; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G25030 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G25030
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionconserved peptide upstream open reading frame 35
Genome locationClcChr01:35344072..35347628
RNA-Seq ExpressionClc01G25030
SyntenyClc01G25030
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647743.1 hypothetical protein Csa_002958 [Cucumis sativus]3.8e-1697.92Show/hide
Query:  MCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        M IGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
Subjt:  MCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT

KAF4360142.1 hypothetical protein F8388_000011, partial [Cannabis sativa]2.1e-1474.58Show/hide
Query:  FTFILLVGGVRMCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        F  + LVGGVRM I I+ KR RAV+E+GK+ MSVG+IAYYQ+MQVCQAEYFRQLLKPVT
Subjt:  FTFILLVGGVRMCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT

PPR97774.1 hypothetical protein GOBAR_AA22895 [Gossypium barbadense]8.0e-1458.97Show/hide
Query:  WIGGNSNIEFVGLYYFCGFFTFILLVGGVRMCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        W   N  I F+ L +  G F     VGGVRM I +T KR RA++E+GK+ MSVG+IAYY+++QVCQAEYFRQLLKPVT
Subjt:  WIGGNSNIEFVGLYYFCGFFTFILLVGGVRMCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT

PQQ06331.1 PLASMODESMATA CALLOSE-BINDING PROTEIN 2 [Prunus yedoensis var. nudiflora]3.6e-1473.68Show/hide
Query:  FILLVGGVRMCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        F  +V GVRM IG+T KR RA++E+GK+ MSVG+IAYYQ+MQVCQAEYFRQLLKPVT
Subjt:  FILLVGGVRMCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT

XP_020417230.1 PLASMODESMATA CALLOSE-BINDING PROTEIN 2 [Prunus persica]2.7e-1476.36Show/hide
Query:  LLVGGVRMCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        L+V GVRM IG+T KR RA++E+GK+ MSVG+IAYYQ+MQVCQAEYFRQLLKPVT
Subjt:  LLVGGVRMCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT

TrEMBL top hitse value%identityAlignment
A0A251PKI6 Uncharacterized protein6.2e-1277.08Show/hide
Query:  MCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        M IG+T KR RA++E+GK+ MSVG+IAYYQ+MQVCQAEYFRQLLKPVT
Subjt:  MCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT

A0A2P5X359 Uncharacterized protein3.9e-1458.97Show/hide
Query:  WIGGNSNIEFVGLYYFCGFFTFILLVGGVRMCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        W   N  I F+ L +  G F     VGGVRM I +T KR RA++E+GK+ MSVG+IAYY+++QVCQAEYFRQLLKPVT
Subjt:  WIGGNSNIEFVGLYYFCGFFTFILLVGGVRMCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT

A0A314YMT4 PLASMODESMATA CALLOSE-BINDING PROTEIN 21.7e-1473.68Show/hide
Query:  FILLVGGVRMCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        F  +V GVRM IG+T KR RA++E+GK+ MSVG+IAYYQ+MQVCQAEYFRQLLKPVT
Subjt:  FILLVGGVRMCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT

A0A5B6U445 Transcription factor bHLH1449.5e-1357.14Show/hide
Query:  SFCNLFWIGGNSNIEFVGLYYFCGFFTFILLVGGVRMCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        SF N   + G   I F+ L +  G F     VGGVRM I +T KR RA++E+GK+ MSVG+IAYY+++QVCQAEYFRQLLKPVT
Subjt:  SFCNLFWIGGNSNIEFVGLYYFCGFFTFILLVGGVRMCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT

A0A7J6ENW5 Uncharacterized protein1.0e-1474.58Show/hide
Query:  FTFILLVGGVRMCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        F  + LVGGVRM I I+ KR RAV+E+GK+ MSVG+IAYYQ+MQVCQAEYFRQLLKPVT
Subjt:  FTFILLVGGVRMCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G29951.1 conserved peptide upstream open reading frame 352.8e-0962.5Show/hide
Query:  MCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        MCI    K NR+++EIG   M+   IA YQ +QVCQAEYFRQLLKPVT
Subjt:  MCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT

AT5G50011.1 conserved peptide upstream open reading frame 371.6e-0468.97Show/hide
Query:  NMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        N+ V +IA +Q +Q CQAEYFRQLLKPVT
Subjt:  NMSVGIIAYYQVMQVCQAEYFRQLLKPVT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAACAGCTCTGGAATCACTTTAGGATTGGCAGCAAGTGTGTTCGCTTGGTGGTCTTCTTTCGTGTCATTCTGTAATTTGTTTTGGATTGGGGGCAATTCAAACAT
TGAGTTTGTTGGTCTATATTACTTTTGCGGTTTTTTCACTTTTATATTACTGGTTGGAGGAGTGAGAATGTGCATTGGTATAACGGGAAAGAGAAACAGAGCTGTCGAGG
AAATTGGGAAAGTTAACATGAGTGTTGGAATCATTGCCTACTACCAAGTAATGCAAGTTTGTCAGGCCGAGTATTTTCGCCAGTTGCTAAAGCCTGTCACGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTAACAGCTCTGGAATCACTTTAGGATTGGCAGCAAGTGTGTTCGCTTGGTGGTCTTCTTTCGTGTCATTCTGTAATTTGTTTTGGATTGGGGGCAATTCAAACAT
TGAGTTTGTTGGTCTATATTACTTTTGCGGTTTTTTCACTTTTATATTACTGGTTGGAGGAGTGAGAATGTGCATTGGTATAACGGGAAAGAGAAACAGAGCTGTCGAGG
AAATTGGGAAAGTTAACATGAGTGTTGGAATCATTGCCTACTACCAAGTAATGCAAGTTTGTCAGGCCGAGTATTTTCGCCAGTTGCTAAAGCCTGTCACGTAG
Protein sequenceShow/hide protein sequence
MTNSSGITLGLAASVFAWWSSFVSFCNLFWIGGNSNIEFVGLYYFCGFFTFILLVGGVRMCIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT