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Clc01G25870 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G25870
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr01:36056899..36057879
RNA-Seq ExpressionClc01G25870
SyntenyClc01G25870
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581475.1 hypothetical protein SDJN03_21477, partial [Cucurbita argyrosperma subsp. sororia]1.6e-4679.84Show/hide
Query:  MMIPIKAVAAIVAFLPLIVAIVAALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSSPTPEVALPLPKTMNSSESSGWWTHRDGGDKRLKNALLVATA
        M+IPIK VAA+  FLPLIVA+ +ALEIRPSEHGLEFQS PPAG+KSSPEM+SFF GTSSP P+  LPLPK MNSSE+ GWWTHRDGG+KR++NALLVATA
Subjt:  MMIPIKAVAAIVAFLPLIVAIVAALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSSPTPEVALPLPKTMNSSESSGWWTHRDGGDKRLKNALLVATA

Query:  ACGITGVTLLVGSTLFYIYKNKGL
        ACGITGVTLLVGSTLFYIYK+  L
Subjt:  ACGITGVTLLVGSTLFYIYKNKGL

XP_022925668.1 uncharacterized protein LOC111433017 [Cucurbita moschata]7.2e-4781.97Show/hide
Query:  MMIPIKAVAAIVAFLPLIVAIVAALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSSPTPEVALPLPKTMNSSESSGWWTHRDGGDKRLKNALLVATA
        M+IPIK VAA+V FLPLIVA+ +ALEIRPSEHGLEFQS PPAG+KSSPEM+SFF GTSSP P+  LPLPK MNSSE+ GWWTHRDGG+KR++NALLVATA
Subjt:  MMIPIKAVAAIVAFLPLIVAIVAALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSSPTPEVALPLPKTMNSSESSGWWTHRDGGDKRLKNALLVATA

Query:  ACGITGVTLLVGSTLFYIYKNK
        ACGITGVTLLVGSTLFYIYK K
Subjt:  ACGITGVTLLVGSTLFYIYKNK

XP_022926736.1 uncharacterized protein LOC111433768 [Cucurbita moschata]1.2e-4683.47Show/hide
Query:  MIPIKAVAAIVAFLPLIVAIVAALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSSPTPEVALPLPKTMNSSESSGWWTHRDGGDKRLKNALLVATAA
        MI IK++AA+  +L  IVAI AALEIRPSEHGLEFQS P AGDKSSPEM+SFFGGTSSPTPEVALPLPK MNSSE+ GWWTHRDGGDKRL+NALLVATAA
Subjt:  MIPIKAVAAIVAFLPLIVAIVAALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSSPTPEVALPLPKTMNSSESSGWWTHRDGGDKRLKNALLVATAA

Query:  CGITGVTLLVGSTLFYIYKNK
        CGITGVTLLVGSTL+YI+K K
Subjt:  CGITGVTLLVGSTLFYIYKNK

XP_023003567.1 uncharacterized protein LOC111497130 [Cucurbita maxima]4.7e-4682.64Show/hide
Query:  MIPIKAVAAIVAFLPLIVAIVAALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSSPTPEVALPLPKTMNSSESSGWWTHRDGGDKRLKNALLVATAA
        MI IK++AA+  +L  IVAI AALEIRPSEHGLEFQS P AGDKSSPEM+SFFGGTSSPTPEVALPLPK MNSSE+ GWWTHRDGGDKRL+NALLVATAA
Subjt:  MIPIKAVAAIVAFLPLIVAIVAALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSSPTPEVALPLPKTMNSSESSGWWTHRDGGDKRLKNALLVATAA

Query:  CGITGVTLLVGSTLFYIYKNK
        CG+TGVTLLVGSTL+YI+K K
Subjt:  CGITGVTLLVGSTLFYIYKNK

XP_023518243.1 uncharacterized protein LOC111781779 [Cucurbita pepo subsp. pepo]1.2e-4683.47Show/hide
Query:  MIPIKAVAAIVAFLPLIVAIVAALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSSPTPEVALPLPKTMNSSESSGWWTHRDGGDKRLKNALLVATAA
        MI IK++AA+  +L  IVAI AALEIRPSEHGLEFQS P AGDKSSPEM+SFFGGTSSPTPEVALPLPK MNSSE+ GWWTHRDGGDKRL+NALLVATAA
Subjt:  MIPIKAVAAIVAFLPLIVAIVAALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSSPTPEVALPLPKTMNSSESSGWWTHRDGGDKRLKNALLVATAA

Query:  CGITGVTLLVGSTLFYIYKNK
        CGITGVTLLVGSTL+YI+K K
Subjt:  CGITGVTLLVGSTLFYIYKNK

TrEMBL top hitse value%identityAlignment
A0A0A0KM65 Uncharacterized protein6.6e-4680.99Show/hide
Query:  MIPIKAVAAIVAFLPLIVAIVAALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSSPTPEVALPLPKTMNSSESSGWWTHRDGGDKRLKNALLVATAA
        MIPIK+ AAIVAF  LI +I A  EIRPSEHGLEFQS PP GDKSSPEM+SFFGG +SPTPEVALP+PKT+NSSES GWW H DGG+KRL+NALLVATAA
Subjt:  MIPIKAVAAIVAFLPLIVAIVAALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSSPTPEVALPLPKTMNSSESSGWWTHRDGGDKRLKNALLVATAA

Query:  CGITGVTLLVGSTLFYIYKNK
        CGITGVTLLVGSTLFYI+K K
Subjt:  CGITGVTLLVGSTLFYIYKNK

A0A6J1CZN3 uncharacterized protein LOC1110157294.0e-4378.4Show/hide
Query:  MIPIKAVAAIVAFLPLIVAIVA----ALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSSPTPEVALPLPKTMNSSESSGWWTHRDGGDKRLKNALLV
        MIPIK  AA+   LPLIVA++A    ALEIRPSEHGLEFQS PPAGDKSSPEM SFFGG SSPTP+ ALPLPK MNSSE+ GWWT RDGGD RL+NALLV
Subjt:  MIPIKAVAAIVAFLPLIVAIVA----ALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSSPTPEVALPLPKTMNSSESSGWWTHRDGGDKRLKNALLV

Query:  ATAACGITGVTLLVGSTLFYIYKNK
        ATAA GITGVTLLVGS LFY+YK K
Subjt:  ATAACGITGVTLLVGSTLFYIYKNK

A0A6J1EFQ9 uncharacterized protein LOC1114337685.9e-4783.47Show/hide
Query:  MIPIKAVAAIVAFLPLIVAIVAALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSSPTPEVALPLPKTMNSSESSGWWTHRDGGDKRLKNALLVATAA
        MI IK++AA+  +L  IVAI AALEIRPSEHGLEFQS P AGDKSSPEM+SFFGGTSSPTPEVALPLPK MNSSE+ GWWTHRDGGDKRL+NALLVATAA
Subjt:  MIPIKAVAAIVAFLPLIVAIVAALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSSPTPEVALPLPKTMNSSESSGWWTHRDGGDKRLKNALLVATAA

Query:  CGITGVTLLVGSTLFYIYKNK
        CGITGVTLLVGSTL+YI+K K
Subjt:  CGITGVTLLVGSTLFYIYKNK

A0A6J1EFW4 uncharacterized protein LOC1114330173.5e-4781.97Show/hide
Query:  MMIPIKAVAAIVAFLPLIVAIVAALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSSPTPEVALPLPKTMNSSESSGWWTHRDGGDKRLKNALLVATA
        M+IPIK VAA+V FLPLIVA+ +ALEIRPSEHGLEFQS PPAG+KSSPEM+SFF GTSSP P+  LPLPK MNSSE+ GWWTHRDGG+KR++NALLVATA
Subjt:  MMIPIKAVAAIVAFLPLIVAIVAALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSSPTPEVALPLPKTMNSSESSGWWTHRDGGDKRLKNALLVATA

Query:  ACGITGVTLLVGSTLFYIYKNK
        ACGITGVTLLVGSTLFYIYK K
Subjt:  ACGITGVTLLVGSTLFYIYKNK

A0A6J1KMY3 uncharacterized protein LOC1114971302.3e-4682.64Show/hide
Query:  MIPIKAVAAIVAFLPLIVAIVAALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSSPTPEVALPLPKTMNSSESSGWWTHRDGGDKRLKNALLVATAA
        MI IK++AA+  +L  IVAI AALEIRPSEHGLEFQS P AGDKSSPEM+SFFGGTSSPTPEVALPLPK MNSSE+ GWWTHRDGGDKRL+NALLVATAA
Subjt:  MIPIKAVAAIVAFLPLIVAIVAALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSSPTPEVALPLPKTMNSSESSGWWTHRDGGDKRLKNALLVATAA

Query:  CGITGVTLLVGSTLFYIYKNK
        CG+TGVTLLVGSTL+YI+K K
Subjt:  CGITGVTLLVGSTLFYIYKNK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30515.1 unknown protein5.9e-0737.27Show/hide
Query:  IVAFLPLIVAIVAALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSS-PTPEVALPLPKTMNSSESSGWWT-HRDGGDKRLKN-ALLVATAACGITGV
        I+  + L   I+ A E+RPS+HGLE+   P      S EM SFFG  SS     ++ P    + S+  S   T  +D  D R+ N  L+V +  CG++GV
Subjt:  IVAFLPLIVAIVAALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSS-PTPEVALPLPKTMNSSESSGWWT-HRDGGDKRLKN-ALLVATAACGITGV

Query:  TLLVGSTLFY
         L+V S L Y
Subjt:  TLLVGSTLFY

AT4G21740.1 unknown protein2.3e-1138.66Show/hide
Query:  VAFLPLIVAIVAALEIRPSEHGLEFQ-SAPPAGDKSSP-EMQSFFGG--TSSPTPEVALPLPK--TMNSSESSGWWTHRDGG----DKRLKNALLVATAA
        + FL +      A E+RPS+HGL++Q S+PP    S P +M+SFFG   +SSP P     LPK    +  +   WW  RDG     D  +++  L A+  
Subjt:  VAFLPLIVAIVAALEIRPSEHGLEFQ-SAPPAGDKSSP-EMQSFFGG--TSSPTPEVALPLPK--TMNSSESSGWWTHRDGG----DKRLKNALLVATAA

Query:  CGITGVTLLVGSTLFYIYK
        CG++GV LLV  TL Y ++
Subjt:  CGITGVTLLVGSTLFYIYK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATTCCAATCAAAGCAGTGGCGGCGATCGTCGCCTTTTTGCCATTGATCGTGGCAATCGTGGCAGCGCTGGAGATACGGCCGTCGGAGCACGGTTTGGAGTTTCA
AAGCGCTCCGCCGGCGGGAGACAAATCGTCGCCGGAGATGCAATCGTTTTTCGGAGGAACATCGTCGCCGACACCGGAAGTGGCATTGCCGTTACCGAAGACGATGAATT
CGAGCGAGTCGTCGGGATGGTGGACCCACCGCGACGGTGGAGATAAACGACTTAAAAATGCATTATTGGTGGCAACGGCGGCTTGTGGAATTACAGGTGTCACTTTATTA
GTGGGTTCTACGTTATTCTACATTTATAAGAACAAAGGATTGCCGGGACAGATGGATATTGATTTAACTATGATCTTGATGAAAGCTGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGATTCCAATCAAAGCAGTGGCGGCGATCGTCGCCTTTTTGCCATTGATCGTGGCAATCGTGGCAGCGCTGGAGATACGGCCGTCGGAGCACGGTTTGGAGTTTCA
AAGCGCTCCGCCGGCGGGAGACAAATCGTCGCCGGAGATGCAATCGTTTTTCGGAGGAACATCGTCGCCGACACCGGAAGTGGCATTGCCGTTACCGAAGACGATGAATT
CGAGCGAGTCGTCGGGATGGTGGACCCACCGCGACGGTGGAGATAAACGACTTAAAAATGCATTATTGGTGGCAACGGCGGCTTGTGGAATTACAGGTGTCACTTTATTA
GTGGGTTCTACGTTATTCTACATTTATAAGAACAAAGGATTGCCGGGACAGATGGATATTGATTTAACTATGATCTTGATGAAAGCTGGTTAA
Protein sequenceShow/hide protein sequence
MMIPIKAVAAIVAFLPLIVAIVAALEIRPSEHGLEFQSAPPAGDKSSPEMQSFFGGTSSPTPEVALPLPKTMNSSESSGWWTHRDGGDKRLKNALLVATAACGITGVTLL
VGSTLFYIYKNKGLPGQMDIDLTMILMKAG