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Clc01G25400 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G25400
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionE3 ubiquitin-protein ligase arkadia-A, putative
Genome locationClcChr01:35642331..35642811
RNA-Seq ExpressionClc01G25400
SyntenyClc01G25400
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052530.1 putative E3 ubiquitin-protein ligase arkadia-A [Cucumis melo var. makuwa]1.2e-5896.75Show/hide
Query:  MEDAHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKF
        MED+HKLQNIPSFKLSRYSSSARDSD GDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNES FVGFWERLRIK 
Subjt:  MEDAHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKF

Query:  AALRSRWCDCFHRIFGFFSFALD
        AALRSRWCDCFHRIFGFFSFALD
Subjt:  AALRSRWCDCFHRIFGFFSFALD

KAG7034735.1 hypothetical protein SDJN02_04465, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-5288.33Show/hide
Query:  MEDAHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKF
        M+D HKLQN+PSFKLSRYSS+ RDSD GDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNESCFVGFWERLRIK 
Subjt:  MEDAHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKF

Query:  AALRSRWCDCFHRIFGFFSF
        AALRSRWCDCF R FGFF F
Subjt:  AALRSRWCDCFHRIFGFFSF

XP_022925985.1 uncharacterized protein LOC111433238 [Cucurbita moschata]1.7e-5288.33Show/hide
Query:  MEDAHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKF
        M+D HKLQN+PSFKLSRYSS+ RDSD GDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNESCFVGFWERLRIK 
Subjt:  MEDAHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKF

Query:  AALRSRWCDCFHRIFGFFSF
        AALRSRWCDCF R FGFF F
Subjt:  AALRSRWCDCFHRIFGFFSF

XP_022977989.1 uncharacterized protein LOC111478115 [Cucurbita maxima]5.9e-5388.43Show/hide
Query:  MEDAHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKF
        M+D HKLQN+PSFKLSRYSS+ RDSD GDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNESCFVGFWERLRIK 
Subjt:  MEDAHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKF

Query:  AALRSRWCDCFHRIFGFFSFA
        AALRSRWCDCF R FGFF FA
Subjt:  AALRSRWCDCFHRIFGFFSFA

XP_023544918.1 uncharacterized protein LOC111804374 [Cucurbita pepo subsp. pepo]5.9e-5388.43Show/hide
Query:  MEDAHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKF
        M+D HKLQN+PSFKLSRYSS+ RDSD GDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNESCFVGFWERLRIK 
Subjt:  MEDAHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKF

Query:  AALRSRWCDCFHRIFGFFSFA
        AALRSRWCDCF R FGFF FA
Subjt:  AALRSRWCDCFHRIFGFFSFA

TrEMBL top hitse value%identityAlignment
A0A0A0KKP9 Uncharacterized protein1.1e-5795.12Show/hide
Query:  MEDAHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKF
        MED H+LQNIPSFKLSRYSSSARDSD  DDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNES FVGFWERLRIK 
Subjt:  MEDAHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKF

Query:  AALRSRWCDCFHRIFGFFSFALD
        AALRSRWCDCFHRIFGFFSFALD
Subjt:  AALRSRWCDCFHRIFGFFSFALD

A0A5A7UBK0 Putative E3 ubiquitin-protein ligase arkadia-A5.9e-5996.75Show/hide
Query:  MEDAHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKF
        MED+HKLQNIPSFKLSRYSSSARDSD GDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNES FVGFWERLRIK 
Subjt:  MEDAHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKF

Query:  AALRSRWCDCFHRIFGFFSFALD
        AALRSRWCDCFHRIFGFFSFALD
Subjt:  AALRSRWCDCFHRIFGFFSFALD

A0A6J1CYB8 uncharacterized protein LOC1110157125.4e-4489.62Show/hide
Query:  MEDAHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKF
        + ++HKLQNIPSFKLSRYSS ARDSD GDDLRY SLKDILLNSPSYSGVNDFN+FNSSNISIRNELVKRAASAYLQSAAILVSRNESCFV FWERLR K 
Subjt:  MEDAHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKF

Query:  AALRSR
        AALRSR
Subjt:  AALRSR

A0A6J1EJR7 uncharacterized protein LOC1114332388.3e-5388.33Show/hide
Query:  MEDAHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKF
        M+D HKLQN+PSFKLSRYSS+ RDSD GDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNESCFVGFWERLRIK 
Subjt:  MEDAHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKF

Query:  AALRSRWCDCFHRIFGFFSF
        AALRSRWCDCF R FGFF F
Subjt:  AALRSRWCDCFHRIFGFFSF

A0A6J1ISV4 uncharacterized protein LOC1114781152.9e-5388.43Show/hide
Query:  MEDAHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKF
        M+D HKLQN+PSFKLSRYSS+ RDSD GDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNESCFVGFWERLRIK 
Subjt:  MEDAHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKF

Query:  AALRSRWCDCFHRIFGFFSFA
        AALRSRWCDCF R FGFF FA
Subjt:  AALRSRWCDCFHRIFGFFSFA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52520.1 unknown protein9.2e-0439.33Show/hide
Query:  YTSLKDIL------LNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKFAALRSRWCDCFHRIF
        YTSLKDIL      ++SP+ S     +  +   I+IRN LVK+AA +YLQ +    S N S    F  R+   F  L S + D   RIF
Subjt:  YTSLKDIL------LNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKFAALRSRWCDCFHRIF

AT4G18395.1 unknown protein3.1e-0735.78Show/hide
Query:  DSDPGDDLRYTSLKDILLNS---------PSYSGVND----FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKFAALRSRWCDC
        D +  ++L+YTSLKD++ +S         P YS  +      +E +SSNI+I NELVKRAAS Y+QS+ I+++ + + F  F   L+ K  A+ +   DC
Subjt:  DSDPGDDLRYTSLKDILLNS---------PSYSGVND----FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKFAALRSRWCDC

Query:  FHRIFGFFS
           +   F+
Subjt:  FHRIFGFFS

AT5G06280.1 unknown protein5.4e-0436.9Show/hide
Query:  PGDDLRYTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKFAA
        P   + YTSL+DI+       LN PS +G  +      + +ISIRN LVK+AA +YLQ   +L S ++S    F+ R+ +  +A
Subjt:  PGDDLRYTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKFAA

AT5G06280.3 unknown protein5.4e-0436.9Show/hide
Query:  PGDDLRYTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKFAA
        P   + YTSL+DI+       LN PS +G  +      + +ISIRN LVK+AA +YLQ   +L S ++S    F+ R+ +  +A
Subjt:  PGDDLRYTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKFAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGACGCTCATAAGCTTCAGAACATACCTTCGTTCAAATTGTCCCGTTATTCCTCCAGCGCCAGAGATTCCGATCCCGGCGATGACCTCCGATACACTAGC
TTGAAGGATATTCTTCTGAATTCGCCGTCGTACAGCGGCGTAAATGATTTCAACGAATTCAATTCGTCGAATATTTCGATCCGAAACGAGCTGGTTAAAAGAGCC
GCGTCGGCGTACCTTCAATCGGCGGCGATTTTGGTCAGCCGGAACGAGAGCTGTTTCGTCGGATTCTGGGAGAGGCTTAGGATCAAATTCGCCGCCCTCCGTTCC
CGTTGGTGTGATTGTTTTCACAGGATTTTTGGCTTCTTTAGTTTTGCCCTAGACTAA
mRNA sequenceShow/hide mRNA sequence
AAAAAAAAAAAAGATTGGGTCCAAAACCCGAAAATCCCCTTTAATGGCTACAATCCCATTTCCCTTTGGAAGTTTCCGATATATCTAACAACAACAATGGAAGAC
GCTCATAAGCTTCAGAACATACCTTCGTTCAAATTGTCCCGTTATTCCTCCAGCGCCAGAGATTCCGATCCCGGCGATGACCTCCGATACACTAGCTTGAAGGAT
ATTCTTCTGAATTCGCCGTCGTACAGCGGCGTAAATGATTTCAACGAATTCAATTCGTCGAATATTTCGATCCGAAACGAGCTGGTTAAAAGAGCCGCGTCGGCG
TACCTTCAATCGGCGGCGATTTTGGTCAGCCGGAACGAGAGCTGTTTCGTCGGATTCTGGGAGAGGCTTAGGATCAAATTCGCCGCCCTCCGTTCCCGTTGGTGT
GATTGTTTTCACAGGATTTTTGGCTTCTTTAGTTTTGCCCTAGACTAAGACTAGACCTTCC
Protein sequenceShow/hide protein sequence
MEDAHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKFAALRS
RWCDCFHRIFGFFSFALD