; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G25090 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G25090
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionbeta-xylosidase 1
Genome locationClcChr01:35372683..35373291
RNA-Seq ExpressionClc01G25090
SyntenyClc01G25090
Gene Ontology termsGO:0031222 - arabinan catabolic process (biological process)
GO:0045493 - xylan catabolic process (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0009044 - xylan 1,4-beta-xylosidase activity (molecular function)
GO:0046556 - alpha-L-arabinofuranosidase activity (molecular function)
InterPro domainsIPR017853 - Glycoside hydrolase superfamily
IPR036962 - Glycoside hydrolase, family 3, N-terminal domain superfamily
IPR044993 - Beta-D-xylosidase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052557.1 putative beta-D-xylosidase 2 [Cucumis melo var. makuwa]1.2e-6385.62Show/hide
Query:  MANSSTLMVSILSVFFICTANARVFPRRTLFDDPDPPAVNNFTFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRL
        MA+SS +++S+LSVFFI TANAR FPRRTL DDP PPAVNNFTFVCDPSRY NLGLD+SSF FCDSSLSFPERAKDL+DRMTLSEKVAQLG  A+GV RL
Subjt:  MANSSTLMVSILSVFFICTANARVFPRRTLFDDPDPPAVNNFTFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRL

Query:  GLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAASFNE
        GLPPYNWWSEALHGVSNVG GT FDEVVPGATSFPNVITTA+SFNE
Subjt:  GLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAASFNE

KAE8647744.1 hypothetical protein Csa_003474 [Cucumis sativus]1.4e-6182.88Show/hide
Query:  MANSSTLMVSILSVFFICTANARVFPRRTLFDDPDPPAVNNFTFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRL
        MA+S  +M+S+LS+FFI TANARVFPRR+L D  DPPAVNNFTFVCDPSRY  LGLD SSF FCDSSLSFPERAKDL+DRMTLSEK AQLG  A+GVDRL
Subjt:  MANSSTLMVSILSVFFICTANARVFPRRTLFDDPDPPAVNNFTFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRL

Query:  GLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAASFNE
        GLPPYNWWSEALHGVSNVG GT FD+VVPGATSFPNVITTA+SFNE
Subjt:  GLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAASFNE

TYK13269.1 putative beta-D-xylosidase 2 [Cucumis melo var. makuwa]1.2e-6385.62Show/hide
Query:  MANSSTLMVSILSVFFICTANARVFPRRTLFDDPDPPAVNNFTFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRL
        MA+SS +++S+LSVFFI TANAR FPRRTL DDP PPAVNNFTFVCDPSRY NLGLD+SSF FCDSSLSFPERAKDL+DRMTLSEKVAQLG  A+GV RL
Subjt:  MANSSTLMVSILSVFFICTANARVFPRRTLFDDPDPPAVNNFTFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRL

Query:  GLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAASFNE
        GLPPYNWWSEALHGVSNVG GT FDEVVPGATSFPNVITTA+SFNE
Subjt:  GLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAASFNE

XP_016899142.1 PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1-like [Cucumis melo]1.2e-6385.62Show/hide
Query:  MANSSTLMVSILSVFFICTANARVFPRRTLFDDPDPPAVNNFTFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRL
        MA+SS +++S+LSVFFI TANAR FPRRTL DDP PPAVNNFTFVCDPSRY NLGLD+SSF FCDSSLSFPERAKDL+DRMTLSEKVAQLG  A+GV RL
Subjt:  MANSSTLMVSILSVFFICTANARVFPRRTLFDDPDPPAVNNFTFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRL

Query:  GLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAASFNE
        GLPPYNWWSEALHGVSNVG GT FDEVVPGATSFPNVITTA+SFNE
Subjt:  GLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAASFNE

XP_038883918.1 probable beta-D-xylosidase 2 [Benincasa hispida]2.1e-6589.73Show/hide
Query:  MANSSTLMVSILSVFFICTANARVFPRRTLFDDPDPPAVNNFTFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRL
        MA SSTLMVSILSVFFI TANARVFP RTL D  DPPA+NNFTFVCDPSRY NLGLDLSSF FCDSSLSFPERAKDLVDRMTLSEKVAQLG  AAGVD L
Subjt:  MANSSTLMVSILSVFFICTANARVFPRRTLFDDPDPPAVNNFTFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRL

Query:  GLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAASFNE
        GLPPYNWWSEALHGVSNVG GT FD VVPGATSFPNVITTAASFNE
Subjt:  GLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAASFNE

TrEMBL top hitse value%identityAlignment
A0A0A0KKL2 Uncharacterized protein6.9e-6282.88Show/hide
Query:  MANSSTLMVSILSVFFICTANARVFPRRTLFDDPDPPAVNNFTFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRL
        MA+S  +M+S+LS+FFI TANARVFPRR+L D  DPPAVNNFTFVCDPSRY  LGLD SSF FCDSSLSFPERAKDL+DRMTLSEK AQLG  A+GVDRL
Subjt:  MANSSTLMVSILSVFFICTANARVFPRRTLFDDPDPPAVNNFTFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRL

Query:  GLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAASFNE
        GLPPYNWWSEALHGVSNVG GT FD+VVPGATSFPNVITTA+SFNE
Subjt:  GLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAASFNE

A0A1S4DT18 beta-xylosidase/alpha-L-arabinofuranosidase 1-like5.6e-6485.62Show/hide
Query:  MANSSTLMVSILSVFFICTANARVFPRRTLFDDPDPPAVNNFTFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRL
        MA+SS +++S+LSVFFI TANAR FPRRTL DDP PPAVNNFTFVCDPSRY NLGLD+SSF FCDSSLSFPERAKDL+DRMTLSEKVAQLG  A+GV RL
Subjt:  MANSSTLMVSILSVFFICTANARVFPRRTLFDDPDPPAVNNFTFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRL

Query:  GLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAASFNE
        GLPPYNWWSEALHGVSNVG GT FDEVVPGATSFPNVITTA+SFNE
Subjt:  GLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAASFNE

A0A5A7UDL8 Putative beta-D-xylosidase 25.6e-6485.62Show/hide
Query:  MANSSTLMVSILSVFFICTANARVFPRRTLFDDPDPPAVNNFTFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRL
        MA+SS +++S+LSVFFI TANAR FPRRTL DDP PPAVNNFTFVCDPSRY NLGLD+SSF FCDSSLSFPERAKDL+DRMTLSEKVAQLG  A+GV RL
Subjt:  MANSSTLMVSILSVFFICTANARVFPRRTLFDDPDPPAVNNFTFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRL

Query:  GLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAASFNE
        GLPPYNWWSEALHGVSNVG GT FDEVVPGATSFPNVITTA+SFNE
Subjt:  GLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAASFNE

A0A5D3CSU1 Putative beta-D-xylosidase 25.6e-6485.62Show/hide
Query:  MANSSTLMVSILSVFFICTANARVFPRRTLFDDPDPPAVNNFTFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRL
        MA+SS +++S+LSVFFI TANAR FPRRTL DDP PPAVNNFTFVCDPSRY NLGLD+SSF FCDSSLSFPERAKDL+DRMTLSEKVAQLG  A+GV RL
Subjt:  MANSSTLMVSILSVFFICTANARVFPRRTLFDDPDPPAVNNFTFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRL

Query:  GLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAASFNE
        GLPPYNWWSEALHGVSNVG GT FDEVVPGATSFPNVITTA+SFNE
Subjt:  GLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAASFNE

A0A6J1CLQ5 probable beta-D-xylosidase 58.1e-5577.55Show/hide
Query:  MANSSTLMVSILSVFFICTANARVFPRRTL-FDDPDPPAVNNFTFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDR
        MAN S  +V IL++FF+ +ANARVFP RT+  DD  P   NNFTFVCD SRYANLGLD+S + FCDSSLSF ERAKDLVDRMTL+EKVAQLG RAAGV R
Subjt:  MANSSTLMVSILSVFFICTANARVFPRRTL-FDDPDPPAVNNFTFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDR

Query:  LGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAASFNE
        +GLPPYNWWSEALHGVSNVG GT FD+VVPGATSFP VITTAASFNE
Subjt:  LGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAASFNE

SwissProt top hitse value%identityAlignment
A5JTQ2 Beta-xylosidase/alpha-L-arabinofuranosidase 1 (Fragment)1.8e-2757.84Show/hide
Query:  FVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRLGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAAS
        F CD ++  N    +SS+ FCD+SLS  +R  DLV R+TL EK+  LG+ A  V RLG+P Y WWSEALHGVSN+G GT F  +VPGAT+FP  I TAAS
Subjt:  FVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRLGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAAS

Query:  FN
        FN
Subjt:  FN

A5JTQ3 Beta-xylosidase/alpha-L-arabinofuranosidase 23.2e-2454.9Show/hide
Query:  FVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRLGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAAS
        F CD ++       L+++ FC+  LS   R KDLV R+TL EKV  L + A  V RLG+P Y WWSEALHGVSN+G GT F  V+PGATSFP  I  AAS
Subjt:  FVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRLGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAAS

Query:  FN
        FN
Subjt:  FN

Q94KD8 Probable beta-D-xylosidase 21.3e-2556.31Show/hide
Query:  TFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRLGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAA
        TF CD    A      ++  FC  S+  PER +DL+ R+TL+EKV+ LG+ AA + RLG+  Y WWSEALHGVSNVG GT F  V P ATSFP VITT A
Subjt:  TFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRLGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAA

Query:  SFN
        SFN
Subjt:  SFN

Q9LJN4 Probable beta-D-xylosidase 51.2e-2659.8Show/hide
Query:  FVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRLGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAAS
        F CD S  A      + + FC+ SLS+  RAKDLV R++L EKV QL ++A GV RLG+PPY WWSEALHGVS+VG G  F+  VPGATSFP  I TAAS
Subjt:  FVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRLGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAAS

Query:  FN
        FN
Subjt:  FN

Q9LXD6 Beta-D-xylosidase 33.2e-2455.88Show/hide
Query:  FVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRLGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAAS
        F CD +   +    L+   FC++ LS   R  DLV R+TL EK+  L  +A GV RLG+P Y WWSEALHGVSNVG G+ F   VPGATSFP VI TAAS
Subjt:  FVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRLGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAAS

Query:  FN
        FN
Subjt:  FN

Arabidopsis top hitse value%identityAlignment
AT1G02640.1 beta-xylosidase 29.2e-2756.31Show/hide
Query:  TFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRLGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAA
        TF CD    A      ++  FC  S+  PER +DL+ R+TL+EKV+ LG+ AA + RLG+  Y WWSEALHGVSNVG GT F  V P ATSFP VITT A
Subjt:  TFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRLGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAA

Query:  SFN
        SFN
Subjt:  SFN

AT3G19620.1 Glycosyl hydrolase family protein8.4e-2859.8Show/hide
Query:  FVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRLGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAAS
        F CD S  A      + + FC+ SLS+  RAKDLV R++L EKV QL ++A GV RLG+PPY WWSEALHGVS+VG G  F+  VPGATSFP  I TAAS
Subjt:  FVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRLGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAAS

Query:  FN
        FN
Subjt:  FN

AT5G09730.1 beta-xylosidase 32.3e-2555.88Show/hide
Query:  FVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRLGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAAS
        F CD +   +    L+   FC++ LS   R  DLV R+TL EK+  L  +A GV RLG+P Y WWSEALHGVSNVG G+ F   VPGATSFP VI TAAS
Subjt:  FVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRLGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAAS

Query:  FN
        FN
Subjt:  FN

AT5G49360.1 beta-xylosidase 16.2e-2351.46Show/hide
Query:  FVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRLGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAAS
        F CDP+     GL   +  FC +++    R +DL+ R+TL EK+  L + AA V RLG+  Y WWSEALHG+S+VG G  F    PGATSFP VITTAAS
Subjt:  FVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRLGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAAS

Query:  FNE
        FN+
Subjt:  FNE

AT5G64570.1 beta-D-xylosidase 42.5e-2453.92Show/hide
Query:  FVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRLGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAAS
        F CD +   +    L+++ FC++ L    R  DLV R+TL EK+  L  +A GV RLG+P Y WWSEALHGVS +G GT F   VPGATSFP VI TAAS
Subjt:  FVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRLGLPPYNWWSEALHGVSNVGHGTWFDEVVPGATSFPNVITTAAS

Query:  FN
        FN
Subjt:  FN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAATTCATCAACCCTCATGGTTTCAATTCTTTCTGTGTTCTTTATTTGCACCGCCAATGCTAGAGTTTTCCCGAGAAGAACTCTCTTTGATGACCCTGACCCTCC
AGCTGTTAACAACTTCACTTTTGTCTGTGATCCCTCTAGATATGCCAATCTTGGCTTAGACCTTTCTTCATTTCACTTCTGTGATTCATCTCTCTCTTTCCCTGAGAGAG
CTAAGGATCTTGTAGATAGAATGACATTGTCTGAGAAAGTTGCTCAGCTCGGAGATCGTGCTGCTGGAGTAGACCGCCTCGGCTTGCCACCATACAATTGGTGGTCTGAG
GCTCTCCATGGCGTCTCCAATGTTGGTCACGGTACCTGGTTTGACGAAGTTGTGCCAGGTGCCACAAGCTTCCCCAATGTCATTACCACTGCAGCTTCTTTCAATGAGGG
ATGA
mRNA sequenceShow/hide mRNA sequence
CCACAAAATCCATCTCCAAATCCACTTTTGGTTCTTTCCACTAAGGAACCCAACTAAAATGGCGAATTCATCAACCCTCATGGTTTCAATTCTTTCTGTGTTCTTTATTT
GCACCGCCAATGCTAGAGTTTTCCCGAGAAGAACTCTCTTTGATGACCCTGACCCTCCAGCTGTTAACAACTTCACTTTTGTCTGTGATCCCTCTAGATATGCCAATCTT
GGCTTAGACCTTTCTTCATTTCACTTCTGTGATTCATCTCTCTCTTTCCCTGAGAGAGCTAAGGATCTTGTAGATAGAATGACATTGTCTGAGAAAGTTGCTCAGCTCGG
AGATCGTGCTGCTGGAGTAGACCGCCTCGGCTTGCCACCATACAATTGGTGGTCTGAGGCTCTCCATGGCGTCTCCAATGTTGGTCACGGTACCTGGTTTGACGAAGTTG
TGCCAGGTGCCACAAGCTTCCCCAATGTCATTACCACTGCAGCTTCTTTCAATGAGGGATGAGAAGATGGTCGGTTTTGGGGATGTACGACCATTTTCTTTTCTTTGCAG
TGAATAATGTTAATAATTAATAATATTCTTTGGTTAGGATTTTTTGTTTTGTTTTGTTG
Protein sequenceShow/hide protein sequence
MANSSTLMVSILSVFFICTANARVFPRRTLFDDPDPPAVNNFTFVCDPSRYANLGLDLSSFHFCDSSLSFPERAKDLVDRMTLSEKVAQLGDRAAGVDRLGLPPYNWWSE
ALHGVSNVGHGTWFDEVVPGATSFPNVITTAASFNEG