; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G24760 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G24760
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionS-protein homolog
Genome locationClcChr01:35145403..35145849
RNA-Seq ExpressionClc01G24760
SyntenyClc01G24760
Gene Ontology termsGO:0060320 - rejection of self pollen (biological process)
GO:0005576 - extracellular region (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052584.1 pumilio-like protein 15-like [Cucumis melo var. makuwa]3.6e-6582.14Show/hide
Query:  LISCVVVIIAMMNQSCWAGSKTMPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPER
        L+  VVV+IAMM +SC  GSKTMPP SSWKVV+F+QLSPGQ+L+VHCKSK++DLG+H LRVGE FSWKFKENLFSTTRFWC+LTSSSKK VTMDVFWPER
Subjt:  LISCVVVIIAMMNQSCWAGSKTMPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPER

Query:  HNWLAYRCNYETCIWVAQDDGIYLVNVPMNLREFVRKWDN
        H+WLAYRCNY TCIWVAQDDGIY+VNV  NLREFVRKWDN
Subjt:  HNWLAYRCNYETCIWVAQDDGIYLVNVPMNLREFVRKWDN

KAE7997944.1 hypothetical protein FH972_002530 [Carpinus fangiana]1.3e-3051.72Show/hide
Query:  PLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHN-WLAYRCNYETCIWVAQDDGIY
        PL  W V +++ +  G+ L +HCKSK+DDLG   L VG+D SW FKEN   TT +WC +    K   T+DVFW ER N WL+YRCN++ CIW+A+DDGIY
Subjt:  PLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHN-WLAYRCNYETCIWVAQDDGIY

Query:  LVNVPMNLREFVRKWD
        L  +P N  +FV KW+
Subjt:  LVNVPMNLREFVRKWD

KAE8647731.1 hypothetical protein Csa_003821 [Cucumis sativus]2.8e-5776.87Show/hide
Query:  VIIAMMNQSCWAGSKTMPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHNWLAY
        V+IAMM + CW GSKTM PLS WKVVIF QL+PG+ L VHCKSK++DLG+H L+V ++FSWKFKENLFSTT FWCTLT+SSKK+VTMDVFWPERHNWLA 
Subjt:  VIIAMMNQSCWAGSKTMPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHNWLAY

Query:  RCNYETCIWVAQDDGIYLVNVPMNLREFVRKWDN
        RC+Y TCIWVAQDDGIYLVN   N REFVRKWD+
Subjt:  RCNYETCIWVAQDDGIYLVNVPMNLREFVRKWDN

KAG7034676.1 S-protein-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma]5.3e-4868.8Show/hide
Query:  IAMMNQSCWAGSKTMPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHNWLAYRC
        ++MM     AGSKTMPPLS WKVVIF+QL+PGQTL  HCKSK DDLGDH L+VGE +SW+FKEN+ STTRFWCT T+S  K++ MDVFWPE H WLAYRC
Subjt:  IAMMNQSCWAGSKTMPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHNWLAYRC

Query:  NYETCIWVAQDDGIYLVNVPMNLRE
        N  +C+WVAQDDG+YL N+P   RE
Subjt:  NYETCIWVAQDDGIYLVNVPMNLRE

XP_034229618.1 S-protein homolog 1-like [Prunus dulcis]1.4e-2947.06Show/hide
Query:  VVVIIAMMNQSCWAGSKTMPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPE-RHNW
        V V I  ++  C  GS      ++W V + + LS G+TL  HCKSK+DDLG+  L  G +F+W FKEN F TT +WC + S+ +K   +DVFW E  H+W
Subjt:  VVVIIAMMNQSCWAGSKTMPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPE-RHNW

Query:  LAYRCNYETCIWVAQDDGIYLVNVPMNLREFVRKWD
        L YRCN++ CIW+A+DDGIY+  +P N  EF  KW+
Subjt:  LAYRCNYETCIWVAQDDGIYLVNVPMNLREFVRKWD

TrEMBL top hitse value%identityAlignment
A0A5A7UB41 S-protein homolog1.8e-6582.14Show/hide
Query:  LISCVVVIIAMMNQSCWAGSKTMPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPER
        L+  VVV+IAMM +SC  GSKTMPP SSWKVV+F+QLSPGQ+L+VHCKSK++DLG+H LRVGE FSWKFKENLFSTTRFWC+LTSSSKK VTMDVFWPER
Subjt:  LISCVVVIIAMMNQSCWAGSKTMPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPER

Query:  HNWLAYRCNYETCIWVAQDDGIYLVNVPMNLREFVRKWDN
        H+WLAYRCNY TCIWVAQDDGIY+VNV  NLREFVRKWDN
Subjt:  HNWLAYRCNYETCIWVAQDDGIYLVNVPMNLREFVRKWDN

A0A5E4EJG4 S-protein homolog7.0e-3047.06Show/hide
Query:  VVVIIAMMNQSCWAGSKTMPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPE-RHNW
        V V I  ++  C  GS      ++W V + + LS G+TL  HCKSK+DDLG+  L  G +F+W FKEN F TT +WC + S+ +K   +DVFW E  H+W
Subjt:  VVVIIAMMNQSCWAGSKTMPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPE-RHNW

Query:  LAYRCNYETCIWVAQDDGIYLVNVPMNLREFVRKWD
        L YRCN++ CIW+A+DDGIY+  +P N  EF  KW+
Subjt:  LAYRCNYETCIWVAQDDGIYLVNVPMNLREFVRKWD

A0A5N6QHU0 S-protein homolog6.3e-3151.72Show/hide
Query:  PLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHN-WLAYRCNYETCIWVAQDDGIY
        PL  W V +++ +  G+ L +HCKSK+DDLG   L VG+D SW FKEN   TT +WC +    K   T+DVFW ER N WL+YRCN++ CIW+A+DDGIY
Subjt:  PLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHN-WLAYRCNYETCIWVAQDDGIY

Query:  LVNVPMNLREFVRKWD
        L  +P N  +FV KW+
Subjt:  LVNVPMNLREFVRKWD

A0A6J1ESA0 S-protein homolog4.5e-2953.04Show/hide
Query:  PLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHN-WLAYRCNYETCIWVAQDDGIY
        P  SW+VVI +  S  Q L+VHCKS +DDLG H ++V +D+ WKFK NL+ +TRFWCT   S    ++ DVFWPE  + WL  RC Y +CIWVA+D+GIY
Subjt:  PLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHN-WLAYRCNYETCIWVAQDDGIY

Query:  LVNVPMNLREFVRKW
        L N P N  E + KW
Subjt:  LVNVPMNLREFVRKW

A0A6P4ABD6 S-protein homolog1.2e-2944.53Show/hide
Query:  VVIIAMMNQSCWAGSK--TMPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPE-RHN
        V++++ M++ C   ++  T  PL  + + I + LS G+ L +HC+SK+DDLG+H L  G  F+W F+ N + TTRFWC       +    DVFWPE RH 
Subjt:  VVIIAMMNQSCWAGSK--TMPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPE-RHN

Query:  WLAYRCNYETCIWVAQDDGIYLVNVPMNLREFVRKWD
        WL  RC+Y+ CIW A+DDG YL NVP+N  E + KW+
Subjt:  WLAYRCNYETCIWVAQDDGIYLVNVPMNLREFVRKWD

SwissProt top hitse value%identityAlignment
F4JLS0 S-protein homolog 18.8e-2234.44Show/hide
Query:  MNIVMNYGLISCVVVIIAMMNQSCWAGSKT----MPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSK
        MN +  + L  C  + +   +     G+ T    +P +S W+V + + L+ G+TL +HCKSK DDLG+  L+    FSW F EN+  +T FWC + +   
Subjt:  MNIVMNYGLISCVVVIIAMMNQSCWAGSKT----MPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSK

Query:  KQVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIYLVNVPMNLREFVRKWD
          + ++VFW +    L +RC ++ CIW A+ DG+YL N         RKW+
Subjt:  KQVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIYLVNVPMNLREFVRKWD

P0DN92 S-protein homolog 242.4e-1131.36Show/hide
Query:  VVIIAMMNQSCWAGSKTMPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHNWLA
        +V+I+++        +   P+      +  Q      L +HCKS++DDLG H L  GE F WKF  N   +T ++C  +    K+   +++   R N   
Subjt:  VVIIAMMNQSCWAGSKTMPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHNWLA

Query:  YRCNYETCIWVAQDDGIY
        YRC    C W A+ DGIY
Subjt:  YRCNYETCIWVAQDDGIY

P0DN93 S-protein homolog 297.7e-1034.88Show/hide
Query:  PLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHNWLAYRCNY
        P +   V + + +SP  TL++ C+SK+DDLG+H L  G+ F WKF+ + F TT F C    ++  +   D +  +R     Y CN+
Subjt:  PLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHNWLAYRCNY

Q2HQ46 S-protein homolog 745.7e-2133.33Show/hide
Query:  MNIVMNYGLISCVVVIIAMMNQSCWAGSKT----MPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSK
        MN +  + L  C  +++   +      + T    +P +S W+V + + L+ G+TL +HCKSK +DLGD  L+  + FSW F EN+  +T FWC + S   
Subjt:  MNIVMNYGLISCVVVIIAMMNQSCWAGSKT----MPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSK

Query:  KQVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIYLVNVPMNLREFVRKW
          + + VFW +    L +RC+++ C+W A++DG+YL N  +       KW
Subjt:  KQVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIYLVNVPMNLREFVRKW

Q9FI84 S-protein homolog 273.5e-1036.08Show/hide
Query:  LSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIY-LVNVPMNLREFVRKW
        L +HCKSK+DDLG H  + GE + WKF  N  ++T ++C  +     +   D+   ER     YRC    C W A+ D +Y   N+P  +  F  KW
Subjt:  LSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIY-LVNVPMNLREFVRKW

Arabidopsis top hitse value%identityAlignment
AT3G26880.1 Plant self-incompatibility protein S1 family9.3e-1134.74Show/hide
Query:  VVIFHQLSP--GQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIY
        + + ++L+P     L VHCKSKN+D+G  +L++GE  S+ FK N + TT FWC L      +    +   +     A   +  +  W+A+DDGIY
Subjt:  VVIFHQLSP--GQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIY

AT4G16295.1 S-protein homologue 16.2e-2334.44Show/hide
Query:  MNIVMNYGLISCVVVIIAMMNQSCWAGSKT----MPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSK
        MN +  + L  C  + +   +     G+ T    +P +S W+V + + L+ G+TL +HCKSK DDLG+  L+    FSW F EN+  +T FWC + +   
Subjt:  MNIVMNYGLISCVVVIIAMMNQSCWAGSKT----MPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSK

Query:  KQVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIYLVNVPMNLREFVRKWD
          + ++VFW +    L +RC ++ CIW A+ DG+YL N         RKW+
Subjt:  KQVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIYLVNVPMNLREFVRKWD

AT4G29035.1 Plant self-incompatibility protein S1 family4.0e-2233.33Show/hide
Query:  MNIVMNYGLISCVVVIIAMMNQSCWAGSKT----MPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSK
        MN +  + L  C  +++   +      + T    +P +S W+V + + L+ G+TL +HCKSK +DLGD  L+  + FSW F EN+  +T FWC + S   
Subjt:  MNIVMNYGLISCVVVIIAMMNQSCWAGSKT----MPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSK

Query:  KQVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIYLVNVPMNLREFVRKW
          + + VFW +    L +RC+++ C+W A++DG+YL N  +       KW
Subjt:  KQVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIYLVNVPMNLREFVRKW

AT5G04350.1 Plant self-incompatibility protein S1 family1.4e-1431.86Show/hide
Query:  CWAGSKTMPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHNWLAYRCNYE----
        C   S     +   KVV+ +QL   + L VHC+SK+DDLG+H L++G+D+ + F +N++ TT F C +      +  +D        ++AY  ++     
Subjt:  CWAGSKTMPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHNWLAYRCNYE----

Query:  -TCIWVAQDDGIY
         +C W+ ++DGIY
Subjt:  -TCIWVAQDDGIY

AT5G06020.1 Plant self-incompatibility protein S1 family2.5e-1136.08Show/hide
Query:  LSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIY-LVNVPMNLREFVRKW
        L +HCKSK+DDLG H  + GE + WKF  N  ++T ++C  +     +   D+   ER     YRC    C W A+ D +Y   N+P  +  F  KW
Subjt:  LSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIY-LVNVPMNLREFVRKW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATATTGTGATGAACTATGGTCTCATTTCATGTGTTGTAGTGATAATAGCGATGATGAATCAATCATGTTGGGCAGGCTCAAAAACTATGCCACCATTGAGTTCATG
GAAGGTGGTGATTTTTCACCAATTGAGTCCAGGCCAAACTTTATCTGTTCATTGCAAATCAAAAAATGACGATTTGGGCGATCATTTTTTGCGGGTGGGTGAAGATTTTT
CATGGAAATTCAAAGAGAATCTGTTTTCAACTACTCGTTTTTGGTGTACTTTAACAAGTTCATCAAAGAAACAAGTGACTATGGATGTGTTTTGGCCAGAGAGACACAAT
TGGCTTGCTTATAGATGCAATTATGAGACTTGTATTTGGGTTGCTCAAGATGATGGTATTTATTTGGTGAATGTTCCCATGAATTTGAGGGAGTTTGTGCGTAAATGGGA
CAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATATTGTGATGAACTATGGTCTCATTTCATGTGTTGTAGTGATAATAGCGATGATGAATCAATCATGTTGGGCAGGCTCAAAAACTATGCCACCATTGAGTTCATG
GAAGGTGGTGATTTTTCACCAATTGAGTCCAGGCCAAACTTTATCTGTTCATTGCAAATCAAAAAATGACGATTTGGGCGATCATTTTTTGCGGGTGGGTGAAGATTTTT
CATGGAAATTCAAAGAGAATCTGTTTTCAACTACTCGTTTTTGGTGTACTTTAACAAGTTCATCAAAGAAACAAGTGACTATGGATGTGTTTTGGCCAGAGAGACACAAT
TGGCTTGCTTATAGATGCAATTATGAGACTTGTATTTGGGTTGCTCAAGATGATGGTATTTATTTGGTGAATGTTCCCATGAATTTGAGGGAGTTTGTGCGTAAATGGGA
CAACTAA
Protein sequenceShow/hide protein sequence
MNIVMNYGLISCVVVIIAMMNQSCWAGSKTMPPLSSWKVVIFHQLSPGQTLSVHCKSKNDDLGDHFLRVGEDFSWKFKENLFSTTRFWCTLTSSSKKQVTMDVFWPERHN
WLAYRCNYETCIWVAQDDGIYLVNVPMNLREFVRKWDN