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Clc01G25700 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G25700
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionF-box protein
Genome locationClcChr01:35862952..35864312
RNA-Seq ExpressionClc01G25700
SyntenyClc01G25700
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PNY10395.1 F-box protein skip19-like [Trifolium pratense]9.9e-0569.23Show/hide
Query:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNL
        LLAILDGCPLLE LD+R CFNL LVG  G +C E+I+ L
Subjt:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNL

XP_003541669.1 F-box protein SKIP19 [Glycine max]5.8e-0565.12Show/hide
Query:  EQLLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL
        E LLAILDGCPLLE LDLR CFN+ L G  G +C E+I+ L L
Subjt:  EQLLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL

XP_013460577.1 putative F-box/LRR-repeat protein 23 [Medicago truncatula]1.2e-0565.85Show/hide
Query:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL
        LLAILDGCPLLE LDLR CF+L+L G  G +C ++++NLCL
Subjt:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL

XP_022146630.1 F-box protein SKIP19-like [Momordica charantia]4.4e-0568.29Show/hide
Query:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL
        L AILDGCP LE LDLR CFNL+LVG  G++C ERI++L L
Subjt:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL

XP_028192114.1 F-box protein SKIP19-like [Glycine soja]5.8e-0565.12Show/hide
Query:  EQLLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL
        E LLAILDGCPLLE LDLR CFN+ L G  G +C E+I+ L L
Subjt:  EQLLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL

TrEMBL top hitse value%identityAlignment
A0A072UYT8 F-box/LRR protein5.7e-0665.85Show/hide
Query:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL
        LLAILDGCPLLE LDLR CF+L+L G  G +C ++++NLCL
Subjt:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL

A0A445I880 F-box protein SKIP192.8e-0565.12Show/hide
Query:  EQLLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL
        E LLAILDGCPLLE LDLR CFN+ L G  G +C E+I+ L L
Subjt:  EQLLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL

A0A6J1CXS5 F-box protein SKIP19-like2.2e-0568.29Show/hide
Query:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL
        L AILDGCP LE LDLR CFNL+LVG  G++C ERI++L L
Subjt:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL

A0A7N2LQ85 Uncharacterized protein1.6e-0557.69Show/hide
Query:  RVNKSPTSHNGEQLLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNL
        R+N +  +++G  L AILDGCP LE LDLR CFN  L G  G +CVERI+NL
Subjt:  RVNKSPTSHNGEQLLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNL

I1M1I2 F-box domain-containing protein2.8e-0565.12Show/hide
Query:  EQLLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL
        E LLAILDGCPLLE LDLR CFN+ L G  G +C E+I+ L L
Subjt:  EQLLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL

SwissProt top hitse value%identityAlignment
Q9M0U6 Putative F-box/LRR-repeat protein 221.0e-0460.53Show/hide
Query:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRN
        L AILDGCP LE LDLR CFN+ L G    +C+ERI++
Subjt:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRN

Q9M0U7 Putative F-box protein At4g054751.0e-0460Show/hide
Query:  LLAILDGCP-LLEHLDLRWCFNLELVGLSGIKCVERIRNL
        L AILDGCP L EHLD+R CFN+ LVG    +C++RI+ L
Subjt:  LLAILDGCP-LLEHLDLRWCFNLELVGLSGIKCVERIRNL

Q9M0U8 Putative F-box/LRR-repeat protein 213.5e-0558.97Show/hide
Query:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNL
        L AILDGCP LEHLD+R CF + LVG    +C+E I+ L
Subjt:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNL

Q9S9V9 Putative F-box/LRR-repeat protein 238.4e-0766.67Show/hide
Query:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNL
        L AILDGCP LEHLDLR CFN+ LVG    +C ERI++L
Subjt:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNL

Arabidopsis top hitse value%identityAlignment
AT4G03630.1 RNI-like superfamily protein1.0e-0764.1Show/hide
Query:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNL
        L AI DGCP LEHLDLR CFN+ LVG    +C+ERI++L
Subjt:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNL

AT4G05470.1 RNI-like superfamily protein2.5e-0658.97Show/hide
Query:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNL
        L AILDGCP LEHLD+R CF + LVG    +C+E I+ L
Subjt:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNL

AT4G05475.1 RNI-like superfamily protein7.3e-0660Show/hide
Query:  LLAILDGCP-LLEHLDLRWCFNLELVGLSGIKCVERIRNL
        L AILDGCP L EHLD+R CFN+ LVG    +C++RI+ L
Subjt:  LLAILDGCP-LLEHLDLRWCFNLELVGLSGIKCVERIRNL

AT4G05490.1 RNI-like superfamily protein7.3e-0660.53Show/hide
Query:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRN
        L AILDGCP LE LDLR CFN+ L G    +C+ERI++
Subjt:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRN

AT5G52480.1 RNI-like superfamily protein2.8e-0561.54Show/hide
Query:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNL
        L AILDGCP LEHLDLR C N  LVG    +C E+I++L
Subjt:  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCCAAGATTTGTAATGAGATCTTGATTTGTAGCCGCCAGTGTAACCTGAACTACATGATGTTGGAATTTCAATCCAATGTAGCATGTGCAATTTCATTCATTTT
TCTTATCTTCATCTTCCGTTTAAGAGTAAACAAATCTCCCACTAGCCATAATGGAGAGCAGCTGCTCGCCATTCTTGATGGTTGTCCTCTCTTAGAACACCTTGATTTAC
GCTGGTGTTTCAATTTAGAATTGGTGGGACTGTCGGGTATAAAATGTGTTGAAAGAATTAGAAATTTATGCCTTGTGATCCCATTAACTTCTCTGAAACTTGGGACGAAA
TTGTTGGTTATGTTGGTGATGATTCTGATGAGAAATTCACCATTGATTTGTCTGACACTGATGACGACAACGACTACTAGGATGAATTCTCAGGGGTCGGTGACTTTTCT
TGTACAGTTCTTTATTTTGATTGACAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCCAAGATTTGTAATGAGATCTTGATTTGTAGCCGCCAGTGTAACCTGAACTACATGATGTTGGAATTTCAATCCAATGTAGCATGTGCAATTTCATTCATTTT
TCTTATCTTCATCTTCCGTTTAAGAGTAAACAAATCTCCCACTAGCCATAATGGAGAGCAGCTGCTCGCCATTCTTGATGGTTGTCCTCTCTTAGAACACCTTGATTTAC
GCTGGTGTTTCAATTTAGAATTGGTGGGACTGTCGGGTATAAAATGTGTTGAAAGAATTAGAAATTTATGCCTTGTGATCCCATTAACTTCTCTGAAACTTGGGACGAAA
TTGTTGGTTATGTTGGTGATGATTCTGATGAGAAATTCACCATTGATTTGTCTGACACTGATGACGACAACGACTACTAGGATGAATTCTCAGGGGTCGGTGACTTTTCT
TGTACAGTTCTTTATTTTGATTGACAGTTAA
Protein sequenceShow/hide protein sequence
MAPKICNEILICSRQCNLNYMMLEFQSNVACAISFIFLIFIFRLRVNKSPTSHNGEQLLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCLVIPLTSLKLGTK
LLVMLVMILMRNSPLICLTLMTTTTTRMNSQGSVTFLVQFFILIDS