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Clc01G23190 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G23190
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationClcChr01:34040384..34043693
RNA-Seq ExpressionClc01G23190
SyntenyClc01G23190
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF40912.1 conserved hypothetical protein [Ricinus communis]2.7e-0553.7Show/hide
Query:  MNNVNGQRLGRRMSGRLIPKRGQVKMGIMVGLAQTVTSIFSHSHNTQQQHCTST
        M  ++ +++ RR+SGR IPKRGQVK+GI+VGLA +V SIFSHSH++++   T++
Subjt:  MNNVNGQRLGRRMSGRLIPKRGQVKMGIMVGLAQTVTSIFSHSHNTQQQHCTST

KAA0052717.1 hypothetical protein E6C27_scaffold120G003300 [Cucumis melo var. makuwa]4.4e-1991.23Show/hide
Query:  MGGEAKMMNNVNGQRLGRRMSGRLIPKRGQVKMGIMVGLAQTVTSIFSHSHNTQQQH
        MG EAKMMNN+NGQRLGRR+SGRLIPKRGQVKMGIMVGLAQTVTSIFS+SH+TQQQH
Subjt:  MGGEAKMMNNVNGQRLGRRMSGRLIPKRGQVKMGIMVGLAQTVTSIFSHSHNTQQQH

KAG5622653.1 hypothetical protein H5410_007871 [Solanum commersonii]1.5e-0638.46Show/hide
Query:  MAGTRINAINGGNFSRKYS-DRLIPKRGQIK---------------PPARIAGRDAMWFRASKTSTTTNFLLLPLKSSLWKMGGEAKMMNNVNGQRLGRR
        MAG R   INGGN SR+    R IPKRGQ+K                  R+A  + +  R+S       F ++     + KM G  K M N  G  L   
Subjt:  MAGTRINAINGGNFSRKYS-DRLIPKRGQIK---------------PPARIAGRDAMWFRASKTSTTTNFLLLPLKSSLWKMGGEAKMMNNVNGQRLGRR

Query:  MSGRLIPKRGQVKMGIMVGLAQTVTSIFSH
          GR IPKRGQVK+ I++GLA +++SIFS+
Subjt:  MSGRLIPKRGQVKMGIMVGLAQTVTSIFSH

KAG6603714.1 hypothetical protein SDJN03_04323, partial [Cucurbita argyrosperma subsp. sororia]5.0e-0735.71Show/hide
Query:  MAGTRINAINGGNFSRKYSDRLIPKRGQI--------KPPARIA--GRDAMWF----------RASKTSTTTNF------LLLPLKSSLWKMGGEAKMMN
        M G+R + I+G  +S + S R IPKRGQ+        K   +I   G   + F          +  K      F      ++LP  +S  +M G +  + 
Subjt:  MAGTRINAINGGNFSRKYSDRLIPKRGQI--------KPPARIA--GRDAMWF----------RASKTSTTTNF------LLLPLKSSLWKMGGEAKMMN

Query:  NVNGQRLGRRMSGRLIPKRGQVKMGIMVGLAQTVTSIFSH
         +NG  L R+ S RLIPKRGQV MGI+ G+A +VTS+FSH
Subjt:  NVNGQRLGRRMSGRLIPKRGQVKMGIMVGLAQTVTSIFSH

KAG7026593.1 Anaphase-promoting complex subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma]7.0e-0968Show/hide
Query:  MNNVNGQRLGRRMSGRLIPKRGQVKMGIMVGLAQTVTSIFSHSHNTQQQH
        MNN+NG+R+ RR+ GR IPKRGQVKMGIMVG+  TVTSIFSH H     H
Subjt:  MNNVNGQRLGRRMSGRLIPKRGQVKMGIMVGLAQTVTSIFSHSHNTQQQH

TrEMBL top hitse value%identityAlignment
A0A0A0KLE0 Uncharacterized protein1.1e-0464.29Show/hide
Query:  MNNVNGQRLGRRMSGRLIPKRGQVKMGIMVGLAQTVTSIFSH
        +N +N   L R+ S RLIPKRGQVK+GI+VG+A +VTSIFSH
Subjt:  MNNVNGQRLGRRMSGRLIPKRGQVKMGIMVGLAQTVTSIFSH

A0A2H5N387 Uncharacterized protein1.5e-0459.18Show/hide
Query:  VNGQRLGRRM-----SGRLIPKRGQVKMGIMVGLAQTVTSIFSHSHNTQ
        +NG  + RR+     SGR IPKRGQVKM I+VGLA +V SIFSHSH+ +
Subjt:  VNGQRLGRRM-----SGRLIPKRGQVKMGIMVGLAQTVTSIFSHSHNTQ

A0A5A7UDZ4 Uncharacterized protein2.1e-1991.23Show/hide
Query:  MGGEAKMMNNVNGQRLGRRMSGRLIPKRGQVKMGIMVGLAQTVTSIFSHSHNTQQQH
        MG EAKMMNN+NGQRLGRR+SGRLIPKRGQVKMGIMVGLAQTVTSIFS+SH+TQQQH
Subjt:  MGGEAKMMNNVNGQRLGRRMSGRLIPKRGQVKMGIMVGLAQTVTSIFSHSHNTQQQH

A0A6N2L7Q2 Uncharacterized protein (Fragment)1.2e-0637.82Show/hide
Query:  AGTRINAINGGNFSRKYSDRLIPKRGQIKPP--ARIAGRDAMWFRASK----TSTTTNFLLLPLKSSLWKMGGEAKMMNNVNGQRLGRRMSGRLIPKRGQ
        AG R   I+G ++S+++  RLIPKRGQ+K      +A   A  F   K        T  + L       +M G A+ +   NG +  R  + R IPKRGQ
Subjt:  AGTRINAINGGNFSRKYSDRLIPKRGQIKPP--ARIAGRDAMWFRASK----TSTTTNFLLLPLKSSLWKMGGEAKMMNNVNGQRLGRRMSGRLIPKRGQ

Query:  VKMGIMVGLAQTVTSIFSH
        VK+ I VGLA + +S+FSH
Subjt:  VKMGIMVGLAQTVTSIFSH

B9S603 Uncharacterized protein1.3e-0553.7Show/hide
Query:  MNNVNGQRLGRRMSGRLIPKRGQVKMGIMVGLAQTVTSIFSHSHNTQQQHCTST
        M  ++ +++ RR+SGR IPKRGQVK+GI+VGLA +V SIFSHSH++++   T++
Subjt:  MNNVNGQRLGRRMSGRLIPKRGQVKMGIMVGLAQTVTSIFSHSHNTQQQHCTST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGGTACCAGGATCAACGCGATTAACGGTGGAAATTTTTCGAGGAAGTATTCTGACCGTTTGATTCCAAAACGGGGTCAGATAAAACCGCCGGCTCGTATTGCCGG
AAGAGATGCCATGTGGTTCAGAGCATCCAAAACTTCAACAACAACAAATTTTCTTTTACTTCCTCTTAAGTCATCTCTCTGGAAAATGGGTGGAGAAGCTAAGATGATGA
ACAACGTCAACGGTCAGAGATTGGGAAGGAGGATGTCTGGGCGTTTGATCCCAAAGAGAGGGCAAGTGAAGATGGGAATCATGGTGGGGTTGGCTCAAACTGTCACTTCC
ATCTTCTCTCACAGTCACAATACTCAACAACAACATTGTACATCTACATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGGTACCAGGATCAACGCGATTAACGGTGGAAATTTTTCGAGGAAGTATTCTGACCGTTTGATTCCAAAACGGGGTCAGATAAAACCGCCGGCTCGTATTGCCGG
AAGAGATGCCATGTGGTTCAGAGCATCCAAAACTTCAACAACAACAAATTTTCTTTTACTTCCTCTTAAGTCATCTCTCTGGAAAATGGGTGGAGAAGCTAAGATGATGA
ACAACGTCAACGGTCAGAGATTGGGAAGGAGGATGTCTGGGCGTTTGATCCCAAAGAGAGGGCAAGTGAAGATGGGAATCATGGTGGGGTTGGCTCAAACTGTCACTTCC
ATCTTCTCTCACAGTCACAATACTCAACAACAACATTGTACATCTACATAG
Protein sequenceShow/hide protein sequence
MAGTRINAINGGNFSRKYSDRLIPKRGQIKPPARIAGRDAMWFRASKTSTTTNFLLLPLKSSLWKMGGEAKMMNNVNGQRLGRRMSGRLIPKRGQVKMGIMVGLAQTVTS
IFSHSHNTQQQHCTST