CuGenDBv2

Gene ID	Clc01G24260
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	50S ribosomal protein L34, chloroplastic
Genome location	ClcChr01:34822269..34823165
RNA-Seq Expression	Clc01G24260
Synteny	Clc01G24260
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000271 - Ribosomal protein L34

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0052628.1 50S ribosomal protein L34 [Cucumis melo var. makuwa]

1.6e-55

84.52

Show/hide

Query:  MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAA
        MAAISVLSSPWVS GA AVRVPSASLVISTGSRG CSVSLNTAN TS+RSGLLHC                LSLGLDWSSK+GVGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA

XP_004134668.1 50S ribosomal protein L34, chloroplastic [Cucumis sativus]

1.1e-64

92.26

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Query:  MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAA
        MAAISVLS+PWVSTGA AVRVPSASLV STGSRG CSVSLNT N  S+RSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSK+GVGQGKGR LVVRAGKAA
Subjt:  MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA

XP_008439748.1 PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo]

1.5e-66

94.84

Show/hide

Query:  MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAA
        MAAISVLSSPWVS GA AVRVPSASLVISTGSRG CSVSLNTAN TS+RSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSK+GVGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA

XP_022142342.1 50S ribosomal protein L34, chloroplastic [Momordica charantia]

1.2e-63

91.61

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Query:  MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAA
        MAAISVLS+PWV +GA AVRVPSASLVISTGSR CCSVSLNTAN TS+RSGLL CSFLPSSSLSCSSSFSG SLGLDW+S+I VGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKS PSSGKGA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA

XP_038883793.1 50S ribosomal protein L34, chloroplastic [Benincasa hispida]

1.8e-67

96.13

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Query:  MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAA
        MAAISVLSSPWVSTGATAVRVPSASLVISTG RGCCSVSLNTAN TS+RSGLLHCSFL SSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KI92 Uncharacterized protein

5.3e-65

92.26

Show/hide

Query:  MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAA
        MAAISVLS+PWVSTGA AVRVPSASLV STGSRG CSVSLNT N  S+RSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSK+GVGQGKGR LVVRAGKAA
Subjt:  MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA

A0A1S3AZG6 50S ribosomal protein L34, chloroplastic

7.5e-67

94.84

Show/hide

Query:  MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAA
        MAAISVLSSPWVS GA AVRVPSASLVISTGSRG CSVSLNTAN TS+RSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSK+GVGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA

A0A5A7UBQ8 50S ribosomal protein L34

7.7e-56

84.52

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Query:  MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAA
        MAAISVLSSPWVS GA AVRVPSASLVISTGSRG CSVSLNTAN TS+RSGLLHC                LSLGLDWSSK+GVGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA

A0A5D3CSJ7 50S ribosomal protein L34

7.5e-67

94.84

Show/hide

Query:  MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAA
        MAAISVLSSPWVS GA AVRVPSASLVISTGSRG CSVSLNTAN TS+RSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSK+GVGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA

A0A6J1CMH5 50S ribosomal protein L34, chloroplastic

5.9e-64

91.61

Show/hide

Query:  MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAA
        MAAISVLS+PWV +GA AVRVPSASLVISTGSR CCSVSLNTAN TS+RSGLL CSFLPSSSLSCSSSFSG SLGLDW+S+I VGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKS PSSGKGA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA

SwissProt top hits

e value

%identity

Alignment

P82244 50S ribosomal protein L34, chloroplastic

3.6e-34

65.61

Show/hide

Query:  MAAISVLSSPWVSTGATAV-RVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFL-PSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGK
        MA +S+LS+     GA    R PSASL   TGSR   +    + N  S+RSG LHCSFL PSSSL  SS+FSGLSLGLD +S  GV   + R  VVRAGK
Subjt:  MAAISVLSSPWVSTGATAV-RVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFL-PSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGK

Query:  AALCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        AALC TKR+RSRKSLARTHGFR RM TTSGRA+LKRRRAKGRK+LCTK+NPSSGK A
Subjt:  AALCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA

Q9LP37 50S ribosomal protein L34, chloroplastic

7.0e-30

61.94

Show/hide

Query:  AAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKI-GVGQGKGRSLVVRAGKAA
        +A S L +P  S G   + VPSASL + TG R   S     +  +S+ S LLHCSFL SS +S +S FSGLS+  D SS+  G+   + R LVVRAGKAA
Subjt:  AAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKI-GVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKR+RSRKSLARTHGFRRRMRTTSGRA +KRRRAKGR  LC KSNPSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA

Arabidopsis top hits

e value

%identity

Alignment

AT1G29070.1 Ribosomal protein L34

5.0e-31

61.94

Show/hide

Query:  AAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKI-GVGQGKGRSLVVRAGKAA
        +A S L +P  S G   + VPSASL + TG R   S     +  +S+ S LLHCSFL SS +S +S FSGLS+  D SS+  G+   + R LVVRAGKAA
Subjt:  AAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKI-GVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKR+RSRKSLARTHGFRRRMRTTSGRA +KRRRAKGR  LC KSNPSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA

Sequences

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CDS sequence

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ATGGCAGCGATATCAGTATTATCGTCCCCATGGGTTTCCACCGGAGCAACTGCTGTCCGCGTTCCCTCGGCTTCTCTTGTAATCTCCACCGGTTCTAGAGGTTGCTGCTC
CGTATCCCTGAATACCGCCAACAAAACTTCCTCCCGTTCTGGACTGCTCCATTGTTCATTTCTTCCGTCTTCCTCCCTTTCGTGCTCTTCATCTTTTTCAGGTTTATCTT
TGGGTTTGGATTGGAGCTCTAAGATCGGAGTCGGGCAAGGGAAGGGTAGGAGCCTAGTGGTTAGGGCTGGCAAGGCTGCACTATGTCAGACTAAAAGAAACAGGTCGCGT
AAGTCCTTAGCTCGGACTCACGGTTTTCGCAGACGAATGCGGACCACCAGTGGTAGAGCTGTTCTAAAGCGCAGACGGGCCAAGGGTAGGAAGGTCCTTTGCACAAAATC
CAACCCAAGCAGCGGAAAGGGTGCTTAA

mRNA sequence

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Protein sequence

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MAAISVLSSPWVSTGATAVRVPSASLVISTGSRGCCSVSLNTANKTSSRSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAALCQTKRNRSR
KSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPSSGKGA

Clc01G24260 (gene) of Watermelon (cordophanus) v2 genome