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Clc01G25690 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G25690
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionF-box domain-containing protein
Genome locationClcChr01:35862175..35862736
RNA-Seq ExpressionClc01G25690
SyntenyClc01G25690
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146497.1 F-box protein SKIP19-like isoform X1 [Momordica charantia]2.0e-3166.02Show/hide
Query:  ARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQRFV
        ARNWLELPA++M+TI+LKLGAI+IL+  Q V SSW KICK+P +W VIDMHNLG+L  ++Y+LEIMCMHAV R+RGQL DINIE+FG+D+LL +I++R  
Subjt:  ARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQRFV

Query:  LVP
         +P
Subjt:  LVP

XP_022146498.1 F-box protein SKIP19-like isoform X2 [Momordica charantia]9.7e-3156.45Show/hide
Query:  ARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQRFV
        ARNWLELPA++M+TI+LKLGAI+IL+  Q V SSW KICK+P +W VIDMHNLG+L  ++Y+LEIMCMHAV R+RGQL DINIE+FG+D+LL +I++   
Subjt:  ARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQRFV

Query:  LVPLAAVFICAILSYRPRRHIILK
         +    + +C  +S +     +LK
Subjt:  LVPLAAVFICAILSYRPRRHIILK

XP_022146630.1 F-box protein SKIP19-like [Momordica charantia]3.7e-3063.55Show/hide
Query:  MESNPNMEEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDN
        MESNP   + ARNWLELPADI + ILLKLGAI+ILS  Q+V S WRKICK+PL+W V+DMHN+G    +DYDLE MC+ AV+RS G+L+DINI++FG++ 
Subjt:  MESNPNMEEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDN

Query:  LLLHISQ
        LL +I+Q
Subjt:  LLLHISQ

XP_022146724.1 putative F-box/LRR-repeat protein 23 [Momordica charantia]7.4e-3167.62Show/hide
Query:  SNPNMEEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLL
        SNPN EEPARNWLELPAD  + IL+KLGA+DILS  Q V S WRKIC +PL+W V+DM NL + L +D DLE MCM AV+RS GQLVDINIE FG+D LL
Subjt:  SNPNMEEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLL

Query:  LHISQ
         +I+Q
Subjt:  LHISQ

XP_038883506.1 F-box protein SKIP19-like [Benincasa hispida]7.9e-3366.97Show/hide
Query:  MESNP--NMEEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGS
        MESN     E  ARNWL+LPA++M+ ILLKLGAI+IL+  QNV SSWRKICK+PL+W VIDM N GNL  +D+DLEIMC HAV+RS GQL+DINIE+FG+
Subjt:  MESNP--NMEEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGS

Query:  DNLLLHISQ
        D LL +I+Q
Subjt:  DNLLLHISQ

TrEMBL top hitse value%identityAlignment
A0A6J1CXS5 F-box protein SKIP19-like1.8e-3063.55Show/hide
Query:  MESNPNMEEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDN
        MESNP   + ARNWLELPADI + ILLKLGAI+ILS  Q+V S WRKICK+PL+W V+DMHN+G    +DYDLE MC+ AV+RS G+L+DINI++FG++ 
Subjt:  MESNPNMEEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDN

Query:  LLLHISQ
        LL +I+Q
Subjt:  LLLHISQ

A0A6J1CYR2 F-box protein SKIP19-like isoform X24.7e-3156.45Show/hide
Query:  ARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQRFV
        ARNWLELPA++M+TI+LKLGAI+IL+  Q V SSW KICK+P +W VIDMHNLG+L  ++Y+LEIMCMHAV R+RGQL DINIE+FG+D+LL +I++   
Subjt:  ARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQRFV

Query:  LVPLAAVFICAILSYRPRRHIILK
         +    + +C  +S +     +LK
Subjt:  LVPLAAVFICAILSYRPRRHIILK

A0A6J1CYW9 putative F-box/LRR-repeat protein 233.6e-3167.62Show/hide
Query:  SNPNMEEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLL
        SNPN EEPARNWLELPAD  + IL+KLGA+DILS  Q V S WRKIC +PL+W V+DM NL + L +D DLE MCM AV+RS GQLVDINIE FG+D LL
Subjt:  SNPNMEEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLL

Query:  LHISQ
         +I+Q
Subjt:  LHISQ

A0A6J1CZQ8 F-box protein SKIP19-like isoform X19.5e-3266.02Show/hide
Query:  ARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQRFV
        ARNWLELPA++M+TI+LKLGAI+IL+  Q V SSW KICK+P +W VIDMHNLG+L  ++Y+LEIMCMHAV R+RGQL DINIE+FG+D+LL +I++R  
Subjt:  ARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQRFV

Query:  LVP
         +P
Subjt:  LVP

A0A6P3ZH66 F-box protein SKIP195.2e-3054.76Show/hide
Query:  MESNPN--MEEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGS
        MES+P+   +E  RNWLELP D+ +TIL +LGAI+IL+  QNV SSWR ICK+PL+W  IDM N G+   +DYDLE MC HA++ S GQLVDINIEFFG+
Subjt:  MESNPN--MEEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGS

Query:  DNLLLHISQRFVLVPLAAVFICAILS
        D LL +++ R  +V    +  C  +S
Subjt:  DNLLLHISQRFVLVPLAAVFICAILS

SwissProt top hitse value%identityAlignment
Q9M0U6 Putative F-box/LRR-repeat protein 224.1e-1640.78Show/hide
Query:  EEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIE--FFGSDNLLLHI
        EE   NW ELP D++++ILL+L  ++IL   + V  SWR++ K+PL+W  IDM NL  L  + Y +E  C H V+ S+G L++ NI+   F + +LL ++
Subjt:  EEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIE--FFGSDNLLLHI

Query:  SQR
        ++R
Subjt:  SQR

Q9M0U7 Putative F-box protein At4g054751.3e-1742.57Show/hide
Query:  EEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQ
        +E   NW++LP ++  +ILL+L   DIL   + +  +WR+ICK+P +W  I   NL + L+ ++D E MC H V+ S+G L++INIE F SD+LL +I  
Subjt:  EEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQ

Query:  R
        R
Subjt:  R

Q9M0U9 F-box protein SKIP199.8e-2656.25Show/hide
Query:  NWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQR
        NW ELP ++ + IL +LGAI+IL   Q V  SWR++CK+P +W  IDMHNLG+L  +DY+LEIMC HAV+RS+G LVDI I +FG+ +LL +I+ R
Subjt:  NWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQR

Q9S9V8 Putative F-box/LRR-repeat protein 92.2e-1740.71Show/hide
Query:  RNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDM---HNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQR
        RNW ELP ++ ++ILL+LGAI+IL   Q V  SWR++C++P +W  ID+    NL N + L Y +E +C  AV+ S+G L++INI++  + + L +I+ R
Subjt:  RNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDM---HNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQR

Query:  FVLVPLAAVFICA
           +    V  CA
Subjt:  FVLVPLAAVFICA

Q9S9V9 Putative F-box/LRR-repeat protein 235.0e-2243.56Show/hide
Query:  EEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQ
        ++  RNW ELP+ + ++ILL+LGAI+IL   Q V   W ++CK+P +W  ID+ N  +     YDLE MC HAV+RS G L++I I ++G+++L+++I+ 
Subjt:  EEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQ

Query:  R
        R
Subjt:  R

Arabidopsis top hitse value%identityAlignment
AT4G05460.1 RNI-like superfamily protein6.9e-2756.25Show/hide
Query:  NWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQR
        NW ELP ++ + IL +LGAI+IL   Q V  SWR++CK+P +W  IDMHNLG+L  +DY+LEIMC HAV+RS+G LVDI I +FG+ +LL +I+ R
Subjt:  NWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQR

AT4G05470.1 RNI-like superfamily protein5.0e-1742.86Show/hide
Query:  RNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINI-EFFGSDNLLLHISQR
        RNW++LP ++  +ILL+L   DIL   Q V   WR+ICK+P +W  I   N  + L+ ++D   MC H V+ S+G L++IN+ E F SD+LL +I+ R
Subjt:  RNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINI-EFFGSDNLLLHISQR

AT4G05475.1 RNI-like superfamily protein9.1e-1942.57Show/hide
Query:  EEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQ
        +E   NW++LP ++  +ILL+L   DIL   + +  +WR+ICK+P +W  I   NL + L+ ++D E MC H V+ S+G L++INIE F SD+LL +I  
Subjt:  EEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQ

Query:  R
        R
Subjt:  R

AT4G05490.1 RNI-like superfamily protein2.9e-1740.78Show/hide
Query:  EEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIE--FFGSDNLLLHI
        EE   NW ELP D++++ILL+L  ++IL   + V  SWR++ K+PL+W  IDM NL  L  + Y +E  C H V+ S+G L++ NI+   F + +LL ++
Subjt:  EEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIE--FFGSDNLLLHI

Query:  SQR
        ++R
Subjt:  SQR

AT4G05497.1 RNI-like superfamily protein1.5e-1840.71Show/hide
Query:  RNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDM---HNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQR
        RNW ELP ++ ++ILL+LGAI+IL   Q V  SWR++C++P +W  ID+    NL N + L Y +E +C  AV+ S+G L++INI++  + + L +I+ R
Subjt:  RNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDM---HNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQR

Query:  FVLVPLAAVFICA
           +    V  CA
Subjt:  FVLVPLAAVFICA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCGAACCCTAACATGGAAGAGCCAGCGAGGAACTGGCTTGAACTGCCTGCAGACATCATGAACACGATTCTGCTGAAGCTCGGTGCCATTGATATCCTCTCCTA
CGTCCAAAACGTCTCCTCTTCGTGGCGTAAGATCTGCAAGAACCCTCTCTTGTGGGCCGTCATCGATATGCACAATTTGGGTAATTTATTGGTATTGGACTACGATTTGG
AGATCATGTGCATGCACGCTGTTGAACGTAGTCGTGGTCAATTGGTTGATATCAATATTGAGTTCTTCGGCTCCGATAATTTGCTCCTCCATATCTCCCAGAGGTTTGTG
CTTGTTCCACTCGCTGCTGTTTTTATTTGCGCAATTTTGTCTTATCGGCCAAGACGACACATCATCCTGAAACCTTGTGCAGTGTCACTTGCTGTGATAGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCGAACCCTAACATGGAAGAGCCAGCGAGGAACTGGCTTGAACTGCCTGCAGACATCATGAACACGATTCTGCTGAAGCTCGGTGCCATTGATATCCTCTCCTA
CGTCCAAAACGTCTCCTCTTCGTGGCGTAAGATCTGCAAGAACCCTCTCTTGTGGGCCGTCATCGATATGCACAATTTGGGTAATTTATTGGTATTGGACTACGATTTGG
AGATCATGTGCATGCACGCTGTTGAACGTAGTCGTGGTCAATTGGTTGATATCAATATTGAGTTCTTCGGCTCCGATAATTTGCTCCTCCATATCTCCCAGAGGTTTGTG
CTTGTTCCACTCGCTGCTGTTTTTATTTGCGCAATTTTGTCTTATCGGCCAAGACGACACATCATCCTGAAACCTTGTGCAGTGTCACTTGCTGTGATAGTTTAA
Protein sequenceShow/hide protein sequence
MESNPNMEEPARNWLELPADIMNTILLKLGAIDILSYVQNVSSSWRKICKNPLLWAVIDMHNLGNLLVLDYDLEIMCMHAVERSRGQLVDINIEFFGSDNLLLHISQRFV
LVPLAAVFICAILSYRPRRHIILKPCAVSLAVIV