CuGenDBv2

Gene ID	Clc01G22170
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	chaperonin-like RBCX protein 1, chloroplastic
Genome location	ClcChr01:33437307..33439215
RNA-Seq Expression	Clc01G22170
Synteny	Clc01G22170
Gene Ontology terms	GO:0006270 - DNA replication initiation (biological process) GO:0009409 - response to cold (biological process) GO:0009414 - response to water deprivation (biological process) GO:0009651 - response to salt stress (biological process) GO:0015977 - carbon fixation (biological process) GO:0015979 - photosynthesis (biological process) GO:0033314 - mitotic DNA replication checkpoint (biological process) GO:0061077 - chaperone-mediated protein folding (biological process) GO:0110102 - chloroplast ribulose bisphosphate carboxylase complex assembly (biological process) GO:0005664 - nuclear origin of replication recognition complex (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0003688 - DNA replication origin binding (molecular function) GO:0044183 - protein folding chaperone (molecular function)
InterPro domains	IPR003435 - Chaperonin-like RbcX IPR038052 - Chaperonin-like RbcX superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7026647.1 Chaperonin-like RBCX protein 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

1.1e-77

80.69

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Query:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQ-LLCFNCSAILCG
        MES ARILS + FPS+FP PNLNR N  PVWPKK    KS+RLHC       FGEASPE+KAA+NLHNFFTYVAVRIVTAQLEV LQ LLCFNCSA+L  
Subjt:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQ-LLCFNCSAILCG

Query:  FSLVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDT
          LVLILVLVEQSYNPEA+ ELMEFLD+HSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KMV ESNTRLMREYVTETSP D 
Subjt:  FSLVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDT

Query:  EK
        EK
Subjt:  EK

XP_004134778.1 chaperonin-like RBCX protein 1, chloroplastic [Cucumis sativus]

7.4e-74

76.62

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Query:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF
        MESSARILS +QFPS+F LPNLNRGNVFPV P KPR FK MRLHC       FGEASPESKAARNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF

Query:  SLVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
                   SYNPEAYLELMEFLD+HSLNDGDKFLASLMRESSRHK+LALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTR+MREY+TETSPSDTE
Subjt:  SLVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

XP_008440039.1 PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo]

1.3e-73

77.11

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Query:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF
        MESSARILS +QFPSIF LPNLNRGNVFPV P KPR  KSMRLHC       FGEASPESKAARNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF

Query:  SLVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
                   SYNPEAYLELMEFLD+HSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTE
Subjt:  SLVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

XP_022132911.1 chaperonin-like RBCX protein 1, chloroplastic [Momordica charantia]

2.3e-67

69.95

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Query:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRV--FKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILC
        MESSAR+LS +QFPS+FPLPNLNR  VFP+WP KP+   F  ++L C       FGEASPE+KAA+NLHNFFTYVAVRIV AQLE               
Subjt:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRV--FKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILC

Query:  GFSLVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSD
                     SYNPEA++ELMEFLD+HSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KM SESNTRLMREYVTETSPS+
Subjt:  GFSLVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSD

Query:  TEK
        TEK
Subjt:  TEK

XP_038881664.1 chaperonin-like RBCX protein 1, chloroplastic isoform X1 [Benincasa hispida]

3.5e-76

78.11

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Query:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF
        ME SARILSS+QFPS+FPLPNLNR NVFPVWPKKP+  KSMRLHC       FGEASPESKAARNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF

Query:  SLVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
                   SYNPEAY ELMEFLD+HSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
Subjt:  SLVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KMZ4 Uncharacterized protein

3.6e-74

76.62

Show/hide

Query:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF
        MESSARILS +QFPS+F LPNLNRGNVFPV P KPR FK MRLHC       FGEASPESKAARNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF

Query:  SLVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
                   SYNPEAYLELMEFLD+HSLNDGDKFLASLMRESSRHK+LALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTR+MREY+TETSPSDTE
Subjt:  SLVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

A0A1S3B054 uncharacterized protein LOC103484635

6.1e-74

77.11

Show/hide

Query:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF
        MESSARILS +QFPSIF LPNLNRGNVFPV P KPR  KSMRLHC       FGEASPESKAARNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF

Query:  SLVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
                   SYNPEAYLELMEFLD+HSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTE
Subjt:  SLVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

A0A5D3CNU4 Chaperonin-like RBCX protein 1

6.1e-74

77.11

Show/hide

Query:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF
        MESSARILS +QFPSIF LPNLNRGNVFPV P KPR  KSMRLHC       FGEASPESKAARNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF

Query:  SLVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
                   SYNPEAYLELMEFLD+HSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTE
Subjt:  SLVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

A0A6J1BTL5 chaperonin-like RBCX protein 1, chloroplastic

1.1e-67

69.95

Show/hide

Query:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRV--FKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILC
        MESSAR+LS +QFPS+FPLPNLNR  VFP+WP KP+   F  ++L C       FGEASPE+KAA+NLHNFFTYVAVRIV AQLE               
Subjt:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRV--FKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILC

Query:  GFSLVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSD
                     SYNPEA++ELMEFLD+HSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KM SESNTRLMREYVTETSPS+
Subjt:  GFSLVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSD

Query:  TEK
        TEK
Subjt:  TEK

A0A6J1KRH1 chaperonin-like RBCX protein 1, chloroplastic

1.4e-67

71.14

Show/hide

Query:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF
        MES ARILS + FPS+FPLPNLNR N  PVWPKKP   KS+RLHC       FGEASPE+KAA+NLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF

Query:  SLVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
                   SYNPEA+ ELMEFLD+HSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KMV ESNTRLMREYVTETSP D E
Subjt:  SLVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

SwissProt top hits

e value

%identity

Alignment

Q94AU9 Chaperonin-like RBCX protein 1, chloroplastic

2.8e-44

52.76

Show/hide

Query:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWP-----KKPRVFKSMRLHCRFGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFS
        MESS+ +L  S    + P         +P+       K+ R+  +      FGEASPE+KAA++LH+FFTYVAVRIV+AQLE                  
Subjt:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWP-----KKPRVFKSMRLHCRFGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFS

Query:  LVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
                  SYNPEAY+EL EFLD +S++DGDKF A+LMR SSRH +LALRILEVRSAYCKNDFEWDN+KRLAFK V +SNTRLMREYV ETS  +T+
Subjt:  LVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE

Arabidopsis top hits

e value

%identity

Alignment

AT4G04330.1 Chaperonin-like RbcX protein

2.0e-45

52.76

Show/hide

Query:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWP-----KKPRVFKSMRLHCRFGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFS
        MESS+ +L  S    + P         +P+       K+ R+  +      FGEASPE+KAA++LH+FFTYVAVRIV+AQLE                  
Subjt:  MESSARILSSSQFPSIFPLPNLNRGNVFPVWP-----KKPRVFKSMRLHCRFGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFS

Query:  LVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
                  SYNPEAY+EL EFLD +S++DGDKF A+LMR SSRH +LALRILEVRSAYCKNDFEWDN+KRLAFK V +SNTRLMREYV ETS  +T+
Subjt:  LVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE

Sequences

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CDS sequence

Show/hide CDS sequence

mRNA sequence

Show/hide mRNA sequence

ATGGAATCATCTGCAAGGATTCTTTCCTCTTCTCAGTTCCCTTCCATTTTCCCACTACCCAATTTAAACAGAGGCAATGTTTTTCCAGTTTGGCCAAAAAAGCCAAGAGT
TTTCAAGTCTATGCGCTTGCATTGCAGGTTTGGAGAAGCTTCACCAGAATCAAAGGCAGCCAGAAATCTGCATAATTTCTTCACATATGTTGCTGTTAGGATAGTGACTG
CCCAGCTTGAGGTTACTCTTCAGTTGCTTTGTTTTAATTGCTCGGCCATATTGTGTGGGTTTTCGTTGGTATTGATTCTTGTTCTGGTAGAGCAGAGCTATAATCCAGAG
GCGTACCTGGAGTTAATGGAGTTTCTTGATAAACATTCACTGAATGATGGGGACAAATTCTTGGCCAGTTTGATGCGAGAGTCGTCAAGGCATAAATCTCTTGCATTGCG
CATACTAGAGGTTCGATCTGCATACTGCAAAAACGATTTTGAGTGGGACAACCTCAAGCGATTAGCTTTCAAAATGGTTAGTGAATCCAACACGAGACTGATGAGGGAAT
ACGTAACAGAGACAAGTCCATCGGATACCGAGAAGTGATGAAATTCTGCATTGTCTTCACTTTTTGCAGTTAAACAGGAGAGGATACATAAATTCAGTGTGTATGATATG
AGATAAGTAACAACGAAGTAGCAAACCCAGTGCCATATACGGAGACATTCATTCTGAATTCTTCTTGCGTGCTACAAAATAATATTCATCGTAATTTAAATTACTCAAAT
GTTTCACCCGTTGCTGAAGATTAACAATGCCCCACCTAAAGTTCAGAAATTTGTTAATCAGCTCCAGTCTGAAACAGGGTCTTGTGGTTTTCTTAAAAGAAATCAGAGGA
AGCAATAAGGTTCAGGGATGTGTAAGAACCAAAATATGGGATGAATGAGAATGCAAGGCATTTCAGACCAAGACCTGAATGGGGCAGAGAGACAATCAATGAATTCAGAA
ATGCTTTGGCTCACAGCAGAAGCTAACGCAAAAGACTTTTTGCAAACTTAACTTGGGAAATAATTAGCATGATTAAAAGTGATTGTTGGGGAATCAGTGGCTGGCTAACG
TATAGTTGGATCTTCATATATAGATAAGCTCGGAAGAACAAAAGACTATATCCTTCCATCTCCCATTGCCCCAATTTCTTTTGTCTAATTAAGGCGAGGTTTTTATAGTT
GTAAATCATCCATCACATCAACATATCACCAAATCATCACATCAAAACAGAAGAATTTTGATATGTAAAAGAGAGATTTGCAAAACTTGACAGTCTGCCAGTAAGCATGG
TTCTTTTTGTTATTTTCGAAC

Protein sequence

Show/hide protein sequence

MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCRFGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFSLVLILVLVEQSYNPE
AYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK

Clc01G22170 (gene) of Watermelon (cordophanus) v2 genome