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Clc01G23267 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G23267
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionB3 domain-containing protein
Genome locationClcChr01:34097086..34097397
RNA-Seq ExpressionClc01G23267
SyntenyClc01G23267
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG4960521.1 hypothetical protein JHK87_037154 [Glycine soja]1.0e-1388.1Show/hide
Query:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTGLR
        KGKEWIFQFRFWPNNN+ MYVLEGVTPCIQSMQLQA DTG +
Subjt:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTGLR
KAG5104616.1 hypothetical protein JHK82_041586 [Glycine max]1.3e-1392.5Show/hide
Query:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTG
        KGKEWIFQFRFWPNNN+ MYVLEGVTPCIQSMQLQA DTG
Subjt:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTG
RZB91459.1 B3 domain-containing protein [Glycine soja]6.5e-1390Show/hide
Query:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTG
        KGKEWIFQFRFWPNNN+ MYVLEGVTPCIQSMQLQA D G
Subjt:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTG
THG19995.1 hypothetical protein TEA_001823 [Camellia sinensis var. sinensis]1.3e-1392.5Show/hide
Query:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTG
        KGKEWIFQFRFWPNNN+ MYVLEGVTPCIQSMQLQA DTG
Subjt:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTG
VDC83944.1 unnamed protein product [Brassica rapa]1.7e-1390Show/hide
Query:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTG
        KGKEW+FQFRFWPNNN+ MYVLEGVTPCIQSMQLQA DTG
Subjt:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTG
TrEMBL top hitse value%identityAlignment
A0A2K3LKV0 B3 domain-containing protein (Fragment)3.2e-1384.44Show/hide
Query:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTGLRWHL
        KGKEWIFQFRFWPNNN+ MYVLEGVTPCIQSMQLQA DT   W L
Subjt:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTGLRWHL
A0A3P6A8Z9 Uncharacterized protein8.3e-1490Show/hide
Query:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTG
        KGKEW+FQFRFWPNNN+ MYVLEGVTPCIQSMQLQA DTG
Subjt:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTG
A0A445IZD0 B3 domain-containing protein3.2e-1390Show/hide
Query:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTG
        KGKEWIFQFRFWPNNN+ MYVLEGVTPCIQSMQLQA D G
Subjt:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTG
A0A4S4EU61 Uncharacterized protein6.4e-1492.5Show/hide
Query:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTG
        KGKEWIFQFRFWPNNN+ MYVLEGVTPCIQSMQLQA DTG
Subjt:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTG
A0A6P4A427 B3 domain-containing protein Os07g0563300-like3.2e-1390Show/hide
Query:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTG
        KGKEWIFQFRFWPNNN+ MYVLEGVTPCIQSMQLQA D G
Subjt:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTG
SwissProt top hitse value%identityAlignment
O65420 B3 domain-containing transcription factor VAL39.2e-1059.26Show/hide
Query:  GKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTGLRWHL-----LLLGF
        GKEW FQFRFWP++   +YVLEGVTP IQ++QLQA DT +   L     L+LGF
Subjt:  GKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTGLRWHL-----LLLGF
Q0D5G4 B3 domain-containing protein Os07g05633005.5e-1589.47Show/hide
Query:  GKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT
        GKEW+FQFRFWPNNN+ MYVLEGVTPCIQSMQLQA DT
Subjt:  GKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT
Q5CCK4 B3 domain-containing transcription repressor VAL21.5e-1589.74Show/hide
Query:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT
        KGKEW+FQFRFWPNNN+ MYVLEGVTPCIQSMQLQA DT
Subjt:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT
Q6Z3U3 B3 domain-containing protein Os07g06797001.6e-1487.18Show/hide
Query:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT
        KGKEW FQFRFWPNNN+ MYVLEGVTPCIQS+QLQA DT
Subjt:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT
Q8W4L5 B3 domain-containing transcription repressor VAL11.8e-1379.49Show/hide
Query:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT
        +G+EW FQFR+WPNNN+ MYVLEGVTPCIQSM LQA DT
Subjt:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT
Arabidopsis top hitse value%identityAlignment
AT2G30470.1 high-level expression of sugar-inducible gene 21.3e-1479.49Show/hide
Query:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT
        +G+EW FQFR+WPNNN+ MYVLEGVTPCIQSM LQA DT
Subjt:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT
AT3G26790.1 AP2/B3-like transcriptional factor family protein1.6e-0447.06Show/hide
Query:  WIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVD
        W F++R+WPNNN+ MYVLE     + +  LQ  D
Subjt:  WIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVD
AT4G21550.1 VP1/ABI3-like 36.5e-1159.26Show/hide
Query:  GKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTGLRWHL-----LLLGF
        GKEW FQFRFWP++   +YVLEGVTP IQ++QLQA DT +   L     L+LGF
Subjt:  GKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTGLRWHL-----LLLGF
AT4G32010.1 HSI2-like 11.0e-1689.74Show/hide
Query:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT
        KGKEW+FQFRFWPNNN+ MYVLEGVTPCIQSMQLQA DT
Subjt:  KGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATACCTTCAACATGCAGGCCTATTTTCCATCAATTTTCCAGCCCGAGGGATTACCTCTAAAAGTACAGGATGCAAATGGAAAGGAAAGGAATGGATATTTCAGTT
CCGTTTTTGGCCTAATAACAATACCGGGATGTATGTTCTTGAGGGGGTTACTCCCTGCATACAGTCCATGCAATTGCAAGCAGTTGACACAGGTTTGAGGTGGCATTTGC
TTCTTTTGGGGTTCTTTTTTTTTAACTGGAAGTGGTTTGTAATCTTTTTCAACAATTGGCACTACCGAGACTTGCCAAGGCCAGTCTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGATATACCTTCAACATGCAGGCCTATTTTCCATCAATTTTCCAGCCCGAGGGATTACCTCTAAAAGTACAGGATGCAAATGGAAAGGAAAGGAATGGATATTTCAGTT
CCGTTTTTGGCCTAATAACAATACCGGGATGTATGTTCTTGAGGGGGTTACTCCCTGCATACAGTCCATGCAATTGCAAGCAGTTGACACAGGTTTGAGGTGGCATTTGC
TTCTTTTGGGGTTCTTTTTTTTTAACTGGAAGTGGTTTGTAATCTTTTTCAACAATTGGCACTACCGAGACTTGCCAAGGCCAGTCTATTAG
Protein sequenceShow/hide protein sequence
MIYLQHAGLFSINFPARGITSKSTGCKWKGKEWIFQFRFWPNNNTGMYVLEGVTPCIQSMQLQAVDTGLRWHLLLLGFFFFNWKWFVIFFNNWHYRDLPRPVY