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Clc01G23710 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G23710
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionSquamosa promoter-binding-like protein
Genome locationClcChr01:34420952..34423527
RNA-Seq ExpressionClc01G23710
SyntenyClc01G23710
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009908 - flower development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004333 - SBP domain
IPR036893 - SBP domain superfamily
IPR044817 - Squamosa promoter-binding-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7026565.1 Squamosa promoter-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]6.9e-5073.43Show/hide
Query:  MANSEDQGWDDMV----VEEDDDNDDNEEIGFVEDERRRRSALTGGRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFC
        M +S DQGW + V     EE+DD+DD++EIGFV+DER++R+A     G  GGRT+V RCQAD CN DL+GAR YHRRHKVCEFH+KAA VILAGLEQRFC
Subjt:  MANSEDQGWDDMV----VEEDDDNDDNEEIGFVEDERRRRSALTGGRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFC

Query:  QQCSRFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSST
        QQCSRFH+VSEFD+TKRSCRRRLAGHNERRRK LPDF GQSST
Subjt:  QQCSRFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSST

XP_004134953.1 squamosa promoter-binding protein 1 [Cucumis sativus]7.9e-6285.11Show/hide
Query:  MANSEDQGWDDMVVEEDDDNDDNEEIGFVEDERRRRSALTGGR-GGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQC
        MANSEDQGW+DM+V++DDD++DNEEIGFV++ERRRRS LT  R GG GGR+TVARCQADGCNADL+GA+PYHRRHKVCEFH++AA VILAGLEQRFCQQC
Subjt:  MANSEDQGWDDMVVEEDDDNDDNEEIGFVEDERRRRSALTGGR-GGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQC

Query:  SRFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSSTN
        SRFHA+SEFDDTKRSCR RLAGHNERRRKILPDFHGQSSTN
Subjt:  SRFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSSTN

XP_008439842.1 PREDICTED: squamosa promoter-binding protein 1 [Cucumis melo]7.4e-6084.51Show/hide
Query:  MANSEDQGWDDMVVEEDDDND-DNEEIGFVEDERRRRSALTGGR-GGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQ
        MANS D  W+DM++++DDD+D D EE+GFV++ERRRRS LT GR GG GGR+TVARCQADGCNADL+GARPYHRRHKVCEFHAKAA VILAGLEQRFCQQ
Subjt:  MANSEDQGWDDMVVEEDDDND-DNEEIGFVEDERRRRSALTGGR-GGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQ

Query:  CSRFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSSTN
        CSRFHAVSEFDDTKRSCR RLAGHNERRRKILPDFHGQSSTN
Subjt:  CSRFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSSTN

XP_023004048.1 squamosa promoter-binding-like protein 3 [Cucurbita maxima]6.3e-5174.47Show/hide
Query:  MANSEDQGWDDMV--VEEDDDNDDNEEIGFVEDERRRRSALTGGRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQ
        M NS DQGW D V   EE+++ DD++E+GFVEDER++R+  +   G  GGRT+VARCQAD CN DL+GAR YHRRHKVCEFH+KAA VILAGLEQRFCQQ
Subjt:  MANSEDQGWDDMV--VEEDDDNDDNEEIGFVEDERRRRSALTGGRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQ

Query:  CSRFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSST
        CSRFH+VSEFD+TKRSCRRRLAGHNERRRK LPDF GQSST
Subjt:  CSRFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSST

XP_038880830.1 squamosa promoter-binding protein 1-like [Benincasa hispida]8.2e-6795.04Show/hide
Query:  MANSEDQGWDDMVVEEDDDNDDNEEIGFVEDERRRRSALTGGRGGS-GGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQC
        M NSEDQ W+DMVVEEDDDNDDNEEIGFVEDERRRRSALTGGRGGS GGR TVARCQADGCNADLS ARPYHRRHKVCEFHAKAA VILAGLEQRFCQQC
Subjt:  MANSEDQGWDDMVVEEDDDNDDNEEIGFVEDERRRRSALTGGRGGS-GGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQC

Query:  SRFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSSTN
        SRFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSSTN
Subjt:  SRFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSSTN

TrEMBL top hitse value%identityAlignment
A0A0A0KK74 SBP-type domain-containing protein3.8e-6285.11Show/hide
Query:  MANSEDQGWDDMVVEEDDDNDDNEEIGFVEDERRRRSALTGGR-GGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQC
        MANSEDQGW+DM+V++DDD++DNEEIGFV++ERRRRS LT  R GG GGR+TVARCQADGCNADL+GA+PYHRRHKVCEFH++AA VILAGLEQRFCQQC
Subjt:  MANSEDQGWDDMVVEEDDDNDDNEEIGFVEDERRRRSALTGGR-GGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQC

Query:  SRFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSSTN
        SRFHA+SEFDDTKRSCR RLAGHNERRRKILPDFHGQSSTN
Subjt:  SRFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSSTN

A0A1S3AZN8 squamosa promoter-binding protein 13.6e-6084.51Show/hide
Query:  MANSEDQGWDDMVVEEDDDND-DNEEIGFVEDERRRRSALTGGR-GGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQ
        MANS D  W+DM++++DDD+D D EE+GFV++ERRRRS LT GR GG GGR+TVARCQADGCNADL+GARPYHRRHKVCEFHAKAA VILAGLEQRFCQQ
Subjt:  MANSEDQGWDDMVVEEDDDND-DNEEIGFVEDERRRRSALTGGR-GGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQ

Query:  CSRFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSSTN
        CSRFHAVSEFDDTKRSCR RLAGHNERRRKILPDFHGQSSTN
Subjt:  CSRFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSSTN

A0A6J1CK81 squamosa promoter-binding protein 11.0e-4680.31Show/hide
Query:  EEDDDNDDNEEIGFVEDERRRRSALTGGRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQCSRFHAVSEFDDTKRS
        EE++D     E+GF E+ER+ R AL+GGR G  GR+TVARCQADGCNADLSGARPYHRRHKVCEFHAKAA VILAGLEQRFCQQCSRFHAVSEFD+TKRS
Subjt:  EEDDDNDDNEEIGFVEDERRRRSALTGGRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQCSRFHAVSEFDDTKRS

Query:  CRRRLAGHNERRRKIL-PDFH-GQSST
        CRRRLAGHNERRRK L  +FH GQSST
Subjt:  CRRRLAGHNERRRKIL-PDFH-GQSST

A0A6J1EFR3 Squamosa promoter-binding-like protein2.8e-4972.03Show/hide
Query:  MANSEDQGWDDMV----VEEDDDNDDNEEIGFVEDERRRRSALTGGRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFC
        M +S DQGW + V     EE++++DD++EIGFV+DER++R+A     G  GGRT+V RCQAD CN DL+GAR YHRRHKVCEFH+KAA VILAGLEQRFC
Subjt:  MANSEDQGWDDMV----VEEDDDNDDNEEIGFVEDERRRRSALTGGRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFC

Query:  QQCSRFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSST
        QQCSRFH+VSEFD+TKRSCRRRLAGHNERRRK LPDF GQSST
Subjt:  QQCSRFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSST

A0A6J1KYC6 Squamosa promoter-binding-like protein3.0e-5174.47Show/hide
Query:  MANSEDQGWDDMV--VEEDDDNDDNEEIGFVEDERRRRSALTGGRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQ
        M NS DQGW D V   EE+++ DD++E+GFVEDER++R+  +   G  GGRT+VARCQAD CN DL+GAR YHRRHKVCEFH+KAA VILAGLEQRFCQQ
Subjt:  MANSEDQGWDDMV--VEEDDDNDDNEEIGFVEDERRRRSALTGGRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQ

Query:  CSRFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSST
        CSRFH+VSEFD+TKRSCRRRLAGHNERRRK LPDF GQSST
Subjt:  CSRFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSST

SwissProt top hitse value%identityAlignment
A2YFT9 Squamosa promoter-binding-like protein 104.5e-2863Show/hide
Query:  DERRRRSALTG--GRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRRRLAGHNERRRK
        D    RS L G  G G  G      RCQA+GC ADLSGA+ YHRRHKVCE+HAKA+ V  +G +QRFCQQCSRFH ++EFD+ KRSCR+RLA HN RRRK
Subjt:  DERRRRSALTG--GRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRRRLAGHNERRRK

Q0DAE8 Squamosa promoter-binding-like protein 104.5e-2863Show/hide
Query:  DERRRRSALTG--GRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRRRLAGHNERRRK
        D    RS L G  G G  G      RCQA+GC ADLSGA+ YHRRHKVCE+HAKA+ V  +G +QRFCQQCSRFH ++EFD+ KRSCR+RLA HN RRRK
Subjt:  DERRRRSALTG--GRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRRRLAGHNERRRK

Q0E3F8 Squamosa promoter-binding-like protein 53.1e-2971.76Show/hide
Query:  RCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSS
        RCQA+GC ADLS A+ YHRRHKVC+FHAKAAAV+ AG +QRFCQQCSRFH ++EFD+ KRSCR+RL  HN RRRK  P   GQSS
Subjt:  RCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSS

Q38741 Squamosa promoter-binding protein 11.7e-3056.41Show/hide
Query:  DDNDDNEEIGFVEDERRRRSALTGGRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRR
        +  ++ ++IG  ED ++ R+    G+  SG  +T   CQ + C A+++ A+PYHRRHKVCEFHAKA  V+ +GL+QRFCQQCSRFH +SEFD+ KRSCRR
Subjt:  DDNDDNEEIGFVEDERRRRSALTGGRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRR

Query:  RLAGHNERRRKILPDFH
        RLAGHNERRRK   D H
Subjt:  RLAGHNERRRKILPDFH

Q8GXL3 Squamosa promoter-binding-like protein 82.4e-2968.97Show/hide
Query:  GRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRRRLAGHNERRRK
        G  G     +  RCQA+GCNADLS A+ YHRRHKVCEFH+KA+ V+ AGL QRFCQQCSRFH +SEFD+ KRSCR+RLA HN RRRK
Subjt:  GRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRRRLAGHNERRRK

Arabidopsis top hitse value%identityAlignment
AT1G02065.1 squamosa promoter binding protein-like 81.7e-3068.97Show/hide
Query:  GRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRRRLAGHNERRRK
        G  G     +  RCQA+GCNADLS A+ YHRRHKVCEFH+KA+ V+ AGL QRFCQQCSRFH +SEFD+ KRSCR+RLA HN RRRK
Subjt:  GRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRRRLAGHNERRRK

AT1G53160.1 squamosa promoter binding protein-like 45.5e-2954.62Show/hide
Query:  SEDQGW---DDMVVEED--DDNDDNEEIGFVEDERRRRSALTGGRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQ
        S+ QG+      +VEED   D D+ EE+G        R  + G RG      ++  CQ D C AD+  A+ YHRRHKVCE HAKA++V L+GL QRFCQQ
Subjt:  SEDQGW---DDMVVEED--DDNDDNEEIGFVEDERRRRSALTGGRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQ

Query:  CSRFHAVSEFDDTKRSCRRRLAGHNERRRK
        CSRFH + EFD+ KRSCRRRLAGHNERRRK
Subjt:  CSRFHAVSEFDDTKRSCRRRLAGHNERRRK

AT1G53160.2 squamosa promoter binding protein-like 45.5e-2954.62Show/hide
Query:  SEDQGW---DDMVVEED--DDNDDNEEIGFVEDERRRRSALTGGRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQ
        S+ QG+      +VEED   D D+ EE+G        R  + G RG      ++  CQ D C AD+  A+ YHRRHKVCE HAKA++V L+GL QRFCQQ
Subjt:  SEDQGW---DDMVVEED--DDNDDNEEIGFVEDERRRRSALTGGRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQ

Query:  CSRFHAVSEFDDTKRSCRRRLAGHNERRRK
        CSRFH + EFD+ KRSCRRRLAGHNERRRK
Subjt:  CSRFHAVSEFDDTKRSCRRRLAGHNERRRK

AT2G33810.1 squamosa promoter binding protein-like 32.1e-2854.24Show/hide
Query:  EEDDDNDDNEEIGFVEDERRRRSALTGGRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQCSRFHAVSEFDDTKRS
        EE+++ ++ E+    E+E        G    S G      CQ + C AD+S A+ YH+RHKVC+FHAKA  V ++GL QRFCQQCSRFHA+SEFD+ KRS
Subjt:  EEDDDNDDNEEIGFVEDERRRRSALTGGRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQCSRFHAVSEFDDTKRS

Query:  CRRRLAGHNERRRKILPD
        CRRRLAGHNERRRK   D
Subjt:  CRRRLAGHNERRRKILPD

AT3G15270.1 squamosa promoter binding protein-like 51.2e-2852.21Show/hide
Query:  EDQGWDDMVVEEDDDN--DDNEEIGFVEDERRRRSALTGGRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQCSRF
        +D+     +VEE+ +N  D  EE G   DE +R+  +   RG S  R     CQ D C  +L+ A+ Y+RRH+VCE HAKA+A  +AG+ QRFCQQCSRF
Subjt:  EDQGWDDMVVEEDDDN--DDNEEIGFVEDERRRRSALTGGRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQCSRF

Query:  HAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSS
        H + EFD+ KRSCRRRLAGHNERRRKI  D  G+ S
Subjt:  HAVSEFDDTKRSCRRRLAGHNERRRKILPDFHGQSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAACTCAGAAGATCAAGGTTGGGACGACATGGTGGTAGAAGAAGATGACGACAACGATGACAACGAAGAAATAGGGTTTGTAGAAGATGAGAGGAGGAGGAGATC
AGCTTTAACCGGTGGTCGAGGTGGCAGTGGAGGGAGGACAACGGTGGCGCGTTGCCAAGCTGATGGCTGCAATGCCGATCTGAGCGGCGCCAGACCGTACCACCGCCGCC
ACAAGGTCTGCGAGTTCCATGCCAAGGCGGCCGCCGTGATTCTGGCCGGATTGGAACAGCGATTTTGCCAGCAGTGTAGTAGGTTTCATGCAGTATCAGAGTTCGATGAC
ACGAAGAGAAGCTGCCGGAGGCGATTGGCCGGACACAATGAACGCCGCCGCAAAATCTTACCGGACTTCCATGGCCAATCCTCCACTAATTGA
mRNA sequenceShow/hide mRNA sequence
GTAAAAACCTATTATAGAAAAAGAAATACAAGCTTTGGTCTTTTTCACTCACTTGTCATTTCTCCATTCTAGTTTATATTATATATATAGTCATGTGGTTCTAAGGTTCT
CCGCAAAATGGCGAACTCAGAAGATCAAGGTTGGGACGACATGGTGGTAGAAGAAGATGACGACAACGATGACAACGAAGAAATAGGGTTTGTAGAAGATGAGAGGAGGA
GGAGATCAGCTTTAACCGGTGGTCGAGGTGGCAGTGGAGGGAGGACAACGGTGGCGCGTTGCCAAGCTGATGGCTGCAATGCCGATCTGAGCGGCGCCAGACCGTACCAC
CGCCGCCACAAGGTCTGCGAGTTCCATGCCAAGGCGGCCGCCGTGATTCTGGCCGGATTGGAACAGCGATTTTGCCAGCAGTGTAGTAGGTTTCATGCAGTATCAGAGTT
CGATGACACGAAGAGAAGCTGCCGGAGGCGATTGGCCGGACACAATGAACGCCGCCGCAAAATCTTACCGGACTTCCATGGCCAATCCTCCACTAATTGACCACACTCAG
TAGTACTTTGTCTCTTCACACAGACAAAAACACCTAATTAATTAACAATAATACTACTCCTTAATCACTAAAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAGTTGGAGTTTTGTTTTGAGAGAGAGTCACCGGTCACCGGTTACCGACACCGTCATGAAAATGAATTCTATGCTCTCTCTCTTCTGTCAAAAGAAAACCCAAGTTAGCC
TCTGTTTCATCTATATATATGTAACCTAAGCTTTGTTAATTAGACTAAACTTTTCATTATGTTTAGAAAAAAAATATATTTAAGTGCATTAATATCTATGTTTGTGCATG
TACCACTCTTATATATTTATATAATAAAGAGATGGTTAGCCTTAAAAAAAATAAAATAAAAATAAATAAATAAAGAAATAGATGGTTGCTAGTTGCTACTTTTTTGCCTC
GATCACTGTCACTTAAATCTGTGTGTGTGTGTGTTTTTTAACACTCTATCTTGTATGGAAGCCGG
Protein sequenceShow/hide protein sequence
MANSEDQGWDDMVVEEDDDNDDNEEIGFVEDERRRRSALTGGRGGSGGRTTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQCSRFHAVSEFDD
TKRSCRRRLAGHNERRRKILPDFHGQSSTN