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Clc01G25280 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G25280
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionVQ domain-containing protein
Genome locationClcChr01:35520307..35520771
RNA-Seq ExpressionClc01G25280
SyntenyClc01G25280
Gene Ontology termsNA
InterPro domainsIPR008889 - VQ
IPR039608 - VQ motif-containing protein 1/10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052539.1 VQ motif-containing protein 1-like [Cucumis melo var. makuwa]1.4e-2671.29Show/hide
Query:  NSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAENNFNGGRRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWIWT
        N KK A EVRVV+IE HHIQTD SNFKSVVQSLTGK SS  E GGE CRKRQRVVA NN        +S KMI T SFKDLD LL L LPSMEDL+WI T
Subjt:  NSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAENNFNGGRRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWIWT

Query:  D
        D
Subjt:  D

KAG6581431.1 hypothetical protein SDJN03_21433, partial [Cucurbita argyrosperma subsp. sororia]6.3e-2457.69Show/hide
Query:  MANNSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAENNFNGGRRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNW
        MA++    AG V+VV+IE HH+ TDVSNFKSVVQ+LTGK SSAVEGGG +C KR RV  E ++        +   + +TSFKDLD  L LHLP++EDLNW
Subjt:  MANNSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAENNFNGGRRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNW

Query:  IWTD
        IW D
Subjt:  IWTD

KAG7034723.1 hypothetical protein SDJN02_04453, partial [Cucurbita argyrosperma subsp. argyrosperma]3.7e-2457.69Show/hide
Query:  MANNSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAENNFNGGRRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNW
        MA++    AG V+VV+IE HH+ TDVS+FKSVVQ+LTGK SSAVEGGG +CRKR RV  E ++        +   + +TSFKDLD  L LHLP++EDLNW
Subjt:  MANNSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAENNFNGGRRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNW

Query:  IWTD
        IW D
Subjt:  IWTD

KGN49401.1 hypothetical protein Csa_003856 [Cucumis sativus]1.3e-2469.9Show/hide
Query:  NSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVE-GGGESCRKRQRVVAENNFNGG-RRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWI
        NSKK A EVRVV+IE HHIQTD SNFKSVVQSLTGK S A E  GGE CRKRQRVV++NN +       +  KMI T SFKDLD LL L LPSMEDLNWI
Subjt:  NSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVE-GGGESCRKRQRVVAENNFNGG-RRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWI

Query:  WTD
         TD
Subjt:  WTD

XP_038881537.1 VQ motif-containing protein 10-like [Benincasa hispida]1.7e-4081.08Show/hide
Query:  MANNSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAENN-------FNGGRRFEESRKMIPTTSFKDLDGLLGLHLP
        M N+ K    EVRVVVIE HHIQTDVSNFKSVVQSLTGK SSAVEGGGESC+KRQRVVAENN       FN GRR+EESRKMIPTTSFKDLD LL LHLP
Subjt:  MANNSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAENN-------FNGGRRFEESRKMIPTTSFKDLDGLLGLHLP

Query:  SMEDLNWIWTD
        SMEDLNWIWTD
Subjt:  SMEDLNWIWTD

TrEMBL top hitse value%identityAlignment
A0A0A0KNW8 VQ domain-containing protein6.2e-2569.9Show/hide
Query:  NSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVE-GGGESCRKRQRVVAENNFNGG-RRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWI
        NSKK A EVRVV+IE HHIQTD SNFKSVVQSLTGK S A E  GGE CRKRQRVV++NN +       +  KMI T SFKDLD LL L LPSMEDLNWI
Subjt:  NSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVE-GGGESCRKRQRVVAENNFNGG-RRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWI

Query:  WTD
         TD
Subjt:  WTD

A0A5D3CN21 VQ motif-containing protein 1-like6.6e-2771.29Show/hide
Query:  NSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAENNFNGGRRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWIWT
        N KK A EVRVV+IE HHIQTD SNFKSVVQSLTGK SS  E GGE CRKRQRVVA NN        +S KMI T SFKDLD LL L LPSMEDL+WI T
Subjt:  NSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAENNFNGGRRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWIWT

Query:  D
        D
Subjt:  D

A0A6J1CYB0 uncharacterized protein LOC1110157001.7e-1147.57Show/hide
Query:  VRVVVIECHHIQTDVSNFKSVVQSLTG---KKSSAVEG----GGESCRKRQR---VVAENNFNGGRRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWI
        V+VV+IE HH+QTDVSNFKSVVQSLTG   + SSA+       G++ ++R+R     A N          +   + T SFKDLD LL  +LPS++DL+WI
Subjt:  VRVVVIECHHIQTDVSNFKSVVQSLTG---KKSSAVEG----GGESCRKRQR---VVAENNFNGGRRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWI

Query:  WTD
        W D
Subjt:  WTD

A0A6J1EF02 VQ motif-containing protein 10-like1.1e-1656.14Show/hide
Query:  MANNSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAENNFNG-GRRFEESRKMIPT--------TSFKDLDG-LLGL
        MAN+  K AG V+VV IE HHIQTDV+NFKSVVQ+LTG  S+A   GG + +KR+  V EN  +    RFEES +   T        TSF+DLD  LL L
Subjt:  MANNSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAENNFNG-GRRFEESRKMIPT--------TSFKDLDG-LLGL

Query:  HLPSMEDLNWIWTD
         LPSMEDLNWIW D
Subjt:  HLPSMEDLNWIWTD

A0A6J1KT83 VQ motif-containing protein 101.4e-1654.87Show/hide
Query:  MANNSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAENNFNGGRRFEES--------RKMIPTTSFKDLDG-LLGLH
        MAN+  K AG V+VV IE HHIQTDVSNFKSVVQ+LTG  S+A    G + RK+ RV          RFEES           + +TSF+DLD  LL L 
Subjt:  MANNSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAENNFNGGRRFEES--------RKMIPTTSFKDLDG-LLGLH

Query:  LPSMEDLNWIWTD
        LPSMEDLNWIW D
Subjt:  LPSMEDLNWIWTD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G78410.1 VQ motif-containing protein7.8e-0429.66Show/hide
Query:  MANNSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKS----------SAVEG----GGESCRKRQRVVAENNFNGGRRFEESRKMIPTTSFKDLDG
        M+   K  +  ++VV I   +++TD  +FK+VVQ LTGK +          SA +G    GG    +  R +      GGR       M  TT F     
Subjt:  MANNSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKS----------SAVEG----GGESCRKRQRVVAENNFNGGRRFEESRKMIPTTSFKDLDG

Query:  LLGLHLPSMEDLNWIWTD
         L   +P ME+L  +W++
Subjt:  LLGLHLPSMEDLNWIWTD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAATAATTCGAAGAAGGGGGCGGGGGAAGTGAGGGTGGTGGTAATTGAGTGCCACCATATTCAGACCGATGTTTCCAACTTCAAGTCCGTCGTTCAAAGTCTCAC
CGGAAAGAAGTCCTCCGCGGTGGAGGGCGGTGGAGAGAGCTGTAGAAAGAGGCAGCGAGTAGTGGCGGAGAATAATTTTAATGGCGGACGCCGGTTTGAAGAAAGTCGTA
AGATGATCCCCACGACGTCGTTTAAGGATTTGGATGGGTTGCTCGGCCTTCACCTTCCTTCTATGGAGGATCTCAACTGGATTTGGACTGACTAA
mRNA sequenceShow/hide mRNA sequence
CGCAGAAGCATAAAAGGCTTAGAAGAAGAAAATGGCAAATAATTCGAAGAAGGGGGCGGGGGAAGTGAGGGTGGTGGTAATTGAGTGCCACCATATTCAGACCGATGTTT
CCAACTTCAAGTCCGTCGTTCAAAGTCTCACCGGAAAGAAGTCCTCCGCGGTGGAGGGCGGTGGAGAGAGCTGTAGAAAGAGGCAGCGAGTAGTGGCGGAGAATAATTTT
AATGGCGGACGCCGGTTTGAAGAAAGTCGTAAGATGATCCCCACGACGTCGTTTAAGGATTTGGATGGGTTGCTCGGCCTTCACCTTCCTTCTATGGAGGATCTCAACTG
GATTTGGACTGACTAAATCCATTTTCTTTTTTCTCTTTACTCATACATCATTTTTCTTTTCCCAATATCCCTTCTAACATTCTTCATTGGGAATTTTTATTCTTTTTTTT
CTCCGGAAGTATTTTTCTTTTGGTA
Protein sequenceShow/hide protein sequence
MANNSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAENNFNGGRRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWIWTD