; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G23140 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G23140
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionVID27-like protein
Genome locationClcChr01:34001952..34002868
RNA-Seq ExpressionClc01G23140
SyntenyClc01G23140
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008441085.2 PREDICTED: VID27-like protein, partial [Cucumis melo]1.3e-5361.92Show/hide
Query:  SSSTLSIPTSHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQRQ----TITNPHSQFQSNLITQQGSQGCSSSASISSSASYEK
        SSS+LSI  SHPLFS L +FF LILL+FPPFLWTSLLSP+LLLAGFLFLSLLRLGATQR+    TITNP    QS  +TQ       S      S+ +E+
Subjt:  SSSTLSIPTSHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQRQ----TITNPHSQFQSNLITQQGSQGCSSSASISSSASYEK

Query:  SFVQWNVRAPLEVIYEDYEEEEEDEGENRDKEFPEPG--------------VAPRIESIERYPSLSLYYPETDSDCSS---VDEMENVCFMWDEEDEDRD
        SFVQWNVRAPLEVIYE YEEEEE+E E  ++E  E                V  R   +ERYPSLSLYYPETDSD SS    DEMENVCFMWD+ED D +
Subjt:  SFVQWNVRAPLEVIYEDYEEEEEDEGENRDKEFPEPG--------------VAPRIESIERYPSLSLYYPETDSDCSS---VDEMENVCFMWDEEDEDRD

Query:  ELIEIALDNKKKPSQFFESEPEEDNLIEIHISPTAFPMF
        ELIEIALD K+  S+ F+   EE+NLIEI+ISPTAFP F
Subjt:  ELIEIALDNKKKPSQFFESEPEEDNLIEIHISPTAFPMF

XP_011658193.1 uncharacterized protein LOC105435960 [Cucumis sativus]1.4e-5763.33Show/hide
Query:  SSSTLSIPTSHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQRQ--------TITNPHSQFQSNLITQQGSQGCSSSASISSSA
        SSS+LSI  SHPLFS L +FF LILL+FPPFLWTSLLSPAL+LAGFLFLSLLRLGATQRQ        TITNP       +   Q  + C+  + ISS  
Subjt:  SSSTLSIPTSHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQRQ--------TITNPHSQFQSNLITQQGSQGCSSSASISSSA

Query:  SYEKSFVQWNVRAPLEVIYEDYEEEEEDEGENRDKEFPEPGVAP------------RIESIERYPSLSLYYPETDSD--CSSVDEMENVCFMWDEEDEDR
         +E+SFVQWNVRAPLEVIYEDYEEE+E+E E  +KE  E  V              R+ S+ERYPSLSLYYPETDSD    + DEMENVCFMWD  DEDR
Subjt:  SYEKSFVQWNVRAPLEVIYEDYEEEEEDEGENRDKEFPEPGVAP------------RIESIERYPSLSLYYPETDSD--CSSVDEMENVCFMWDEEDEDR

Query:  DELIEIALDNKKKPSQFFESEPEEDNLIEIHISPTAFPMF
        DELIEIALD K+  S+FF+   EE+NLIEI ISPTAFPMF
Subjt:  DELIEIALDNKKKPSQFFESEPEEDNLIEIHISPTAFPMF

XP_022926379.1 uncharacterized protein LOC111433544 [Cucurbita moschata]8.7e-3953.28Show/hide
Query:  SSSTLSIP-TSHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQ----RQTITNPHS-------------QFQSNLITQQGSQGC
        ++ T+SI  TS PLFSTL +FF L LLYFP  LW  L SP  LL GFL LSLLRLGATQ    RQT  N +              Q +S+    +   G 
Subjt:  SSSTLSIP-TSHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQ----RQTITNPHS-------------QFQSNLITQQGSQGC

Query:  SSSASISSSASYEKSFVQWNVRAPLEVIYEDYEEEEEDEGENRDKEFPEPGVAPRIESIERYPSLSLYYPETDSDCSSVDEM----------ENVCFMWD
        S  A   S A +E+SFVQWNVRAPLEVIYE+YE E+ D+  + + + PEP    RI  +ERYPSLSLYYPETDSD SS D            +N+C MWD
Subjt:  SSSASISSSASYEKSFVQWNVRAPLEVIYEDYEEEEEDEGENRDKEFPEPGVAPRIESIERYPSLSLYYPETDSDCSSVDEM----------ENVCFMWD

Query:  EEDEDRDELIEIALD-NKKKPSQFFESEPEEDNLIEIH--ISPT
         EDEDRDELIEIALD   KK S+F     EEDNLIEI   ISPT
Subjt:  EEDEDRDELIEIALD-NKKKPSQFFESEPEEDNLIEIH--ISPT

XP_023518306.1 uncharacterized protein LOC111781826 [Cucurbita pepo subsp. pepo]8.7e-3953.28Show/hide
Query:  SSSTLSIP-TSHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQ----RQTITNPHS-------------QFQSNLITQQGSQGC
        ++ T+SI  TS PLFSTL +FF L LLYFP  LW  L SP  LL GFL LSLLRLGATQ    RQT  N +              Q +S+    +   G 
Subjt:  SSSTLSIP-TSHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQ----RQTITNPHS-------------QFQSNLITQQGSQGC

Query:  SSSASISSSASYEKSFVQWNVRAPLEVIYEDYEEEEEDEGENRDKEFPEPGVAPRIESIERYPSLSLYYPETDSDCSSVDEM----------ENVCFMWD
        S  A   S A +E+SFVQWNVRAPLEVIYE+YE E+ D+  + + + PEP    RI  +ERYPSLSLYYPETDSD SS D            +N+C MWD
Subjt:  SSSASISSSASYEKSFVQWNVRAPLEVIYEDYEEEEEDEGENRDKEFPEPGVAPRIESIERYPSLSLYYPETDSDCSSVDEM----------ENVCFMWD

Query:  EEDEDRDELIEIALD-NKKKPSQFFESEPEEDNLIEIH--ISPT
         EDEDRDELIEIALD   KK S+F     EEDNLIEI   ISPT
Subjt:  EEDEDRDELIEIALD-NKKKPSQFFESEPEEDNLIEIH--ISPT

XP_038883304.1 uncharacterized protein LOC120074292 [Benincasa hispida]5.6e-7074.67Show/hide
Query:  MSSSTLSIPTSHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQRQTITNPHSQFQSNLITQQGSQGCS-SSASISSSASYEKSF
        MSSST    TSHPLFSTL +F  LILLYFP FLWTSLLSP +LLAG LFLSLLRLGATQ Q      SQ QSNL  QQ SQ  S +  S S+SAS+EKSF
Subjt:  MSSSTLSIPTSHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQRQTITNPHSQFQSNLITQQGSQGCS-SSASISSSASYEKSF

Query:  VQWNVRAPLEVIYEDYEEEEEDEGENRDKEFPEPGVAPRIESIERYPSLSLYYPETDSDCSSVDEMENVCFMWDEEDEDRDELIEIALDNKKK--PSQFF
        VQWNVRAPLEVIYEDYEEEEE+E    +K+ PEP    R  SI+ YPSLSLYYPETDSD SSVDEMENVCFMWDEEDEDRDELIEI LDNKKK  PS+FF
Subjt:  VQWNVRAPLEVIYEDYEEEEEDEGENRDKEFPEPGVAPRIESIERYPSLSLYYPETDSDCSSVDEMENVCFMWDEEDEDRDELIEIALDNKKK--PSQFF

Query:  ESEPEEDNLIEIHISPTAFPMFNNI
        + EPEEDNLIEI ISPTAFPMF NI
Subjt:  ESEPEEDNLIEIHISPTAFPMFNNI

TrEMBL top hitse value%identityAlignment
A0A0A0KLD5 Uncharacterized protein6.9e-5863.33Show/hide
Query:  SSSTLSIPTSHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQRQ--------TITNPHSQFQSNLITQQGSQGCSSSASISSSA
        SSS+LSI  SHPLFS L +FF LILL+FPPFLWTSLLSPAL+LAGFLFLSLLRLGATQRQ        TITNP       +   Q  + C+  + ISS  
Subjt:  SSSTLSIPTSHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQRQ--------TITNPHSQFQSNLITQQGSQGCSSSASISSSA

Query:  SYEKSFVQWNVRAPLEVIYEDYEEEEEDEGENRDKEFPEPGVAP------------RIESIERYPSLSLYYPETDSD--CSSVDEMENVCFMWDEEDEDR
         +E+SFVQWNVRAPLEVIYEDYEEE+E+E E  +KE  E  V              R+ S+ERYPSLSLYYPETDSD    + DEMENVCFMWD  DEDR
Subjt:  SYEKSFVQWNVRAPLEVIYEDYEEEEEDEGENRDKEFPEPGVAP------------RIESIERYPSLSLYYPETDSD--CSSVDEMENVCFMWDEEDEDR

Query:  DELIEIALDNKKKPSQFFESEPEEDNLIEIHISPTAFPMF
        DELIEIALD K+  S+FF+   EE+NLIEI ISPTAFPMF
Subjt:  DELIEIALDNKKKPSQFFESEPEEDNLIEIHISPTAFPMF

A0A1S3B395 VID27-like protein6.1e-5461.92Show/hide
Query:  SSSTLSIPTSHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQRQ----TITNPHSQFQSNLITQQGSQGCSSSASISSSASYEK
        SSS+LSI  SHPLFS L +FF LILL+FPPFLWTSLLSP+LLLAGFLFLSLLRLGATQR+    TITNP    QS  +TQ       S      S+ +E+
Subjt:  SSSTLSIPTSHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQRQ----TITNPHSQFQSNLITQQGSQGCSSSASISSSASYEK

Query:  SFVQWNVRAPLEVIYEDYEEEEEDEGENRDKEFPEPG--------------VAPRIESIERYPSLSLYYPETDSDCSS---VDEMENVCFMWDEEDEDRD
        SFVQWNVRAPLEVIYE YEEEEE+E E  ++E  E                V  R   +ERYPSLSLYYPETDSD SS    DEMENVCFMWD+ED D +
Subjt:  SFVQWNVRAPLEVIYEDYEEEEEDEGENRDKEFPEPG--------------VAPRIESIERYPSLSLYYPETDSDCSS---VDEMENVCFMWDEEDEDRD

Query:  ELIEIALDNKKKPSQFFESEPEEDNLIEIHISPTAFPMF
        ELIEIALD K+  S+ F+   EE+NLIEI+ISPTAFP F
Subjt:  ELIEIALDNKKKPSQFFESEPEEDNLIEIHISPTAFPMF

A0A6J1CME6 uncharacterized protein LOC1110124584.4e-3650Show/hide
Query:  SHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQRQTITNPHSQFQSNLITQQGSQ-----------------------GCSSSA
        S PLFSTL TFF LILL FP   W  L SP  LL G L LSLLRLGATQR      H + ++ + ++ GS+                       G     
Subjt:  SHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQRQTITNPHSQFQSNLITQQGSQ-----------------------GCSSSA

Query:  SISSSASYEKSFVQWNVRAPLEVIYEDYEEEEEDEGENRDKEFPEPGVAPRIESIERYPSLSLYYPETDSDCSSVDE---------MENVCFMWDEEDED
         I S A +E+SFVQWNVRAPLEVIYE+YE E++ +  N    F E    P    IERYPSLSLYYPETDSD SS DE         ++++CFMWD + ED
Subjt:  SISSSASYEKSFVQWNVRAPLEVIYEDYEEEEEDEGENRDKEFPEPGVAPRIESIERYPSLSLYYPETDSDCSSVDE---------MENVCFMWDEEDED

Query:  RDELIEIALD---NK-KKPSQFFESEPEEDNLIEIHISPT
        RDELIEIALD   NK K  S+ F+   EE+NLIEI ISPT
Subjt:  RDELIEIALD---NK-KKPSQFFESEPEEDNLIEIHISPT

A0A6J1EEY1 uncharacterized protein LOC1114335444.2e-3953.28Show/hide
Query:  SSSTLSIP-TSHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQ----RQTITNPHS-------------QFQSNLITQQGSQGC
        ++ T+SI  TS PLFSTL +FF L LLYFP  LW  L SP  LL GFL LSLLRLGATQ    RQT  N +              Q +S+    +   G 
Subjt:  SSSTLSIP-TSHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQ----RQTITNPHS-------------QFQSNLITQQGSQGC

Query:  SSSASISSSASYEKSFVQWNVRAPLEVIYEDYEEEEEDEGENRDKEFPEPGVAPRIESIERYPSLSLYYPETDSDCSSVDEM----------ENVCFMWD
        S  A   S A +E+SFVQWNVRAPLEVIYE+YE E+ D+  + + + PEP    RI  +ERYPSLSLYYPETDSD SS D            +N+C MWD
Subjt:  SSSASISSSASYEKSFVQWNVRAPLEVIYEDYEEEEEDEGENRDKEFPEPGVAPRIESIERYPSLSLYYPETDSDCSSVDEM----------ENVCFMWD

Query:  EEDEDRDELIEIALD-NKKKPSQFFESEPEEDNLIEIH--ISPT
         EDEDRDELIEIALD   KK S+F     EEDNLIEI   ISPT
Subjt:  EEDEDRDELIEIALD-NKKKPSQFFESEPEEDNLIEIH--ISPT

A0A6J1KY66 uncharacterized protein LOC1114974336.8e-3751.46Show/hide
Query:  SSSTLSIP-TSHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQRQTI--TNPHS---------------QFQSNLITQQGSQGC
        ++ T+SI  TS PL STL +FF L LLYFP  LW  L SP  LL GFL LSLLRLGATQR  +  TN ++               Q +S+    +   G 
Subjt:  SSSTLSIP-TSHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQRQTI--TNPHS---------------QFQSNLITQQGSQGC

Query:  SSSASISSSASYEKSFVQWNVRAPLEVIYEDYEEEEEDEGENRDKEFPEPGVAPRIESIERYPSLSLYYPETDSDCSSVDEM----------ENVCFMWD
        S  A   S   +E+SFVQWNVRAPLEVIYE+YE E+ D+  + + + PEP    RI  +ERYPSLSLYYPETDSD SS D            +++C MWD
Subjt:  SSSASISSSASYEKSFVQWNVRAPLEVIYEDYEEEEEDEGENRDKEFPEPGVAPRIESIERYPSLSLYYPETDSDCSSVDEM----------ENVCFMWD

Query:  EEDEDRDELIEIALD-NKKKPSQFFESEPEEDNLIEIHI
         EDEDRDELIEIALD   KK S+F     EEDNLIEI I
Subjt:  EEDEDRDELIEIALD-NKKKPSQFFESEPEEDNLIEIHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G05018.1 unknown protein1.5e-0730.05Show/hide
Query:  SHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQRQTITNPHSQFQSNLITQQGSQGCSSSASISSSASYEKSFVQWNVR--APL
        SHPLFS   + + + LLYFP      L+S   LL G   +S L LG+T++              I + GS   S    + +       F++WN +  APL
Subjt:  SHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQRQTITNPHSQFQSNLITQQGSQGCSSSASISSSASYEKSFVQWNVR--APL

Query:  EVIYEDYEEEEEDEGENRDKEFPEPGVAPRIESIERYPSLSLYYPETDSDCSSVDEMENVCFMWDEEDEDRDELIEIALDNKKKPSQFFESEPEEDNLIE
        EVI++  EEEE+     +D          R   I+R+PSLS++ PE+DS      E++    +  E D  R     + L+   KP    + + E DN + 
Subjt:  EVIYEDYEEEEEDEGENRDKEFPEPGVAPRIESIERYPSLSLYYPETDSDCSSVDEMENVCFMWDEEDEDRDELIEIALDNKKKPSQFFESEPEEDNLIE

Query:  IHI
        I +
Subjt:  IHI

AT4G21500.1 unknown protein3.6e-2239.46Show/hide
Query:  SHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQRQTITNPHSQFQSNLITQQGSQGCSSSASISSSASYEKSFVQWNVRAPLEV
        SHPLFS   T + LIL+YFP  L    LSP LL++G L LSLLRLG+T R+  T P   ++         +       +   +     FV+WN+RAPLEV
Subjt:  SHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQRQTITNPHSQFQSNLITQQGSQGCSSSASISSSASYEKSFVQWNVRAPLEV

Query:  IYEDYEEEEEDEGENRDKEFPEPGVAPRIESIERYPSLSLYYPETDSDCSSV-------------DEMENVCFMWDEEDE--DRDELIEIALD----NKK
        I+E YE+EEE+E E       +P    R   +ER+PSLSL YPE+DS+  S              +  EN+ F W+E++     + LIEI LD    N+K
Subjt:  IYEDYEEEEEDEGENRDKEFPEPGVAPRIESIERYPSLSLYYPETDSDCSSV-------------DEMENVCFMWDEEDE--DRDELIEIALD----NKK

Query:  KPSQF-FESEPEEDNLIEIHISP
          S+   +   EED LIEI + P
Subjt:  KPSQF-FESEPEEDNLIEIHISP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCTTCTACCCTTTCCATTCCCACCTCCCATCCTCTGTTTTCTACTCTTTTCACTTTCTTCCTTCTCATTCTCCTCTACTTTCCCCCTTTTCTCTGGACTTCCCT
CCTCTCTCCCGCCCTCCTCCTCGCCGGATTCCTCTTCCTCTCCCTCCTCCGCCTCGGCGCTACTCAACGCCAAACCATCACCAACCCCCACTCTCAATTTCAATCCAATT
TAATTACCCAACAAGGATCACAAGGCTGTAGTAGTTCTGCTTCCATTTCTTCCTCCGCCTCCTACGAGAAATCTTTCGTACAGTGGAACGTCAGGGCACCGTTGGAGGTT
ATTTACGAAGATTACGAAGAAGAAGAAGAAGACGAAGGCGAAAATCGCGATAAGGAGTTTCCGGAGCCCGGAGTGGCACCACGCATCGAATCAATCGAGAGGTATCCGTC
GCTTTCGCTCTACTATCCGGAAACAGATTCCGATTGCTCGTCGGTGGATGAGATGGAGAATGTGTGTTTCATGTGGGATGAGGAGGATGAAGACAGAGATGAACTCATCG
AGATTGCTTTGGATAACAAGAAGAAGCCATCCCAATTTTTTGAGTCGGAGCCGGAGGAGGATAATTTGATCGAGATTCATATTTCTCCAACCGCTTTTCCAATGTTTAAT
AATATTTAA
mRNA sequenceShow/hide mRNA sequence
AACGACGGAAGAAATTGGTGACCACATTCCCATTCACATTGGTGGAATTGGTTCATAAACCAAAAAAGCCAATGATACCTTATTCTGGAAACCAATGAAGCATGTCTTCT
TCTACCCTTTCCATTCCCACCTCCCATCCTCTGTTTTCTACTCTTTTCACTTTCTTCCTTCTCATTCTCCTCTACTTTCCCCCTTTTCTCTGGACTTCCCTCCTCTCTCC
CGCCCTCCTCCTCGCCGGATTCCTCTTCCTCTCCCTCCTCCGCCTCGGCGCTACTCAACGCCAAACCATCACCAACCCCCACTCTCAATTTCAATCCAATTTAATTACCC
AACAAGGATCACAAGGCTGTAGTAGTTCTGCTTCCATTTCTTCCTCCGCCTCCTACGAGAAATCTTTCGTACAGTGGAACGTCAGGGCACCGTTGGAGGTTATTTACGAA
GATTACGAAGAAGAAGAAGAAGACGAAGGCGAAAATCGCGATAAGGAGTTTCCGGAGCCCGGAGTGGCACCACGCATCGAATCAATCGAGAGGTATCCGTCGCTTTCGCT
CTACTATCCGGAAACAGATTCCGATTGCTCGTCGGTGGATGAGATGGAGAATGTGTGTTTCATGTGGGATGAGGAGGATGAAGACAGAGATGAACTCATCGAGATTGCTT
TGGATAACAAGAAGAAGCCATCCCAATTTTTTGAGTCGGAGCCGGAGGAGGATAATTTGATCGAGATTCATATTTCTCCAACCGCTTTTCCAATGTTTAATAATATTTAA
TACGGATTTTAGTTTCTCGGTTCAGTTTTAGATTCCATTTTCATCAACCAATTCCTTTCATCCATATTCAATTTCTGTTTCCAATTTAATTTGGATACAACACTTGGACA
CCTTTATGTTCTATGCTTTCCGATCATAACTTTTTTT
Protein sequenceShow/hide protein sequence
MSSSTLSIPTSHPLFSTLFTFFLLILLYFPPFLWTSLLSPALLLAGFLFLSLLRLGATQRQTITNPHSQFQSNLITQQGSQGCSSSASISSSASYEKSFVQWNVRAPLEV
IYEDYEEEEEDEGENRDKEFPEPGVAPRIESIERYPSLSLYYPETDSDCSSVDEMENVCFMWDEEDEDRDELIEIALDNKKKPSQFFESEPEEDNLIEIHISPTAFPMFN
NI