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Clc01G23095 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G23095
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLysM domain-containing protein
Genome locationClcChr01:33967389..33968430
RNA-Seq ExpressionClc01G23095
SyntenyClc01G23095
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN49182.1 hypothetical protein Csa_004378 [Cucumis sativus]2.6e-2568.09Show/hide
Query:  MAKTITSIAIFLLAFSLLIFSVSVEG----------QARLELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL
        MAK   SIAIFLLA SLLIF++SV+G          +A LELQCN+  GVKSGDTCF +A  FKL+TDHF+FINPNLNCSALFV QWLC+NAFL
Subjt:  MAKTITSIAIFLLAFSLLIFSVSVEG----------QARLELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL

KGN49183.1 hypothetical protein Csa_003390 [Cucumis sativus]4.6e-2263.16Show/hide
Query:  MAKTI--TSIAIFLLAFSLLIFSVSVEG---------QARLELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL
        MAK +  +S  IFLLAFSLLIFS+SVE          +A LELQCN+V GVK+GDTCFDL   FK++T HF+FINPNLNC+ LF+GQWLCL+A L
Subjt:  MAKTI--TSIAIFLLAFSLLIFSVSVEG---------QARLELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL

TMW90128.1 hypothetical protein EJD97_016167 [Solanum chilense]3.2e-1547.96Show/hide
Query:  MAKTITSIAIFLLAFSLLIFSVSVEGQARL--------------ELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL
        MAK    +  F+L  SLL+F   VE +  +              E++C++VV VK GDTCFD++HTF L  D FN INPNLNC+ALFVGQWLC++  L
Subjt:  MAKTITSIAIFLLAFSLLIFSVSVEGQARL--------------ELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL

XP_016899229.1 PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]8.7e-2977.53Show/hide
Query:  MAKTITSIAIFLLAFSLLIFSVSVEGQA-----RLELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL
        MAK    IAIFLLAF LLIFS+SV+G+       LELQCN+  GVKSGDTCF LAHTFKLSTDHFNFINPNLNCSALFVGQWLC+NAFL
Subjt:  MAKTITSIAIFLLAFSLLIFSVSVEGQA-----RLELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL

XP_031742455.1 lysM domain-containing protein ARB_00327-like [Cucumis sativus]6.9e-2671.91Show/hide
Query:  MAKTITSIAIFLLAFSLLIFSVSVEG-----QARLELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL
        MAK   SIAIFLLA SLLIF++SV+G     +A LELQCN+  GVKSGDTCF +A  FKL+TDHF+FINPNLNCSALFV QWLC+NAFL
Subjt:  MAKTITSIAIFLLAFSLLIFSVSVEG-----QARLELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL

TrEMBL top hitse value%identityAlignment
A0A0A0KHZ8 LysM domain-containing protein2.2e-2263.16Show/hide
Query:  MAKTI--TSIAIFLLAFSLLIFSVSVEG---------QARLELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL
        MAK +  +S  IFLLAFSLLIFS+SVE          +A LELQCN+V GVK+GDTCFDL   FK++T HF+FINPNLNC+ LF+GQWLCL+A L
Subjt:  MAKTI--TSIAIFLLAFSLLIFSVSVEG---------QARLELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL

A0A0A0KLD2 LysM domain-containing protein1.3e-2568.09Show/hide
Query:  MAKTITSIAIFLLAFSLLIFSVSVEG----------QARLELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL
        MAK   SIAIFLLA SLLIF++SV+G          +A LELQCN+  GVKSGDTCF +A  FKL+TDHF+FINPNLNCSALFV QWLC+NAFL
Subjt:  MAKTITSIAIFLLAFSLLIFSVSVEG----------QARLELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL

A0A1S4DTB4 lysM domain-containing protein ARB_00327-like4.2e-2977.53Show/hide
Query:  MAKTITSIAIFLLAFSLLIFSVSVEGQA-----RLELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL
        MAK    IAIFLLAF LLIFS+SV+G+       LELQCN+  GVKSGDTCF LAHTFKLSTDHFNFINPNLNCSALFVGQWLC+NAFL
Subjt:  MAKTITSIAIFLLAFSLLIFSVSVEGQA-----RLELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL

A0A6N2B813 LysM domain-containing protein1.6e-1547.96Show/hide
Query:  MAKTITSIAIFLLAFSLLIFSVSVEGQARL--------------ELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL
        MAK    +  F+L  SLL+F   VE +  +              E++C++VV VK GDTCFD++HTF L  D FN INPNLNC+ALFVGQWLC++  L
Subjt:  MAKTITSIAIFLLAFSLLIFSVSVEGQARL--------------ELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL

M1C1H7 LysM domain-containing protein4.1e-1650Show/hide
Query:  MAKTITSIAIFLLAFSLLIFSVSVEGQARL--------ELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL
        MAK    +  F+L  SLL+F   VE +  +        E++C++VV VK GDTCFD++HTF L +D FN INPNL C+ALFVGQWLC++  L
Subjt:  MAKTITSIAIFLLAFSLLIFSVSVEGQARL--------ELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGGAACTTTGATGGCAACGCTTCCTTGTTCTAAATTTGCTGTTCTATATCCAAAATTTTGCAGCTATAAATTGGAAGACTTTCATAAATGCCATTGCCAACACCC
ATTAACCAAATCAGAGCAATACTTCACCAAAACCAAAGAAACCAAAATTATGGCTAAGACTATTACTTCTATTGCCATCTTCCTGTTGGCTTTCTCTCTTCTCATTTTCT
CAGTTTCTGTAGAAGGTCAAGCAAGGTTGGAGTTGCAATGCAACAGAGTTGTTGGAGTGAAGAGTGGAGACACCTGCTTTGACCTTGCTCACACATTCAAGCTCTCCACT
GACCACTTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTCTTCGTTGGCCAGTGGCTCTGTCTCAATGCTTTTCTTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGGAACTTTGATGGCAACGCTTCCTTGTTCTAAATTTGCTGTTCTATATCCAAAATTTTGCAGCTATAAATTGGAAGACTTTCATAAATGCCATTGCCAACACCC
ATTAACCAAATCAGAGCAATACTTCACCAAAACCAAAGAAACCAAAATTATGGCTAAGACTATTACTTCTATTGCCATCTTCCTGTTGGCTTTCTCTCTTCTCATTTTCT
CAGTTTCTGTAGAAGGTCAAGCAAGGTTGGAGTTGCAATGCAACAGAGTTGTTGGAGTGAAGAGTGGAGACACCTGCTTTGACCTTGCTCACACATTCAAGCTCTCCACT
GACCACTTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTCTTCGTTGGCCAGTGGCTCTGTCTCAATGCTTTTCTTGGCTGA
Protein sequenceShow/hide protein sequence
MFGTLMATLPCSKFAVLYPKFCSYKLEDFHKCHCQHPLTKSEQYFTKTKETKIMAKTITSIAIFLLAFSLLIFSVSVEGQARLELQCNRVVGVKSGDTCFDLAHTFKLST
DHFNFINPNLNCSALFVGQWLCLNAFLG