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Clc01G22960 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G22960
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionB-box type zinc finger family protein
Genome locationClcChr01:33897869..33898805
RNA-Seq ExpressionClc01G22960
SyntenyClc01G22960
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000315 - B-box-type zinc finger


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603735.1 B-box domain protein 31, partial [Cucurbita argyrosperma subsp. sororia]6.2e-5078.4Show/hide
Query:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRGSEEGCGSEEGCG
        MKKLCELC+CVATV+CESD ARLCWGCDSKVHGANFLVGKHLR LLCHDCQAPTPWNG+GP+LVATVAFC++CVEKNRRNGKT   RG     G EEG G
Subjt:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRGSEEGCGSEEGCG

Query:  SSN----GATDEDDDMENQVVPWLS
        SSN    G +D DD+ ENQVVPWLS
Subjt:  SSN----GATDEDDDMENQVVPWLS

TYK13089.1 putative zinc finger protein [Cucumis melo var. makuwa]2.3e-4470Show/hide
Query:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRGSEEGCGSEEGCG
        MKKLCELC CVATVMCE+DAA LCWGCDSKVHGANFLVGKHLR LLCHDCQAPTPWNG+GP LVATVAFC NCV K R N      R  E+ CGS  G  
Subjt:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRGSEEGCGSEEGCG

Query:  SSNGATDEDDD-----MENQVVPWLSSCPN
        + +G  D+DDD     +ENQVVPWLS  P+
Subjt:  SSNGATDEDDD-----MENQVVPWLSSCPN

XP_022950367.1 putative zinc finger protein At1g68190 [Cucurbita moschata]7.3e-5180Show/hide
Query:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRGSEEGCGSEEGCG
        MKKLCELC+CVATV+CESD ARLCWGCDSKVHGANFLVGKHLR LLCHDCQAPTPWNG+GPKLVATVAFC+NCVEKNRRNGKT   RG     G EEG G
Subjt:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRGSEEGCGSEEGCG

Query:  SSN----GATDEDDDMENQVVPWLS
        SSN    G +D DD+ ENQVVPWLS
Subjt:  SSN----GATDEDDDMENQVVPWLS

XP_022977340.1 zinc finger protein CONSTANS-LIKE 13-like [Cucurbita maxima]3.1e-4977.6Show/hide
Query:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRGSEEGCGSEEGCG
        MKKLCELC+CVATV+CESD ARLCWGCDSKVHGANFLVGKH R LLCHDCQAPTPWNG+GP+LVATVAFC+NCVEKNRRNGKT   RG     G EEG G
Subjt:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRGSEEGCGSEEGCG

Query:  SSN----GATDEDDDMENQVVPWLS
        SSN    G +D DD+ E+QVVPWLS
Subjt:  SSN----GATDEDDDMENQVVPWLS

XP_023544021.1 zinc finger protein CONSTANS-LIKE 13-like [Cucurbita pepo subsp. pepo]5.2e-4977.6Show/hide
Query:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRGSEEGCGSEEGCG
        MKKLCELC+CVATV+CESD ARLCWGCDSKVHGANFLVGKHLR LLCHDCQAPTPWNG+GP+LVATVAFC+NCVEKNRR+GKT   R      G EEG G
Subjt:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRGSEEGCGSEEGCG

Query:  SSN----GATDEDDDMENQVVPWLS
        SSN    G +D DD+ ENQVVPWLS
Subjt:  SSN----GATDEDDDMENQVVPWLS

TrEMBL top hitse value%identityAlignment
A0A0A0KHH6 B box-type domain-containing protein1.4e-4773.23Show/hide
Query:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRGSEEGCGSEEGCG
        MKKLCELC CVATVMCESDAA LCWGCDSKVHGANF+VGKHLR LLCHDCQAPTPWNG+GP LVATVAFC NCV KNRRN      R  E+ CGS +G G
Subjt:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRGSEEGCGSEEGCG

Query:  SS--NGATDEDDDMENQVVPWLSSCPN
        ++  +G  D+DD++ENQVVPWLS  P+
Subjt:  SS--NGATDEDDDMENQVVPWLSSCPN

A0A5A7UBH5 Putative zinc finger protein1.4e-4468.7Show/hide
Query:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRGSEEGCGSEE---
        MKKLCELC CVATVMCE+DAA LCWGCDSKVHGANFLVGKHLR LLCHDCQAPTPWNG+GP LVATVAFC NCV K R N      R  E+ CGS     
Subjt:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRGSEEGCGSEE---

Query:  ---GCGSSNGATDEDDDMENQVVPWLSSCPN
           GC   +   D+DD++ENQVVPWLS  P+
Subjt:  ---GCGSSNGATDEDDDMENQVVPWLSSCPN

A0A5D3CS61 Putative zinc finger protein1.1e-4470Show/hide
Query:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRGSEEGCGSEEGCG
        MKKLCELC CVATVMCE+DAA LCWGCDSKVHGANFLVGKHLR LLCHDCQAPTPWNG+GP LVATVAFC NCV K R N      R  E+ CGS  G  
Subjt:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRGSEEGCGSEEGCG

Query:  SSNGATDEDDD-----MENQVVPWLSSCPN
        + +G  D+DDD     +ENQVVPWLS  P+
Subjt:  SSNGATDEDDD-----MENQVVPWLSSCPN

A0A6J1GEL4 putative zinc finger protein At1g681903.5e-5180Show/hide
Query:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRGSEEGCGSEEGCG
        MKKLCELC+CVATV+CESD ARLCWGCDSKVHGANFLVGKHLR LLCHDCQAPTPWNG+GPKLVATVAFC+NCVEKNRRNGKT   RG     G EEG G
Subjt:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRGSEEGCGSEEGCG

Query:  SSN----GATDEDDDMENQVVPWLS
        SSN    G +D DD+ ENQVVPWLS
Subjt:  SSN----GATDEDDDMENQVVPWLS

A0A6J1IM17 zinc finger protein CONSTANS-LIKE 13-like1.5e-4977.6Show/hide
Query:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRGSEEGCGSEEGCG
        MKKLCELC+CVATV+CESD ARLCWGCDSKVHGANFLVGKH R LLCHDCQAPTPWNG+GP+LVATVAFC+NCVEKNRRNGKT   RG     G EEG G
Subjt:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRGSEEGCGSEEGCG

Query:  SSN----GATDEDDDMENQVVPWLS
        SSN    G +D DD+ E+QVVPWLS
Subjt:  SSN----GATDEDDDMENQVVPWLS

SwissProt top hitse value%identityAlignment
Q1G3I2 B-box domain protein 302.7e-0856Show/hide
Query:  CELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPT
        CELC   ATV CE+DAA LC  CD  VH ANFL  +HLR ++C  C+  T
Subjt:  CELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPT

Q9C9F4 Putative zinc finger protein At1g681902.1e-0850Show/hide
Query:  MKKLCELCECV-ATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQ
        M+++CE C+   A V C +D A LC  CD+KVH AN L G+HLR +LC  C+
Subjt:  MKKLCELCECV-ATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQ

Q9LJB7 B-box zinc finger protein 322.1e-0841.27Show/hide
Query:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKL
        M   CELC   A + C +D+A LC  CD+K H +NFL  +H R ++C +C++ T    +GP L
Subjt:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKL

Q9LRM4 B-box domain protein 312.5e-0956Show/hide
Query:  CELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPT
        CELC+  A+V CE+D+A LC  CD  VHGANFL  +H+R +LC  CQ  T
Subjt:  CELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPT

Q9SYM2 B-box zinc finger protein 222.6e-0632.62Show/hide
Query:  MKKLCELCECV-ATVMCESDAARLCWGCDSKVHGANFLVGKHLRALL---------CHDCQAPTPWNGTGPKLVATVAFCENC------VEKNRRNGKTT
        MK  C +CE   ATV+C +D A LCW CD K+H AN L GKH R  L         C  CQ     +G    L      C  C      V  +    +  
Subjt:  MKKLCELCECV-ATVMCESDAARLCWGCDSKVHGANFLVGKHLRALL---------CHDCQAPTPWNGTGPKLVATVAFCENC------VEKNRRNGKTT

Query:  LSRGSEEGCGS-EEGCGSSNGATDEDDDMENQVVPWLSSCP
        L  G + G  S + G  + +  T++D  ME +  P++ S P
Subjt:  LSRGSEEGCGS-EEGCGSSNGATDEDDDMENQVVPWLSSCP

Arabidopsis top hitse value%identityAlignment
AT1G68190.1 B-box zinc finger family protein1.5e-0950Show/hide
Query:  MKKLCELCECV-ATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQ
        M+++CE C+   A V C +D A LC  CD+KVH AN L G+HLR +LC  C+
Subjt:  MKKLCELCECV-ATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQ

AT3G21150.1 B-box 321.5e-0941.27Show/hide
Query:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKL
        M   CELC   A + C +D+A LC  CD+K H +NFL  +H R ++C +C++ T    +GP L
Subjt:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKL

AT3G21890.1 B-box type zinc finger family protein1.8e-1056Show/hide
Query:  CELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPT
        CELC+  A+V CE+D+A LC  CD  VHGANFL  +H+R +LC  CQ  T
Subjt:  CELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPT

AT4G27310.1 B-box type zinc finger family protein4.0e-2344.23Show/hide
Query:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVE-KN----RRNGKTTLSRGSEEGCGS
        M K C+LC  VA + CESD A LCW CD KVHGANFLV KH R LLC  CQ+ TPW  TG +L  T + CE+CV  KN    R N   + +RG EE    
Subjt:  MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVE-KN----RRNGKTTLSRGSEEGCGS

Query:  E-------EGCGSSNGA------------------TDEDDD-------MENQVVPW
        E       E  G  + A                   DEDDD        ENQVVPW
Subjt:  E-------EGCGSSNGA------------------TDEDDD-------MENQVVPW

AT5G54470.1 B-box type zinc finger family protein3.5e-2748.8Show/hide
Query:  KKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRG-----SEEGCGSE
        KK CELC  VA + CESD A LCW CD KVHGANFLV KH+R LLC  CQ+ TPW  +G  L  TV+ CE+C+ + + N  +   R       EE  G  
Subjt:  KKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRG-----SEEGCGSE

Query:  EGCGSSNGATDED---DDMENQVVP
        +G  S +  +DED   +++ENQVVP
Subjt:  EGCGSSNGATDED---DDMENQVVP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAATTGTGCGAGCTGTGCGAGTGTGTGGCTACGGTGATGTGCGAATCGGACGCAGCCAGGTTGTGTTGGGGGTGCGATTCCAAGGTCCATGGCGCTAATTTTCT
AGTGGGGAAGCATTTGAGGGCTTTGCTGTGCCATGATTGCCAAGCCCCCACGCCTTGGAATGGGACTGGGCCGAAGCTCGTGGCTACGGTTGCGTTTTGCGAGAACTGTG
TCGAGAAAAATAGGCGAAATGGGAAGACGACGCTGAGCAGAGGGAGTGAGGAAGGGTGTGGGAGCGAGGAAGGGTGTGGGAGCTCTAATGGCGCCACTGATGAAGATGAT
GATATGGAAAATCAAGTGGTTCCTTGGTTATCCTCCTGCCCTAATTGA
mRNA sequenceShow/hide mRNA sequence
AAAGAAAAAAACCCAGAAATGTTCGCCCACAGGAATGGGATTCATTGATTGTAGCCACAAAATTATCTAAAACACCCACTTGCCCCAAAAATGACCATAACAAGCACCGT
ACACTAAACCAAAAAAGACAGAAAACAAAATCCCCATTACCCCCTTTCCATGATATTTCTTCGTCCAAATACAGAGAAAAAATAGGAACCCAAGTCCCAACTTGATTCCC
TTACATCTCTGCATAATATGGGCCACCCTTCATTGCTTTGCTTCTCTCTGTTTGTATAAATAAATAAGTGATGAGAGTGAGGGGTAACTAAAATGAAGAAATTGTGCGAG
CTGTGCGAGTGTGTGGCTACGGTGATGTGCGAATCGGACGCAGCCAGGTTGTGTTGGGGGTGCGATTCCAAGGTCCATGGCGCTAATTTTCTAGTGGGGAAGCATTTGAG
GGCTTTGCTGTGCCATGATTGCCAAGCCCCCACGCCTTGGAATGGGACTGGGCCGAAGCTCGTGGCTACGGTTGCGTTTTGCGAGAACTGTGTCGAGAAAAATAGGCGAA
ATGGGAAGACGACGCTGAGCAGAGGGAGTGAGGAAGGGTGTGGGAGCGAGGAAGGGTGTGGGAGCTCTAATGGCGCCACTGATGAAGATGATGATATGGAAAATCAAGTG
GTTCCTTGGTTATCCTCCTGCCCTAATTGAAAATGGAAAATCCTTCACTATAATTTAAATCCCCCATGTAAATTCATAATTATTTTAATATACTTTTTTATGTCTAATGA
TGTAAATTATTTAGTATTGTGTATTGAGTACAATTGAACGAATGTAATATGCAAATTTTTTTAACTTTACATGTCAATTACCTGTTCATTGATTTTATTATTATTGTTGG
GATTTTGTGTATTGATTCAAATTTTTACCTTATCTAGAGGTCGTTATGTATATACAT
Protein sequenceShow/hide protein sequence
MKKLCELCECVATVMCESDAARLCWGCDSKVHGANFLVGKHLRALLCHDCQAPTPWNGTGPKLVATVAFCENCVEKNRRNGKTTLSRGSEEGCGSEEGCGSSNGATDEDD
DMENQVVPWLSSCPN