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCV-KMYEQSRNSSKKAQYG

A0A6J1BSZ1 uncharacterized protein LOC1110054814.7e-2252.04Show/hide
Query:  MAEKLGNAIGEFVEVDCDESGNCWGFSSKIRVITDITKPLRRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCVKMYEQSRNSSKKAQYG
        MA +LGNAIG F +V+ + +  CWG   ++RV  D+ KPL RGIK+N+DG M G W+PI+YERLPD+ Y+CG + H LKDC      S   SK  QYG
Subjt:  MAEKLGNAIGEFVEVDCDESGNCWGFSSKIRVITDITKPLRRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCVKMYEQSRNSSKKAQYG

A0A6J1DU55 uncharacterized protein LOC1110231353.0e-2961.62Show/hide
Query:  MAEKLGNAIGEFVEVDCDESGNCWGFSSKIRVITDITKPLRRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCVKMYEQSRNSSK-KAQYG
        MA +LGNAIG FV+VDC+E G  WG S +IRV+ DITKPLRRGIKINIDG M G W+PI+YERLPD+CY CG+IGH+  DC   Y  +++ S+  ++YG
Subjt:  MAEKLGNAIGEFVEVDCDESGNCWGFSSKIRVITDITKPLRRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCVKMYEQSRNSSK-KAQYG

A0A6J1DX30 uncharacterized protein LOC1110248742.3e-2151.02Show/hide
Query:  MAEKLGNAIGEFVEVDCDESGNCWGFSSKIRVITDITKPLRRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCVKMYEQSRNSSKKAQYG
        MA +LGNA+G F E DCD+    WG + ++RV+ DI+KPLRRGIK+N+DG + G W+PI+YERLPD+CY+CGL                +S KK QYG
Subjt:  MAEKLGNAIGEFVEVDCDESGNCWGFSSKIRVITDITKPLRRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCVKMYEQSRNSSKKAQYG

A0A803QHU2 Uncharacterized protein4.5e-1744.44Show/hide
Query:  MAEKLGNAIGEFVEVDCDESGNCWGFSSKIRVITDITKPLRRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCVKMYEQ-SRNSSKKAQYG
        +AE LGN IGEF+EV  D +   WG   +IRV   +TKPL RG  I +    + +WV  RYERLP++C+ CG +GH  K C+   E+  R +    QYG
Subjt:  MAEKLGNAIGEFVEVDCDESGNCWGFSSKIRVITDITKPLRRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCVKMYEQ-SRNSSKKAQYG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G67210.1 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein1.9e-0427.78Show/hide
Query:  SSKIRVITDITKPL-RRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCVKMYEQSRNSSKKAQY
        S K   +   T PL  RG  I +D   N     +     P  C+NCG   H++++C + +++S  S+ + Q+
Subjt:  SSKIRVITDITKPL-RRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCVKMYEQSRNSSKKAQY

AT1G67210.2 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein1.9e-0427.78Show/hide
Query:  SSKIRVITDITKPL-RRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCVKMYEQSRNSSKKAQY
        S K   +   T PL  RG  I +D   N     +     P  C+NCG   H++++C + +++S  S+ + Q+
Subjt:  SSKIRVITDITKPL-RRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCVKMYEQSRNSSKKAQY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAGAAACTTGGGAATGCTATAGGAGAATTTGTAGAGGTTGATTGTGATGAATCAGGGAACTGCTGGGGATTTAGTTCGAAAATTCGTGTGATTACCGACATAAC
AAAACCTTTAAGAAGAGGGATTAAGATAAATATTGATGGTTCTATGAATGGCTATTGGGTTCCAATAAGGTATGAAAGATTACCAGACTATTGTTACAATTGTGGTTTAA
TTGGGCATACGCTTAAAGATTGTGTTAAGATGTATGAACAATCGAGAAATTCTAGCAAGAAAGCTCAGTACGGATATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAGAAACTTGGGAATGCTATAGGAGAATTTGTAGAGGTTGATTGTGATGAATCAGGGAACTGCTGGGGATTTAGTTCGAAAATTCGTGTGATTACCGACATAAC
AAAACCTTTAAGAAGAGGGATTAAGATAAATATTGATGGTTCTATGAATGGCTATTGGGTTCCAATAAGGTATGAAAGATTACCAGACTATTGTTACAATTGTGGTTTAA
TTGGGCATACGCTTAAAGATTGTGTTAAGATGTATGAACAATCGAGAAATTCTAGCAAGAAAGCTCAGTACGGATATTGA
Protein sequenceShow/hide protein sequence
MAEKLGNAIGEFVEVDCDESGNCWGFSSKIRVITDITKPLRRGIKINIDGSMNGYWVPIRYERLPDYCYNCGLIGHTLKDCVKMYEQSRNSSKKAQYGY