; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G25210 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G25210
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransmembrane protein, putative
Genome locationClcChr01:35452208..35452853
RNA-Seq ExpressionClc01G25210
SyntenyClc01G25210
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052545.1 hypothetical protein E6C27_scaffold120G001480 [Cucumis melo var. makuwa]1.8e-4372.05Show/hide
Query:  MGFKIPSSISP-SSPNYLYFFQISLSLILFFLLIS-TSSAKTLPHKTNDVLLRRHRTT--LHGGPP-TTPRREVD-HRHQYYTTNKLQMEIKINK-SKKK
        MGFKIPSS SP SSPNYL FFQISLSLILFFL+ S TSS K LPH++N+V    HR T  +HG    TT  REVD H H+ Y + KL+MEIKINK SKK 
Subjt:  MGFKIPSSISP-SSPNYLYFFQISLSLILFFLLIS-TSSAKTLPHKTNDVLLRRHRTT--LHGGPP-TTPRREVD-HRHQYYTTNKLQMEIKINK-SKKK

Query:  KK---VPVGFKSNNN---NNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHLDRP
        KK   VP GFKS+NN   N+KGSAFSVMLPKGFVPPSGSSPCHNENPQSSSL FYCHLDRP
Subjt:  KK---VPVGFKSNNN---NNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHLDRP

KAG6581427.1 hypothetical protein SDJN03_21429, partial [Cucurbita argyrosperma subsp. sororia]4.6e-3663.58Show/hide
Query:  MGFKIPSSISPSSPNYLYFFQISLSLILFFLLISTSSAKTLPHKTNDVLLRRHRTTLHGGPPTT-----PRREVDHRHQYYTTNKLQMEIKINKSKKKKK
        MGFKI S           FFQIS+SLILFFLLIS+SS+  L    +DV L RHRTTLHGG PTT     P+REVD     Y  NKLQM IK    K KKK
Subjt:  MGFKIPSSISPSSPNYLYFFQISLSLILFFLLISTSSAKTLPHKTNDVLLRRHRTTLHGGPPTT-----PRREVDHRHQYYTTNKLQMEIKINKSKKKKK

Query:  VPVGFKSN-NNNNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHL
            F+SN NNNNKG+AFSVMLPKGFVPPSGSSPCHN++PQSSS  FYCHL
Subjt:  VPVGFKSN-NNNNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHL

KAG6594469.1 hypothetical protein SDJN03_11022, partial [Cucurbita argyrosperma subsp. sororia]1.6e-2556.85Show/hide
Query:  MGFKIPSSISPSSPNYLYFFQISLSLILFFLLISTSSAKTLP-HKTNDVLLRRHRTTLHGGPPTTPRREVDHRHQYYTTNKLQMEIKINKSKKKKKVPVG
        MGFKI  S    SPNYLY+  ISLSLILFFLLIS SSA+ LP  + N     RHRTTLH G PTT           +T  KLQME     +KKKKK    
Subjt:  MGFKIPSSISPSSPNYLYFFQISLSLILFFLLISTSSAKTLP-HKTNDVLLRRHRTTLHGGPPTTPRREVDHRHQYYTTNKLQMEIKINKSKKKKKVPVG

Query:  FKSNNNNNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHL
               NK +AFS MLPKGFVPPSGSSPCHNENP+   + FYCHL
Subjt:  FKSNNNNNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHL

KAG7026467.1 hypothetical protein SDJN02_10467, partial [Cucurbita argyrosperma subsp. argyrosperma]4.3e-2656.85Show/hide
Query:  MGFKIPSSISPSSPNYLYFFQISLSLILFFLLISTSSAKTLP-HKTNDVLLRRHRTTLHGGPPTTPRREVDHRHQYYTTNKLQMEIKINKSKKKKKVPVG
        MGFKI  S    SPNYLY+  ISLSLILFFLLIS+SSA+ LP  + N     RHRTTLH G PTT           +T  KLQME     +KKKKK    
Subjt:  MGFKIPSSISPSSPNYLYFFQISLSLILFFLLISTSSAKTLP-HKTNDVLLRRHRTTLHGGPPTTPRREVDHRHQYYTTNKLQMEIKINKSKKKKKVPVG

Query:  FKSNNNNNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHL
               NK +AFS MLPKGFVPPSGSSPCHNENP+   + FYCHL
Subjt:  FKSNNNNNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHL

KGN49393.1 hypothetical protein Csa_004373 [Cucumis sativus]8.1e-4169.94Show/hide
Query:  MGFKIPSSISPSSPNYLYFFQISLSLILFFLLI-STSSAKTLP-HKTNDVLLRRHRTT-LHGGPPTTPRREVDHRHQY---YTTNKLQMEIKINK-SKK-
        MGFKIPSS   SSPNYL FFQISLSLILFFLL  +TSS K LP H+ ++V   RHRTT +HG   TT RREVDH H +   Y +NKL+MEIKINK SKK 
Subjt:  MGFKIPSSISPSSPNYLYFFQISLSLILFFLLI-STSSAKTLP-HKTNDVLLRRHRTT-LHGGPPTTPRREVDHRHQY---YTTNKLQMEIKINK-SKK-

Query:  -KKKV---PVGFKSNNN---NNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHLDRP
         K+KV   P GFKS+N+   N+KGSAFS MLPKGFVPPSGSSPCHNE+PQSSSL FYCHLDRP
Subjt:  -KKKV---PVGFKSNNN---NNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHLDRP

TrEMBL top hitse value%identityAlignment
A0A067L1H6 Uncharacterized protein6.8e-0950Show/hide
Query:  TTLHGGPPTTPRREVDHRHQYYTTNKLQM-----EIKINKSKKKKKVPVGFKSNN--NNNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHL
        +T HG  P T  +E      +Y  N         E  INK KK KK  V  K      N K  AFSVMLPKGFVPPSGSSPCHNE P +S LTF+C L
Subjt:  TTLHGGPPTTPRREVDHRHQYYTTNKLQM-----EIKINKSKKKKKVPVGFKSNN--NNNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHL

A0A0A0KIK1 Uncharacterized protein3.9e-4169.94Show/hide
Query:  MGFKIPSSISPSSPNYLYFFQISLSLILFFLLI-STSSAKTLP-HKTNDVLLRRHRTT-LHGGPPTTPRREVDHRHQY---YTTNKLQMEIKINK-SKK-
        MGFKIPSS   SSPNYL FFQISLSLILFFLL  +TSS K LP H+ ++V   RHRTT +HG   TT RREVDH H +   Y +NKL+MEIKINK SKK 
Subjt:  MGFKIPSSISPSSPNYLYFFQISLSLILFFLLI-STSSAKTLP-HKTNDVLLRRHRTT-LHGGPPTTPRREVDHRHQY---YTTNKLQMEIKINK-SKK-

Query:  -KKKV---PVGFKSNNN---NNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHLDRP
         K+KV   P GFKS+N+   N+KGSAFS MLPKGFVPPSGSSPCHNE+PQSSSL FYCHLDRP
Subjt:  -KKKV---PVGFKSNNN---NNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHLDRP

A0A444WWS8 Uncharacterized protein2.6e-0846.75Show/hide
Query:  VDHRHQYYTTNKLQMEIKINKSKKKKKVPVGFKSNNNNNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHL
        +  R +    N   M+ K NK+  K K      S++++++  AFSVMLPKGFVPPSGSSPCHN+ P S+  +F+CHL
Subjt:  VDHRHQYYTTNKLQMEIKINKSKKKKKVPVGFKSNNNNNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHL

A0A5A7UFQ9 Uncharacterized protein8.5e-4472.05Show/hide
Query:  MGFKIPSSISP-SSPNYLYFFQISLSLILFFLLIS-TSSAKTLPHKTNDVLLRRHRTT--LHGGPP-TTPRREVD-HRHQYYTTNKLQMEIKINK-SKKK
        MGFKIPSS SP SSPNYL FFQISLSLILFFL+ S TSS K LPH++N+V    HR T  +HG    TT  REVD H H+ Y + KL+MEIKINK SKK 
Subjt:  MGFKIPSSISP-SSPNYLYFFQISLSLILFFLLIS-TSSAKTLPHKTNDVLLRRHRTT--LHGGPP-TTPRREVD-HRHQYYTTNKLQMEIKINK-SKKK

Query:  KK---VPVGFKSNNN---NNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHLDRP
        KK   VP GFKS+NN   N+KGSAFSVMLPKGFVPPSGSSPCHNENPQSSSL FYCHLDRP
Subjt:  KK---VPVGFKSNNN---NNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHLDRP

A0A7J6ER19 Uncharacterized protein1.2e-1037.97Show/hide
Query:  LILFFLLISTSSAKTLPHKT-NDVLLRRHRTTLHGGPPTTPRREV--------------DHRHQYY-------TTNKLQMEI-----------KINKSKK
        LILFF+++S+SS  T P K      L    ++L   P TT   EV              ++R  +Y         NK+ M             K  K K 
Subjt:  LILFFLLISTSSAKTLPHKT-NDVLLRRHRTTLHGGPPTTPRREV--------------DHRHQYY-------TTNKLQMEI-----------KINKSKK

Query:  KKKVPVGFKSNNNNNK-----GSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHL
        KKK  +  K    NNK       +FSVMLPKGFVPPSGSSPCHNENP  +S+ F+C L
Subjt:  KKKVPVGFKSNNNNNK-----GSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G18335.1 unknown protein1.8e-0944.58Show/hide
Query:  RREVDHRHQYYTTNKLQMEIKINKSKKKKKVPVGFKSNNNNN---KGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHL
        RR  +H++ YY  + L+    ++      K+    K NN  N   +   FSVMLPKGFVPPSGSSPCHN+NP S++ T +C L
Subjt:  RREVDHRHQYYTTNKLQMEIKINKSKKKKKVPVGFKSNNNNN---KGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTCAAGATTCCTTCCTCAATCTCCCCATCATCACCAAATTACCTTTACTTCTTCCAAATCTCTCTCTCTCTCATTCTCTTCTTTCTCCTAATTTCCACCTCTTC
CGCTAAAACCCTTCCCCACAAAACAAACGACGTATTACTCCGCCGTCACCGGACAACCCTCCACGGCGGCCCACCCACCACCCCACGCCGAGAAGTAGATCATCGACATC
AGTATTACACAACCAACAAATTACAAATGGAGATCAAAATTAACAAGAGCAAGAAGAAAAAGAAGGTCCCGGTGGGATTTAAAAGCAATAATAATAATAATAAGGGAAGT
GCTTTCTCTGTAATGCTCCCAAAGGGATTTGTTCCTCCTTCTGGTTCTTCGCCTTGCCATAACGAAAATCCTCAATCATCTTCTCTTACCTTTTACTGCCATCTTGATCG
GCCTTGA
mRNA sequenceShow/hide mRNA sequence
CCCTCAAATAATATTTCCCCTCTCTCTCTCTCTCTCTCTCTCTCTATCATATGAAAATTTTGGCTCATAGATTGCACACAAAAACAAAAAATAAAATGTAGCCATCACTA
TAACATACAAACCCTTTTCTCTCTATTCTCAAAAGTGAAAATGGGTTTCAAGATTCCTTCCTCAATCTCCCCATCATCACCAAATTACCTTTACTTCTTCCAAATCTCTC
TCTCTCTCATTCTCTTCTTTCTCCTAATTTCCACCTCTTCCGCTAAAACCCTTCCCCACAAAACAAACGACGTATTACTCCGCCGTCACCGGACAACCCTCCACGGCGGC
CCACCCACCACCCCACGCCGAGAAGTAGATCATCGACATCAGTATTACACAACCAACAAATTACAAATGGAGATCAAAATTAACAAGAGCAAGAAGAAAAAGAAGGTCCC
GGTGGGATTTAAAAGCAATAATAATAATAATAAGGGAAGTGCTTTCTCTGTAATGCTCCCAAAGGGATTTGTTCCTCCTTCTGGTTCTTCGCCTTGCCATAACGAAAATC
CTCAATCATCTTCTCTTACCTTTTACTGCCATCTTGATCGGCCTTGATTAATCTTTATCCGTTTCGGCATTATTCTTCAGGTGGGTTTAATTTCAG
Protein sequenceShow/hide protein sequence
MGFKIPSSISPSSPNYLYFFQISLSLILFFLLISTSSAKTLPHKTNDVLLRRHRTTLHGGPPTTPRREVDHRHQYYTTNKLQMEIKINKSKKKKKVPVGFKSNNNNNKGS
AFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHLDRP