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Clc01G23080 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G23080
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCHCH domain-containing protein
Genome locationClcChr01:33957407..33957930
RNA-Seq ExpressionClc01G23080
SyntenyClc01G23080
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134733.1 uncharacterized protein LOC101211873 [Cucumis sativus]6.5e-5983.11Show/hide
Query:  MISLKPSTHHNG--SSFPYNYSLNLQQNPIPIIRI-KPNFTPEFHSRTTFRTRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLL
        MISLKPSTHHNG  +SFPYN S   QQNPIPIIRI KPNF+   H++TTFRT A+  GSG G ++RTFLTIEEAGLVEVSGL THERFLCRLTISSLNLL
Subjt:  MISLKPSTHHNG--SSFPYNYSLNLQQNPIPIIRI-KPNFTPEFHSRTTFRTRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLL

Query:  RVIAEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF
        +VIAEEE+CSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF
Subjt:  RVIAEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF

XP_022949732.1 uncharacterized protein LOC111453037 [Cucurbita moschata]3.6e-5781.38Show/hide
Query:  MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVI
        MISLKPS HHNGSSF  N S NL Q   PI R + NF P   ++TTFR RAEQ  SGNGA+RRTFLT+EEAGLVEVSGL THERFLCRLTISSLNLL+VI
Subjt:  MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVI

Query:  AEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF
        AEEE+CSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF
Subjt:  AEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF

XP_022977984.1 uncharacterized protein LOC111478111 [Cucurbita maxima]2.5e-5882.07Show/hide
Query:  MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVI
        MISLKPS HHNGSSF  N S NL Q   PI R++ NF P F ++TTFR RAEQ  SGNGA+RRTFLT+EEAGLVEVSGL THERFLCRLTISSLNLL+VI
Subjt:  MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVI

Query:  AEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF
        AEEE+CSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF
Subjt:  AEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF

XP_023544671.1 uncharacterized protein LOC111804184 [Cucurbita pepo subsp. pepo]4.2e-5881.38Show/hide
Query:  MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVI
        MISLKPS HHNGSSF +N S NL Q   PI R + NF P F ++TTF+ RAEQ  SGNGA+RRTFLT+EEAGLVEVSGL THERFLCRLTISSLNLL+VI
Subjt:  MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVI

Query:  AEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF
        AEEE+CSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF
Subjt:  AEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF

XP_038881387.1 uncharacterized protein LOC120072922 [Benincasa hispida]2.8e-6288.51Show/hide
Query:  MISLKPSTHHNGSSFPYNYSLNLQQNPIP-IIRIKPNFTPEFHSR-TTFRTRAEQPG-SGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLL
        MISL PSTHHNGSSF YN S NLQQN IP IIRIKPNF P FH++ TTFRT+AEQ G SGNGA+RRTFLTIEEAGLVEVSGL THERFLCRLTISSLNLL
Subjt:  MISLKPSTHHNGSSFPYNYSLNLQQNPIP-IIRIKPNFTPEFHSR-TTFRTRAEQPG-SGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLL

Query:  RVIAEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF
        RVIAEEE+CSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF
Subjt:  RVIAEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF

TrEMBL top hitse value%identityAlignment
A0A0A0KHI4 Uncharacterized protein3.1e-5983.11Show/hide
Query:  MISLKPSTHHNG--SSFPYNYSLNLQQNPIPIIRI-KPNFTPEFHSRTTFRTRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLL
        MISLKPSTHHNG  +SFPYN S   QQNPIPIIRI KPNF+   H++TTFRT A+  GSG G ++RTFLTIEEAGLVEVSGL THERFLCRLTISSLNLL
Subjt:  MISLKPSTHHNG--SSFPYNYSLNLQQNPIPIIRI-KPNFTPEFHSRTTFRTRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLL

Query:  RVIAEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF
        +VIAEEE+CSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF
Subjt:  RVIAEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF

A0A6J1CKG5 uncharacterized protein LOC1110124322.6e-4571.81Show/hide
Query:  MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPE-FHSRTTFR---TRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNL
        MISL P  + NGSSFP+  S  L   PIP     P  T      +  FR    RAEQ G GN A+RRTFLT+EEAGLVEVSGL THERFLCRLTISSLNL
Subjt:  MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPE-FHSRTTFR---TRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNL

Query:  LRVIAEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF
        LRVIAEEE+CSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSD  F
Subjt:  LRVIAEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF

A0A6J1GCY7 uncharacterized protein LOC1114530371.7e-5781.38Show/hide
Query:  MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVI
        MISLKPS HHNGSSF  N S NL Q   PI R + NF P   ++TTFR RAEQ  SGNGA+RRTFLT+EEAGLVEVSGL THERFLCRLTISSLNLL+VI
Subjt:  MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVI

Query:  AEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF
        AEEE+CSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF
Subjt:  AEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF

A0A6J1ISV2 uncharacterized protein LOC1114781111.2e-5882.07Show/hide
Query:  MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVI
        MISLKPS HHNGSSF  N S NL Q   PI R++ NF P F ++TTFR RAEQ  SGNGA+RRTFLT+EEAGLVEVSGL THERFLCRLTISSLNLL+VI
Subjt:  MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVI

Query:  AEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF
        AEEE+CSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF
Subjt:  AEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF

A0A6P4A1U2 uncharacterized protein LOC1074220011.2e-3761.18Show/hide
Query:  MISLKP-STHHNGSSF--PYNYSLNLQQNPIPIIRIKP-NFTPEFHSRTTFRTRAEQPGSG---NGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISS
        M+SLKP  THH  SS   P+N    ++Q      +I+P    P      + R  + Q   G     ++RRTFLT+EEAGLVE+SGLGTHERFLCRLTISS
Subjt:  MISLKP-STHHNGSSF--PYNYSLNLQQNPIPIIRIKP-NFTPEFHSRTTFRTRAEQPGSG---NGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISS

Query:  LNLLRVIAEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF
        LNLLRVIAE+E CSIEELNAGR+CDWF+KDKLKREQN+DSAVLQWDDS+  F
Subjt:  LNLLRVIAEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G21445.1 unknown protein4.8e-3670.71Show/hide
Query:  RTTFRTRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSD
        R +  T  E+    N  ERR+FL++ EAGLVE+SGLG HE+FLCRLTISSLNLLRVI+E+E CSIEELNAG++CDWFLKDKLKRE N++SAVLQWDD D
Subjt:  RTTFRTRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTCACTCAAACCCTCCACTCACCACAATGGATCCTCATTCCCTTACAATTATTCTTTAAATCTTCAACAGAATCCCATTCCAATCATTAGAATTAAGCCCAATTT
CACACCTGAATTCCACAGCAGAACAACCTTCAGAACCCGCGCCGAACAACCCGGATCAGGCAACGGCGCTGAAAGACGGACTTTCTTGACCATCGAAGAAGCCGGTCTGG
TTGAAGTATCCGGCCTCGGCACGCACGAACGATTTCTCTGTCGTTTAACCATATCGTCCCTGAATTTACTGAGAGTGATAGCGGAGGAAGAGGAATGTTCCATTGAAGAG
TTGAATGCGGGAAGATTATGCGATTGGTTTCTCAAGGATAAGTTGAAAAGAGAGCAGAATTTGGATTCTGCTGTTCTTCAATGGGACGATTCTGACCCTCTCTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCTCACTCAAACCCTCCACTCACCACAATGGATCCTCATTCCCTTACAATTATTCTTTAAATCTTCAACAGAATCCCATTCCAATCATTAGAATTAAGCCCAATTT
CACACCTGAATTCCACAGCAGAACAACCTTCAGAACCCGCGCCGAACAACCCGGATCAGGCAACGGCGCTGAAAGACGGACTTTCTTGACCATCGAAGAAGCCGGTCTGG
TTGAAGTATCCGGCCTCGGCACGCACGAACGATTTCTCTGTCGTTTAACCATATCGTCCCTGAATTTACTGAGAGTGATAGCGGAGGAAGAGGAATGTTCCATTGAAGAG
TTGAATGCGGGAAGATTATGCGATTGGTTTCTCAAGGATAAGTTGAAAAGAGAGCAGAATTTGGATTCTGCTGTTCTTCAATGGGACGATTCTGACCCTCTCTTCTGA
Protein sequenceShow/hide protein sequence
MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEE
LNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF