; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G24360 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G24360
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationClcChr01:34881112..34888487
RNA-Seq ExpressionClc01G24360
SyntenyClc01G24360
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013723.1 hypothetical protein SDJN02_23890, partial [Cucurbita argyrosperma subsp. argyrosperma]2.9e-2132.57Show/hide
Query:  MICINVENIVPLTKAASMLSEIGKEVCLKFSPTMFTITTLPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITIHL
        M  + ++   PL  A S+L++I K+  ++F+  M ++          S +  +F A L +    F NYSVD  +SSKVSL SF +A+L G  FSS++IH+
Subjt:  MICINVENIVPLTKAASMLSEIGKEVCLKFSPTMFTITTLPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITIHL

Query:  LEPLNRLLLRFHLQPSESYSAQPLHYHELELFPLEDWKDPARIRLNQ----KHFSIDSQCFKRIIQTFSLYDNQTSSISIISKGTSVTFSILPFAEITLS
        LE   +++LR+    + S +  PLH  EL L P      P    L Q    K F+++S+  ++II+   L+ +    + + +  T V FSI    EIT++
Subjt:  LEPLNRLLLRFHLQPSESYSAQPLHYHELELFPLEDWKDPARIRLNQ----KHFSIDSQCFKRIIQTFSLYDNQTSSISIISKGTSVTFSILPFAEITLS

Query:  EELGQCSFRG-EEEDEVDIKININPASFFISLANQVQRVSFFHKNNDDSHIAIMYFPFGGE
        +E G C   G E EDE ++ I   P  FF++   +  RV F+   N  S I++  F   G+
Subjt:  EELGQCSFRG-EEEDEVDIKININPASFFISLANQVQRVSFFHKNNDDSHIAIMYFPFGGE

XP_008458682.1 PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]1.7e-2135.95Show/hide
Query:  MICINVENIVPLTKAASMLSEIGKEVCLKFSPTMFTITTLPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITIHL
        M  + +E   PL  A S+L+++ K+  +KF+P M  I  + + SP       +F A L L    F N+SVD N SSKVSL+ F +A+L G  FSS+TIHL
Subjt:  MICINVENIVPLTKAASMLSEIGKEVCLKFSPTMFTITTLPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITIHL

Query:  LEPLNRLLLRFHLQPSESYSAQPLHYHELELFPLEDWKDPARIRLNQ----KHFSIDSQCFKRIIQTFSLYDNQTSSISIISKGTSVTFSILPFAEITLS
        L+  N+++LRF    + S+   PLH HEL L P      P    L Q      F++ S+  +RII+   L+   T S+++   G+ V FSI    EI L+
Subjt:  LEPLNRLLLRFHLQPSESYSAQPLHYHELELFPLEDWKDPARIRLNQ----KHFSIDSQCFKRIIQTFSLYDNQTSSISIISKGTSVTFSILPFAEITLS

Query:  EELGQCSFRG-EEEDEVDIKININPASFFISLANQVQRVSFF
        +E G C   G E E E  +++ + P  FF++   +  + S F
Subjt:  EELGQCSFRG-EEEDEVDIKININPASFFISLANQVQRVSFF

XP_022156149.1 uncharacterized protein LOC111023105 [Momordica charantia]1.7e-2134.22Show/hide
Query:  MICINVENIVPLTKAASMLSEIGKEVCLKFSPTMFTITTLPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITIHL
        M  I V NI  L  A S L+EI  EV +K +P +F++          S    +F  +L LP + F  YSV   H+S++S+ +F  ALL      S+TIH+
Subjt:  MICINVENIVPLTKAASMLSEIGKEVCLKFSPTMFTITTLPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITIHL

Query:  LEPLNRLLLRFHLQPSESYSAQPLHYHEL--ELFPLEDWKDPARIRLNQ-KHFSIDSQCFKRIIQTFSLYDNQTSSISIISKGTSVTFSILPFAEITLSE
         + +NR +LRF     E+ S Q    HEL   L P +D  +    +L+  + F I  Q F +II  FS++D++T  + + S  + VTFS  P   +TL +
Subjt:  LEPLNRLLLRFHLQPSESYSAQPLHYHEL--ELFPLEDWKDPARIRLNQ-KHFSIDSQCFKRIIQTFSLYDNQTSSISIISKGTSVTFSILPFAEITLSE

Query:  ELGQCSFRGEEEDEV-DIKININPASFFISLANQVQRVSFFHKNND--------DSHIAIMYF
        E G+C+  G  EDE+    I I P  FF+ +A Q Q+V FF   +         D+++ ++YF
Subjt:  ELGQCSFRGEEEDEV-DIKININPASFFISLANQVQRVSFFHKNND--------DSHIAIMYF

XP_031736681.1 uncharacterized protein LOC116402062 [Cucumis sativus]4.7e-3240.3Show/hide
Query:  MICINVENIVPLTKAASMLSEI-GKEVCLKFSP-TMFTITTLPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITI
        M  I +++I P   A  + +E+   E+CLKF P TM  I     P          F   + LP   F  YSVDRNH S++SL SF +ALL+ + F+++ I
Subjt:  MICINVENIVPLTKAASMLSEI-GKEVCLKFSP-TMFTITTLPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITI

Query:  HLLEPLNRLLLRFHLQPSESYSAQPLHYHELELFPLEDWKDPARIRLNQKHFSIDSQCFKRIIQTFSLYDNQTSSISIISKGTSVTFSILPFAEITLSEE
        HL E  N++LL F  +PS S S  PL+     + P+EDW   A++  + K FSI+SQ F  IIQ FS +  + ++I I S G+ V+FSILPFAE  L+EE
Subjt:  HLLEPLNRLLLRFHLQPSESYSAQPLHYHELELFPLEDWKDPARIRLNQKHFSIDSQCFKRIIQTFSLYDNQTSSISIISKGTSVTFSILPFAEITLSEE

Query:  LGQCSFRGEEEDEVDIKININPASFFISLANQVQRVSFFHKNNDDSHIAIMYFPFGGESHGMV
         G C   G+ E E  I++ + P+SFF +   Q QRV FF   + DS    ++FPF    H +V
Subjt:  LGQCSFRGEEEDEVDIKININPASFFISLANQVQRVSFFHKNNDDSHIAIMYFPFGGESHGMV

XP_031744160.1 uncharacterized protein LOC116404808 [Cucumis sativus]5.3e-2334.65Show/hide
Query:  MICINVENIVPLTKAASMLSEIGKEVCLKFSPTMFTITTLPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITIHL
        M  + ++N  P   A S L+ I +E  +KF+P  F+IT         S    +F A L++  + F NY VD +H+S++SL SF +ALL G    S+TIHL
Subjt:  MICINVENIVPLTKAASMLSEIGKEVCLKFSPTMFTITTLPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITIHL

Query:  LEPLNRLLLRFHLQPSESYSAQPLHYHELELFPLEDWKDPARIRLNQKHFSIDSQCFKRIIQTFSLYDNQTSSISIISKGTSVTFSILPFAEITLSEELG
        L  +N+++LRF     ES S  P   HEL L P ++ +D   I    K FSIDS+  +R+I+   ++     SI + +  + V FSI    EI L++E  
Subjt:  LEPLNRLLLRFHLQPSESYSAQPLHYHELELFPLEDWKDPARIRLNQKHFSIDSQCFKRIIQTFSLYDNQTSSISIISKGTSVTFSILPFAEITLSEELG

Query:  QCSFRG-EEEDEVDIKININPASFFISLANQVQRVSFFHKNNDDSHIAIMYFPF
        +C   G E E+E  + IN+NP  FF++  +   RV F+        + +  F F
Subjt:  QCSFRG-EEEDEVDIKININPASFFISLANQVQRVSFFHKNNDDSHIAIMYFPF

TrEMBL top hitse value%identityAlignment
A0A1S3C8J1 uncharacterized protein LOC1034980108.2e-2235.95Show/hide
Query:  MICINVENIVPLTKAASMLSEIGKEVCLKFSPTMFTITTLPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITIHL
        M  + +E   PL  A S+L+++ K+  +KF+P M  I  + + SP       +F A L L    F N+SVD N SSKVSL+ F +A+L G  FSS+TIHL
Subjt:  MICINVENIVPLTKAASMLSEIGKEVCLKFSPTMFTITTLPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITIHL

Query:  LEPLNRLLLRFHLQPSESYSAQPLHYHELELFPLEDWKDPARIRLNQ----KHFSIDSQCFKRIIQTFSLYDNQTSSISIISKGTSVTFSILPFAEITLS
        L+  N+++LRF    + S+   PLH HEL L P      P    L Q      F++ S+  +RII+   L+   T S+++   G+ V FSI    EI L+
Subjt:  LEPLNRLLLRFHLQPSESYSAQPLHYHELELFPLEDWKDPARIRLNQ----KHFSIDSQCFKRIIQTFSLYDNQTSSISIISKGTSVTFSILPFAEITLS

Query:  EELGQCSFRG-EEEDEVDIKININPASFFISLANQVQRVSFF
        +E G C   G E E E  +++ + P  FF++   +  + S F
Subjt:  EELGQCSFRG-EEEDEVDIKININPASFFISLANQVQRVSFF

A0A1S3CL88 uncharacterized protein LOC1035022504.1e-2135.45Show/hide
Query:  MICINVENIVPLTKAASMLSEIG-KEVCLKFSPTMFTITTLPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITIH
        M  + ++N  PL  A S L++I      LKF+P+ F I          S    +F A L L    F  +SVD +HSSKVSL SF +A+L G  F+S+TIH
Subjt:  MICINVENIVPLTKAASMLSEIG-KEVCLKFSPTMFTITTLPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITIH

Query:  LLEPLNRLLLRFHLQPSESYSAQPLHYHELELFP--LEDWKDPARIRLNQKHFSIDSQCFKRIIQTFSLYDNQTSSISIISKGTSVTFSILPFAEITLSE
        LL+  N+++LRF    SE    QPLH HEL L P   ED +        +K+F + S+  +RII+   ++ N  S IS+    + V FSI    EI L+E
Subjt:  LLEPLNRLLLRFHLQPSESYSAQPLHYHELELFP--LEDWKDPARIRLNQKHFSIDSQCFKRIIQTFSLYDNQTSSISIISKGTSVTFSILPFAEITLSE

Query:  ELGQCSFRG-EEEDEVDIKININPASFFISLANQVQRVSFFHKNNDDSHIA-----------IMYFPF
            C   G EEE E   +I + P  FF++   +  RV F+   N+   +            ++YFPF
Subjt:  ELGQCSFRG-EEEDEVDIKININPASFFISLANQVQRVSFFHKNNDDSHIA-----------IMYFPF

A0A6J1DSH6 uncharacterized protein LOC1110231058.2e-2234.22Show/hide
Query:  MICINVENIVPLTKAASMLSEIGKEVCLKFSPTMFTITTLPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITIHL
        M  I V NI  L  A S L+EI  EV +K +P +F++          S    +F  +L LP + F  YSV   H+S++S+ +F  ALL      S+TIH+
Subjt:  MICINVENIVPLTKAASMLSEIGKEVCLKFSPTMFTITTLPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITIHL

Query:  LEPLNRLLLRFHLQPSESYSAQPLHYHEL--ELFPLEDWKDPARIRLNQ-KHFSIDSQCFKRIIQTFSLYDNQTSSISIISKGTSVTFSILPFAEITLSE
         + +NR +LRF     E+ S Q    HEL   L P +D  +    +L+  + F I  Q F +II  FS++D++T  + + S  + VTFS  P   +TL +
Subjt:  LEPLNRLLLRFHLQPSESYSAQPLHYHEL--ELFPLEDWKDPARIRLNQ-KHFSIDSQCFKRIIQTFSLYDNQTSSISIISKGTSVTFSILPFAEITLSE

Query:  ELGQCSFRGEEEDEV-DIKININPASFFISLANQVQRVSFFHKNND--------DSHIAIMYF
        E G+C+  G  EDE+    I I P  FF+ +A Q Q+V FF   +         D+++ ++YF
Subjt:  ELGQCSFRGEEEDEV-DIKININPASFFISLANQVQRVSFFHKNND--------DSHIAIMYF

A0A6J1H2Z8 uncharacterized protein LOC1114600111.5e-2034.38Show/hide
Query:  MICINVENIVPLTKAASMLSEIGKEVCLKFSPTMFT-ITTLPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITIH
        M  + + +  PL +A S+L++I  E  LKFS + F+ IT+ PS         H+F A   +    FANY VDRNHSS+VSL+SF NA+  G  FSS+TIH
Subjt:  MICINVENIVPLTKAASMLSEIGKEVCLKFSPTMFT-ITTLPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITIH

Query:  LLEPLNRLLLRFHLQPSESYSAQPLHYHELELFPLEDWKDPARIRLNQKHFSIDSQCFKRIIQTFSLYDNQTSSISIISKGTSVTFSILPFAEITLSEEL
          E  +R++L+F    S +++   +H   L+L P ++ ++  +I+ + + FSI SQ F+ II     + N +  +S+ S      ++     E  L++E 
Subjt:  LLEPLNRLLLRFHLQPSESYSAQPLHYHELELFPLEDWKDPARIRLNQKHFSIDSQCFKRIIQTFSLYDNQTSSISIISKGTSVTFSILPFAEITLSEEL

Query:  GQCSFRG-EEEDEVDIKININPASFFISLANQVQRVSFFHKNNDDSHIAIMYFPFG
        G+C   G E + E+  +IN+NP  FF +L+    R+ F+     DS   I    FG
Subjt:  GQCSFRG-EEEDEVDIKININPASFFISLANQVQRVSFFHKNNDDSHIAIMYFPFG

A0A6J1KZ05 uncharacterized protein LOC1114988874.5e-2035.16Show/hide
Query:  MICINVENIVPLTKAASMLSEIGKEVCLKFSPTMFT-ITTLPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITIH
        M  + + +  PL +A S+L++I  E  LKFS + F+ IT+ PS          +F A   +    FANYSVDRNHSS+VSL+SF +A+  G  FSS+TIH
Subjt:  MICINVENIVPLTKAASMLSEIGKEVCLKFSPTMFT-ITTLPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITIH

Query:  LLEPLNRLLLRFHLQPSESYSAQPLHYHELELFPLEDWKDPARIRLNQKHFSIDSQCFKRIIQTFSLYDNQTSSISIISKGTSVTFSILPFAEITLSEEL
          E  +R++L+F    S +++   +H   L+L P ++ ++  +I+ + + FSI SQ F+ II     + N +  +S+ S  + V F      E  L++E 
Subjt:  LLEPLNRLLLRFHLQPSESYSAQPLHYHELELFPLEDWKDPARIRLNQKHFSIDSQCFKRIIQTFSLYDNQTSSISIISKGTSVTFSILPFAEITLSEEL

Query:  GQCSFRG-EEEDEVDIKININPASFFISLANQVQRVSFFHKNNDDSHIAIMYFPFG
        G+C+  G E E E+  +IN+NP  FF +L+    R+ F+     DS   I    FG
Subjt:  GQCSFRG-EEEDEVDIKININPASFFISLANQVQRVSFFHKNNDDSHIAIMYFPFG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTGTATCAATGTTGAGAACATTGTTCCTTTAACGAAGGCAGCCTCCATGTTGAGTGAGATTGGTAAGGAAGTATGCCTCAAATTTTCACCCACCATGTTCACCAT
AACTACTCTTCCATCTCCATCTCCATCTCCATCTCCATCTCCTCACAAATTCTCAGCAATCCTAATTTTGCCAAGCTCCTCATTCGCCAACTATTCCGTCGATCGCAATC
ACAGTTCAAAGGTTTCCCTCCGATCCTTCCAGAATGCTTTATTGCAAGGCCGGAGGTTTTCTTCAATCACCATCCATCTTCTCGAACCCCTAAATCGCTTACTCCTTAGA
TTTCACCTTCAGCCTTCAGAGTCTTATTCGGCACAACCATTGCATTATCATGAATTGGAATTATTTCCTTTGGAAGATTGGAAAGATCCTGCCCGAATTAGGTTAAATCA
AAAGCATTTTTCAATTGATTCACAATGCTTCAAACGTATTATTCAAACATTCTCTCTCTACGATAATCAAACTTCTTCAATTTCTATTATTTCAAAGGGTACTTCTGTCA
CCTTCTCCATTTTGCCATTTGCGGAGATTACTCTTAGTGAAGAGTTGGGACAATGCTCCTTCCGAGGCGAGGAAGAAGATGAAGTTGATATAAAAATCAACATCAATCCC
GCTTCGTTTTTTATTAGTTTGGCAAATCAAGTACAAAGGGTATCATTCTTCCACAAAAATAATGATGATTCTCATATTGCAATAATGTATTTCCCTTTTGGAGGGGAATC
TCATGGAATGGTTCATGGGATGCAAGACAGTGGGAAGAGTTTTGGAGAAGAACCTCAATTTTGTTACACTGCAGCCAGCGGACGAGAAAGAGATTGTCAAATAAGAGATT
GTGTAAGGTAA
mRNA sequenceShow/hide mRNA sequence
TTTGGATTGGGAAGCAGAGAAATTAAAGCACCATGATTTGTATCAATGTTGAGAACATTGTTCCTTTAACGAAGGCAGCCTCCATGTTGAGTGAGATTGGTAAGGAAGTA
TGCCTCAAATTTTCACCCACCATGTTCACCATAACTACTCTTCCATCTCCATCTCCATCTCCATCTCCATCTCCTCACAAATTCTCAGCAATCCTAATTTTGCCAAGCTC
CTCATTCGCCAACTATTCCGTCGATCGCAATCACAGTTCAAAGGTTTCCCTCCGATCCTTCCAGAATGCTTTATTGCAAGGCCGGAGGTTTTCTTCAATCACCATCCATC
TTCTCGAACCCCTAAATCGCTTACTCCTTAGATTTCACCTTCAGCCTTCAGAGTCTTATTCGGCACAACCATTGCATTATCATGAATTGGAATTATTTCCTTTGGAAGAT
TGGAAAGATCCTGCCCGAATTAGGTTAAATCAAAAGCATTTTTCAATTGATTCACAATGCTTCAAACGTATTATTCAAACATTCTCTCTCTACGATAATCAAACTTCTTC
AATTTCTATTATTTCAAAGGGTACTTCTGTCACCTTCTCCATTTTGCCATTTGCGGAGATTACTCTTAGTGAAGAGTTGGGACAATGCTCCTTCCGAGGCGAGGAAGAAG
ATGAAGTTGATATAAAAATCAACATCAATCCCGCTTCGTTTTTTATTAGTTTGGCAAATCAAGTACAAAGGGTATCATTCTTCCACAAAAATAATGATGATTCTCATATT
GCAATAATGTATTTCCCTTTTGGAGGGGAATCTCATGGAATGGTTCATGGGATGCAAGACAGTGGGAAGAGTTTTGGAGAAGAACCTCAATTTTGTTACACTGCAGCCAG
CGGACGAGAAAGAGATTGTCAAATAAGAGATTGTGTAAGGTAAAGTAAAATTGTTG
Protein sequenceShow/hide protein sequence
MICINVENIVPLTKAASMLSEIGKEVCLKFSPTMFTITTLPSPSPSPSPSPHKFSAILILPSSSFANYSVDRNHSSKVSLRSFQNALLQGRRFSSITIHLLEPLNRLLLR
FHLQPSESYSAQPLHYHELELFPLEDWKDPARIRLNQKHFSIDSQCFKRIIQTFSLYDNQTSSISIISKGTSVTFSILPFAEITLSEELGQCSFRGEEEDEVDIKININP
ASFFISLANQVQRVSFFHKNNDDSHIAIMYFPFGGESHGMVHGMQDSGKSFGEEPQFCYTAASGRERDCQIRDCVR