; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G24460 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G24460
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTranscription factor bHLH35-like protein
Genome locationClcChr01:34979330..34980537
RNA-Seq ExpressionClc01G24460
SyntenyClc01G24460
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052608.1 uncharacterized protein E6C27_scaffold120G002160 [Cucumis melo var. makuwa]2.0e-7587.93Show/hide
Query:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDRL
        MVSTLQKRFDSRNKLRL RSL TYESSGRQ CVFWNAVLFIHKLKLKLEAIEREYSNLL MK EYLNSIKQFHS KEVKVEKNGEEFRVKV+CEKGGDRL
Subjt:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDRL

Query:  VSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAED-DQLINVSDITEAINVAIDGKLSAANQHHKDNPQNDAEI
        VSVLEAFEKMGLNV+EARVSCTECFCMEAIAVAED  QL+N+SDIT+AINVAID KL A NQHH D P NDA++
Subjt:  VSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAED-DQLINVSDITEAINVAIDGKLSAANQHHKDNPQNDAEI

XP_004134653.1 uncharacterized protein LOC101213083 [Cucumis sativus]5.9e-7588Show/hide
Query:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDRL
        MVSTLQKRFDSRNKLRL RSL TYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLL MK EYLNSIKQFHS KEVKVEKNGEEFRVKV+CEKGGDRL
Subjt:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDRL

Query:  VSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAED-DQLINVSDITEAINVAIDGKLSAANQHHKDN-PQNDAEI
        VSVLEAFEKMGLNV+EARVSCTECFCMEA AVAED  QL+N+SDITEAINVAID KL A NQHH D+ P NDA++
Subjt:  VSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAED-DQLINVSDITEAINVAIDGKLSAANQHHKDN-PQNDAEI

XP_008439723.1 PREDICTED: uncharacterized protein LOC103484437 [Cucumis melo]2.0e-7587.93Show/hide
Query:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDRL
        MVSTLQKRFDSRNKLRL RSL TYESSGRQ CVFWNAVLFIHKLKLKLEAIEREYSNLL MK EYLNSIKQFHS KEVKVEKNGEEFRVKV+CEKGGDRL
Subjt:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDRL

Query:  VSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAED-DQLINVSDITEAINVAIDGKLSAANQHHKDNPQNDAEI
        VSVLEAFEKMGLNV+EARVSCTECFCMEAIAVAED  QL+N+SDIT+AINVAID KL A NQHH D P NDA++
Subjt:  VSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAED-DQLINVSDITEAINVAIDGKLSAANQHHKDNPQNDAEI

XP_023544520.1 uncharacterized protein LOC111804071 [Cucurbita pepo subsp. pepo]2.0e-6778.03Show/hide
Query:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDRL
        MVST QKRFDSR KLRL RSL TY+SSG+Q   FWNAVLF+HKLKLKLEAIEREYSNLL+MK EYLNS+KQ H+PKEVKVEK GEEFRVKV+CEKGGDRL
Subjt:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDRL

Query:  VSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAEDDQLINVSDITEAINVAIDGKLSAANQHHKDNPQNDAEI
        V+VLEAF+KMGLNVL+A+VSC+ECF MEAIAVAED+Q +N+SDITEAIN AI+GK  AANQ  K+ P+ D EI
Subjt:  VSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAEDDQLINVSDITEAINVAIDGKLSAANQHHKDNPQNDAEI

XP_038893157.1 uncharacterized protein LOC120082020 [Benincasa hispida]4.7e-8090.75Show/hide
Query:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDRL
        MVSTLQKRFDSRNKLRL RSLATYESS +QRC+FWNAVLFIHKLKLKLEAIEREYSNLLAMK EYLNSIKQFHSPKEVKVEKNGEEF+VKV+CEKGGDRL
Subjt:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDRL

Query:  VSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAEDDQLINVSDITEAINVAIDGKLSAANQHHKDNPQNDAEI
        VSVLEAFEKMGLNV+EARVSCTECFCMEAIAVAE+ +L+NVSDITEAINVAIDGKL A NQHHKD P+NDAEI
Subjt:  VSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAEDDQLINVSDITEAINVAIDGKLSAANQHHKDNPQNDAEI

TrEMBL top hitse value%identityAlignment
A0A0A0KHW9 Uncharacterized protein2.9e-7588Show/hide
Query:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDRL
        MVSTLQKRFDSRNKLRL RSL TYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLL MK EYLNSIKQFHS KEVKVEKNGEEFRVKV+CEKGGDRL
Subjt:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDRL

Query:  VSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAED-DQLINVSDITEAINVAIDGKLSAANQHHKDN-PQNDAEI
        VSVLEAFEKMGLNV+EARVSCTECFCMEA AVAED  QL+N+SDITEAINVAID KL A NQHH D+ P NDA++
Subjt:  VSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAED-DQLINVSDITEAINVAIDGKLSAANQHHKDN-PQNDAEI

A0A1S3B049 uncharacterized protein LOC1034844379.8e-7687.93Show/hide
Query:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDRL
        MVSTLQKRFDSRNKLRL RSL TYESSGRQ CVFWNAVLFIHKLKLKLEAIEREYSNLL MK EYLNSIKQFHS KEVKVEKNGEEFRVKV+CEKGGDRL
Subjt:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDRL

Query:  VSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAED-DQLINVSDITEAINVAIDGKLSAANQHHKDNPQNDAEI
        VSVLEAFEKMGLNV+EARVSCTECFCMEAIAVAED  QL+N+SDIT+AINVAID KL A NQHH D P NDA++
Subjt:  VSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAED-DQLINVSDITEAINVAIDGKLSAANQHHKDNPQNDAEI

A0A5A7UBN8 Uncharacterized protein9.8e-7687.93Show/hide
Query:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDRL
        MVSTLQKRFDSRNKLRL RSL TYESSGRQ CVFWNAVLFIHKLKLKLEAIEREYSNLL MK EYLNSIKQFHS KEVKVEKNGEEFRVKV+CEKGGDRL
Subjt:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDRL

Query:  VSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAED-DQLINVSDITEAINVAIDGKLSAANQHHKDNPQNDAEI
        VSVLEAFEKMGLNV+EARVSCTECFCMEAIAVAED  QL+N+SDIT+AINVAID KL A NQHH D P NDA++
Subjt:  VSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAED-DQLINVSDITEAINVAIDGKLSAANQHHKDNPQNDAEI

A0A6J1IR65 uncharacterized protein LOC1114786311.3e-6778.03Show/hide
Query:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDRL
        MVST QKRFDSR KLRL RSL TY+SSG+Q   FWNAVLF+HKLKLKLEAIEREYSNLL+MK EYLNS+KQ H+PKEVKVEK GEEFRVKV+CEKGGDRL
Subjt:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDRL

Query:  VSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAEDDQLINVSDITEAINVAIDGKLSAANQHHKDNPQNDAEI
        V+VLEAF+KMGLNVL+A+VSC+ECF MEAIAVAED+Q +N+ DITEAIN AIDGK  AANQ  K+ P+ D EI
Subjt:  VSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAEDDQLINVSDITEAINVAIDGKLSAANQHHKDNPQNDAEI

E5GC31 Uncharacterized protein9.8e-7687.93Show/hide
Query:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDRL
        MVSTLQKRFDSRNKLRL RSL TYESSGRQ CVFWNAVLFIHKLKLKLEAIEREYSNLL MK EYLNSIKQFHS KEVKVEKNGEEFRVKV+CEKGGDRL
Subjt:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDRL

Query:  VSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAED-DQLINVSDITEAINVAIDGKLSAANQHHKDNPQNDAEI
        VSVLEAFEKMGLNV+EARVSCTECFCMEAIAVAED  QL+N+SDIT+AINVAID KL A NQHH D P NDA++
Subjt:  VSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAED-DQLINVSDITEAINVAIDGKLSAANQHHKDNPQNDAEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G29270.1 unknown protein7.3e-2342.86Show/hide
Query:  MVSTLQKRFDSRNKLRLARSLATYE-SSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDR
        MV++ QK+  S+ K    ++L  ++ S   Q  V   A+L+I  LKL++EA++REY +L   K E L      H  +EVKVEK GE F+VK+K  +G + 
Subjt:  MVSTLQKRFDSRNKLRLARSLATYE-SSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDR

Query:  LVSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAED-DQLINVSDITEAINVAI
        LV++LEAFE+MGLNV +AR SC + F MEAI   +  D+L +V D+T+ +  A+
Subjt:  LVSVLEAFEKMGLNVLEARVSCTECFCMEAIAVAED-DQLINVSDITEAINVAI

AT2G40435.1 BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1)1.6e-0934.42Show/hide
Query:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKG-GDR
        MVS  QKR   + K +L RS+ T   +     +  +A  +I KLK K+E   ++ +       E  +S         V VE   + F + V   K     
Subjt:  MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKG-GDR

Query:  LVSVLEAFEKMGLNVLEARVSCTECFCMEAIAVA-EDDQLINVSDITEAINVAI
        LVSVLEAFE +GLNVLEAR SCT+ F + A+ +  ED + ++   + +A+  AI
Subjt:  LVSVLEAFEKMGLNVLEARVSCTECFCMEAIAVA-EDDQLINVSDITEAINVAI

AT3G56220.1 transcription regulators1.7e-0835.03Show/hide
Query:  MVSTLQKRFDS-RNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKE-VKVEKNGEEFRVKVKCEKG-G
        MVS   KR  S R K  L RS+ T   +  +  +  +A  +I KLK K+E I           T    S ++   P   V VE   + F +KV   K   
Subjt:  MVSTLQKRFDS-RNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKE-VKVEKNGEEFRVKVKCEKG-G

Query:  DRLVSVLEAFEKMGLNVLEARVSCTECFCMEAIAVA--EDDQLINVSDITEAINVAI
          LV VLE FE +GL+V+EARVSCT+ F + AI  +  +D   I+   + +A+  AI
Subjt:  DRLVSVLEAFEKMGLNVLEARVSCTECFCMEAIAVA--EDDQLINVSDITEAINVAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCTACACTACAAAAGAGATTCGACTCACGCAACAAGCTACGCCTTGCTCGATCTCTGGCCACCTATGAATCCTCCGGAAGACAAAGGTGTGTGTTCTGGAATGC
TGTTCTCTTCATTCATAAGCTTAAACTCAAGCTGGAAGCAATTGAGAGAGAGTATTCAAATCTATTGGCCATGAAAACAGAATACTTGAACTCAATAAAGCAATTTCATT
CCCCCAAGGAAGTGAAAGTTGAGAAGAACGGAGAGGAGTTTAGAGTGAAAGTGAAATGTGAAAAGGGAGGGGACAGATTGGTTTCAGTATTAGAGGCATTTGAGAAAATG
GGTCTAAATGTTTTGGAAGCTAGAGTTTCATGTACTGAATGTTTTTGTATGGAGGCCATTGCTGTAGCCGAAGATGATCAATTGATTAATGTCAGTGATATTACTGAAGC
TATTAATGTAGCCATTGATGGCAAATTATCAGCTGCAAATCAGCATCACAAAGACAATCCTCAGAATGATGCTGAAATTTAG
mRNA sequenceShow/hide mRNA sequence
TTCCTCTGTTTTTAAATTCACATGAGAACAAGAGGGAAAGTAGCTGAGTGATTGTTTCAATTTCGCCTTTAAAAACACATATACAGAGCAACTTTTTTATGCTATAAAAA
GCCAGACCCTTCATTTCAGGTCCTATTCTTCACTAACTTTTCTTAATTTGGAGAGCAAGTTGAAGCTGAGAGACAAACAGAGAGACAGAAATGGTTTCTACACTACAAAA
GAGATTCGACTCACGCAACAAGCTACGCCTTGCTCGATCTCTGGCCACCTATGAATCCTCCGGAAGACAAAGGTGTGTGTTCTGGAATGCTGTTCTCTTCATTCATAAGC
TTAAACTCAAGCTGGAAGCAATTGAGAGAGAGTATTCAAATCTATTGGCCATGAAAACAGAATACTTGAACTCAATAAAGCAATTTCATTCCCCCAAGGAAGTGAAAGTT
GAGAAGAACGGAGAGGAGTTTAGAGTGAAAGTGAAATGTGAAAAGGGAGGGGACAGATTGGTTTCAGTATTAGAGGCATTTGAGAAAATGGGTCTAAATGTTTTGGAAGC
TAGAGTTTCATGTACTGAATGTTTTTGTATGGAGGCCATTGCTGTAGCCGAAGATGATCAATTGATTAATGTCAGTGATATTACTGAAGCTATTAATGTAGCCATTGATG
GCAAATTATCAGCTGCAAATCAGCATCACAAAGACAATCCTCAGAATGATGCTGAAATTTAGCCACTTCCTAACCTATGAATTCAATGAAAATGTTTCTTGCTATTCCAT
TCTCTTGTATTTTTCTTTCTAATTCAAATTGGAAAAGGAATAACAAAAACAAGGCGGATTTGGCAGTTCTTAAGAATGAAACAAAACCTATTTTTGTGGAGAGGAAGAGG
TTGAAACTGAAACAGCTAGTAAATATGGTGGCGCATATTAAATTGGATTCTAAATTTGCATTATTATATGTTGAAATAACAATAAAATATTAAAATTGCACTGATCCAC
Protein sequenceShow/hide protein sequence
MVSTLQKRFDSRNKLRLARSLATYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLAMKTEYLNSIKQFHSPKEVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKM
GLNVLEARVSCTECFCMEAIAVAEDDQLINVSDITEAINVAIDGKLSAANQHHKDNPQNDAEI