CuGenDBv2

Gene ID	Clc01G24690
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	cyclic phosphodiesterase-like
Genome location	ClcChr01:35090383..35092717
RNA-Seq Expression	Clc01G24690
Synteny	Clc01G24690
Gene Ontology terms	GO:0009187 - cyclic nucleotide metabolic process (biological process) GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity (molecular function)
InterPro domains	IPR009097 - Cyclic phosphodiesterase IPR012386 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6581386.1 Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. sororia]

8.8e-96

89.58

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Query:  MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
        MANPES PIQPSEGEKNVYSVWALPPEDVTARI+ LMNSL SEFGGPQFEPHITVVGAIRLT DDALNKFRSAC+GLKAYQATVD VSTGTFFYQCVFLL
Subjt:  MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL

Query:  IHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSS
        IHPTT+VVETSSHCC HFGY NSTPYMPH+SLLYANISDE+KKQAK++A+KLDEA+NGL FPITRLALYKTDT D+TLKSWEKIAE DLPSS
Subjt:  IHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSS

XP_022978766.1 cyclic phosphodiesterase-like [Cucurbita maxima]

2.6e-95

89.06

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Query:  MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
        MANPES  IQPSEGEKNVYSVWALPPEDVTARI+ LMNSL SEFGGPQFEPHITVVGAIRLT DDALNKFRSAC+GLKAYQATVD VSTGTFFYQCVFLL
Subjt:  MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL

Query:  IHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSS
        IHPTT+VVETSSHCC HFGYKNSTPYMPH+SLLYANISDE+KKQAK++A+KLDEA+NGL FP+TRLALYKTDT D+TLKSWEKIAE DLPSS
Subjt:  IHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSS

XP_023522563.1 cyclic phosphodiesterase-like [Cucurbita pepo subsp. pepo]

3.9e-96

90.1

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Query:  MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
        MANPES PIQPSEGEKNVYSVWALPPEDVTARI+ LMNSL SEFGGPQFEPHITVVGAIRLT DDALNKFRSAC+GLKAYQATVD VSTGTFFYQCVFLL
Subjt:  MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL

Query:  IHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSS
        IHPT EVVETSSHCC HFGYKNSTPYMPH+SLLYANISDE+KKQAK++A+KLDEA+NGL FPITRLALYKTDT D+TLKSWEKIAE DLPSS
Subjt:  IHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSS

XP_023543945.1 cyclic phosphodiesterase-like isoform X2 [Cucurbita pepo subsp. pepo]

1.8e-96

90.1

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Query:  MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
        MANPES PIQPSEGEKNVYSVWALPPEDVTARI+ LMNSL SEFGGPQFEPHITVVGAIRLT DDALNKFRSAC+GLKAYQATVD VSTGTFFYQCVFLL
Subjt:  MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL

Query:  IHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSS
        IHPTT+VVETSSHCC HFGYKNSTPYMPH+SLLYANISDE+KKQAK++A+KLDEA+NGL FPITRLALYKTDT D+TLKSWEKIAE DLPSS
Subjt:  IHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSS

XP_038882567.1 cyclic phosphodiesterase-like [Benincasa hispida]

6.9e-101

95.31

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Query:  MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
        MANPESA IQPSE E NVYSVWALPPEDVTARIKNLMNSL SEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
Subjt:  MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL

Query:  IHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSS
        IH TTEVVETSSHCC HFGYKNSTPYMPHMSLLYANISDEKKKQAK IADKLDEAVNGLKFPITRLALYKTDTED+TLKSWEKIAEH+LPSS
Subjt:  IHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KLS9 Uncharacterized protein

1.8e-86

82.29

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Query:  MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
        M NPESA IQ  E E +VYSVWALPPEDV+ARI+NLM SL SEFGGP FEPHITVVGAIRLT +DAL KFR+ACQG+KAYQATVDHV+TGTFFYQCVFLL
Subjt:  MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL

Query:  IHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSS
        IHPTTEVVETSSH C HF +K+STPYMPHMSLLY++ISDEK+KQAK+IADKLDEAVNGL+FPITRLAL KTDT D+TLKSW+KI EHDL SS
Subjt:  IHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSS

A0A1S3AYZ1 cyclic phosphodiesterase-like

9.8e-93

88.02

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Query:  MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
        M NPESA IQ SE E NVYSVWALPPEDV+ARI+NLMNSL SEFGGPQFEPHITVVGAIRLT +DALNKF +ACQG+KAYQATVDHVSTGTFFYQCVFLL
Subjt:  MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL

Query:  IHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSS
        IHPTTEVVETSSH C HFG+KNSTPYMPHMSLLYA+ISDEKKKQAK+IADKLDEAVNGLKFPITRLAL+KTDT D+TLKSWEKI EHDL SS
Subjt:  IHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSS

A0A6J1EEQ8 cyclic phosphodiesterase-like

1.6e-87

82.81

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Query:  MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
        MANP SAPI+P EGE  +YSVWALPPEDV  +I +LM+SL SEFGGP+FEPHITVVGAIRLTP DALNKFRSAC+G+KAYQATVD VS GT FYQCVFLL
Subjt:  MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL

Query:  IHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSS
        IHPTTEVV+ SSHCC HFGY NSTPYMPH+SLLYANISDE KK+AK+IADKL+EAVNGLK P+TRLALYKTDT D+TLKSWEKIAEHDLPSS
Subjt:  IHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSS

A0A6J1EGC1 cyclic phosphodiesterase-like

3.0e-94

89.06

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Query:  MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
        MANPES PIQPSEGEKNVYSVWALPPEDV ARI+ LMNSL SEFGGPQFEPHITVVGAIRLT DDALNKFRSAC+GLKAYQATVD VSTGTFFYQCVFLL
Subjt:  MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL

Query:  IHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSS
        IHPTT+VVETSSHCC HFGYKN TPYMPH+SLLYANISDE+KKQAK++A+KLDEA+NGL FPITRLALYKTDT D+TLKSWEKIAE DLPSS
Subjt:  IHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSS

A0A6J1INY2 cyclic phosphodiesterase-like

1.2e-95

89.06

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Query:  MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
        MANPES  IQPSEGEKNVYSVWALPPEDVTARI+ LMNSL SEFGGPQFEPHITVVGAIRLT DDALNKFRSAC+GLKAYQATVD VSTGTFFYQCVFLL
Subjt:  MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL

Query:  IHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSS
        IHPTT+VVETSSHCC HFGYKNSTPYMPH+SLLYANISDE+KKQAK++A+KLDEA+NGL FP+TRLALYKTDT D+TLKSWEKIAE DLPSS
Subjt:  IHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSS

SwissProt top hits

e value

%identity

Alignment

O04147 Cyclic phosphodiesterase

8.6e-54

57.8

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Query:  EGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSS
        E +K+VYSVWALP E+   R K LM +L SEF GP+F PH+TV  +  LT D+A   F SAC GLKAY ATVD VSTGTFF+QCVFLL+  T EV+E   
Subjt:  EGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSS

Query:  HCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIA
        HC  HF    +TPYMPH+SLLYA +++E+KK A++ A  LD +++GL F + RLAL KTDTED+TL++WE +A
Subjt:  HCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIA

Arabidopsis top hits

e value

%identity

Alignment

AT4G18930.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein

6.1e-55

57.8

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Query:  EGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSS
        E +K+VYSVWALP E+   R K LM +L SEF GP+F PH+TV  +  LT D+A   F SAC GLKAY ATVD VSTGTFF+QCVFLL+  T EV+E   
Subjt:  EGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSS

Query:  HCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIA
        HC  HF    +TPYMPH+SLLYA +++E+KK A++ A  LD +++GL F + RLAL KTDTED+TL++WE +A
Subjt:  HCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIA

AT4G18940.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein

9.2e-43

42.71

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Query:  MANPESAPIQP------SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAI--RLTPDDALNKFRSACQGLKAYQATVDHVSTGTF
        M    + P+QP       E EK +Y++WA+P +DV  R++ LM  L SEFGGP F+PH+T+VG    +LT  +A   F+SAC+G K Y ATVD VS GT 
Subjt:  MANPESAPIQP------SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAI--RLTPDDALNKFRSACQGLKAYQATVDHVSTGTF

Query:  FYQCVFLLIHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPS
        ++QC+++ +  T EV+  + H  AHF       Y+PHMS+LY ++++ +KK+A + A  LD +++GL F I R+AL+ TD +   + SW K+ EH L S
Subjt:  FYQCVFLLIHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPS

Sequences

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CDS sequence

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ATGGCGAACCCAGAATCCGCCCCTATCCAACCCTCTGAAGGGGAAAAGAACGTGTATTCTGTGTGGGCTCTTCCTCCGGAAGATGTGACGGCCAGAATCAAGAACCTCAT
GAACAGCCTCATATCCGAGTTCGGCGGTCCCCAATTCGAGCCACATATCACCGTTGTTGGGGCAATCCGTCTCACCCCTGACGATGCCCTCAACAAATTCCGCTCCGCTT
GCCAGGGGCTCAAGGCTTATCAAGCCACCGTCGATCATGTATCTACCGGAACCTTCTTCTACCAGTGTGTTTTTCTCCTTATTCATCCTACCACTGAGGTGGTGGAGACT
AGTTCACATTGCTGTGCACATTTTGGTTACAAAAACTCTACCCCTTACATGCCGCATATGAGCCTACTGTATGCCAACATATCAGATGAAAAAAAGAAGCAAGCAAAAGA
TATAGCAGACAAGCTTGATGAAGCCGTGAATGGCCTGAAGTTCCCAATCACTCGACTTGCACTGTACAAAACAGACACTGAGGATCAAACTCTAAAGTCCTGGGAGAAAA
TTGCAGAACACGATCTTCCTTCAAGTTAG

mRNA sequence

Show/hide mRNA sequence

CGACCTCCGAAGTCAGAAATAAAAAAATGCGCATATTCTTATAATAAACATTGATTCCCATATCCGTATGCATTGGCGGTGGGAATAGGATCAAGTTCTCAGCCCACATG
ACCGTATATTCTACGACCAACTCAACATTTATCCTTCCGAAACGACATGTCGGCAGATTACCTTCCCCCTTTCTCAATTTCCCTGTAACAACTGTAACTGCATCTCTCCG
CTCAATACGATCGTCATCAAAACCAATTTCGATCTTCTTCCCTTCTCCGCTTCAATGGCGAACCCAGAATCCGCCCCTATCCAACCCTCTGAAGGGGAAAAGAACGTGTA
TTCTGTGTGGGCTCTTCCTCCGGAAGATGTGACGGCCAGAATCAAGAACCTCATGAACAGCCTCATATCCGAGTTCGGCGGTCCCCAATTCGAGCCACATATCACCGTTG
TTGGGGCAATCCGTCTCACCCCTGACGATGCCCTCAACAAATTCCGCTCCGCTTGCCAGGGGCTCAAGGCTTATCAAGCCACCGTCGATCATGTATCTACCGGAACCTTC
TTCTACCAGTGTGTTTTTCTCCTTATTCATCCTACCACTGAGGTGGTGGAGACTAGTTCACATTGCTGTGCACATTTTGGTTACAAAAACTCTACCCCTTACATGCCGCA
TATGAGCCTACTGTATGCCAACATATCAGATGAAAAAAAGAAGCAAGCAAAAGATATAGCAGACAAGCTTGATGAAGCCGTGAATGGCCTGAAGTTCCCAATCACTCGAC
TTGCACTGTACAAAACAGACACTGAGGATCAAACTCTAAAGTCCTGGGAGAAAATTGCAGAACACGATCTTCCTTCAAGTTAGCTTCTGTTTTTACCCATGCCCCTTGAA
GATCTAGACTACGTTCTGTTACACTGTTTAACGTGTTTTTTCTCAACAATGTCTGTACTCCTCTAGACTTCTTAACTGGGAAAAAAATAAATGTCAACCGAAGGCCTTGT
TTGGAAGCTTACCAAGCTTCGCGTGATTAGATTGTTTGAACCTCTTTTATTCTTTAGAAAACAAGTTTGTGTTTATTATATGAAACCAAAGAATTTCATGTATGGCATGG
AATTTAGGGAGGAAAAACCAAACTTCATTGCTGAAGGAAGATTACAGACATTACTGCATGCTCTTCCATTTGGTGAAAAGATTGCAAATGCTGAGATACCCTTTACAGCA
TCAGAAGCCTACAAAAACAGTCATGGATGTAAATCTCTACTTTTTTCAGTATCATTGTAATATGAAACTTAATCAAATTTATATTTCCTTCCACCAATTACCGCTCAAAT
TTCTCTATTTCCCATTTTTCTCTTCTAGAGAGGAGAATTGCATCTCCTTTTTCTTTTTTATTCAGAGAGTAAAAAAATAAAGCATCAGAAGAAGTTAATACTTTTAACAC
TA

Protein sequence

Show/hide protein sequence

MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVET
SSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSS

Clc01G24690 (gene) of Watermelon (cordophanus) v2 genome