; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G26265 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G26265
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibosome biogenesis protein
Genome locationClcChr01:36360055..36361353
RNA-Seq ExpressionClc01G26265
SyntenyClc01G26265
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0030686 - 90S preribosome (cellular component)
GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589685.1 hypothetical protein SDJN03_15108, partial [Cucurbita argyrosperma subsp. sororia]1.3e-2176.92Show/hide
Query:  LKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEELKKKKRNINGSKKRKEEKLRASARPSPMEM
        LKVNCKSRLKF+LKE KQM  VL HP FQADPLG+I LHLE+TQPVEE KKKK N NGSKKRKE+K +A+A+PS MEM
Subjt:  LKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEELKKKKRNINGSKKRKEEKLRASARPSPMEM

XP_022922102.1 putative ribosome biogenesis protein slx9-like [Cucurbita moschata]2.8e-2175.64Show/hide
Query:  LKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEELKKKKRNINGSKKRKEEKLRASARPSPMEM
        LKVNCKSRLKF+LKE KQM  VL HP FQADPLG+I LHL++TQPVEE KKKK N NGSKKRKE+K +A+A+PS MEM
Subjt:  LKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEELKKKKRNINGSKKRKEEKLRASARPSPMEM

XP_022987345.1 putative ribosome biogenesis protein slx9-like [Cucurbita maxima]1.3e-2176.92Show/hide
Query:  LKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEELKKKKRNINGSKKRKEEKLRASARPSPMEM
        LKVNCKSRLKF+LKE KQM  VL HP FQADPLG+I LHLE+TQPVEE KKKK N NGSKKRKE+K +A+A+PS MEM
Subjt:  LKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEELKKKKRNINGSKKRKEEKLRASARPSPMEM

XP_023515417.1 putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo]2.2e-2176.92Show/hide
Query:  LKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEELKKKKRNINGSKKRKEEKLRASARPSPMEM
        LKVNCKSRLKF+LKE KQM  VL HP FQADPLG+I LHLE+TQPVEE KKKK N NGSKKRKE+K +A+A+PS MEM
Subjt:  LKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEELKKKKRNINGSKKRKEEKLRASARPSPMEM

XP_038881620.1 uncharacterized protein LOC120073082 [Benincasa hispida]5.2e-2370.3Show/hide
Query:  LHDGFPKLCQTAQKQLKISMPKSLKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEELKKKKRNINGSKKRKEEKLRASARPSPME
        L +  P L  + QK    S  K LKV+CKSRLKFIL+E KQ+VRVL HPKF ADPLGSIQ HLE  QP+EEL KKKRNINGSKKRKEEK +ASARPS ME
Subjt:  LHDGFPKLCQTAQKQLKISMPKSLKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEELKKKKRNINGSKKRKEEKLRASARPSPME

Query:  M
        M
Subjt:  M

TrEMBL top hitse value%identityAlignment
A0A0A0L113 Uncharacterized protein6.8e-2164.36Show/hide
Query:  LHDGFPKLCQTAQKQLKISMPKSLKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEELKKKKRNINGSKKRKEEKLRASARPSPME
        L +  P L  T QK         LK+NCKSRLKFILKE KQM  VL HP FQADPL ++QLHLE TQP+EE KKKK N NGSKKRKE+K +ASA+PS ME
Subjt:  LHDGFPKLCQTAQKQLKISMPKSLKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEELKKKKRNINGSKKRKEEKLRASARPSPME

Query:  M
        M
Subjt:  M

A0A5A7V4K7 Putative ribosome biogenesis protein slx9-like2.6e-2064.36Show/hide
Query:  LHDGFPKLCQTAQKQLKISMPKSLKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEELKKKKRNINGSKKRKEEKLRASARPSPME
        L +  P L  T QK         LK+NCKSRLKFILKE KQM  VL HP FQADPL ++QLHLE TQP+EE KKKK N NGSKKRKE+K +A ARPS ME
Subjt:  LHDGFPKLCQTAQKQLKISMPKSLKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEELKKKKRNINGSKKRKEEKLRASARPSPME

Query:  M
        M
Subjt:  M

A0A5D3BQL6 Putative ribosome biogenesis protein slx9-like1.4e-2166.34Show/hide
Query:  LHDGFPKLCQTAQKQLKISMPKSLKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEELKKKKRNINGSKKRKEEKLRASARPSPME
        L +  P L  T QK         LK+NCKSRLKFILKE KQM  VL HP FQADPL ++QLHLE TQP EE KKKK N NGSKKRKE+KL+ASARPS ME
Subjt:  LHDGFPKLCQTAQKQLKISMPKSLKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEELKKKKRNINGSKKRKEEKLRASARPSPME

Query:  M
        M
Subjt:  M

A0A6J1E5M8 putative ribosome biogenesis protein slx9-like1.4e-2175.64Show/hide
Query:  LKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEELKKKKRNINGSKKRKEEKLRASARPSPMEM
        LKVNCKSRLKF+LKE KQM  VL HP FQADPLG+I LHL++TQPVEE KKKK N NGSKKRKE+K +A+A+PS MEM
Subjt:  LKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEELKKKKRNINGSKKRKEEKLRASARPSPMEM

A0A6J1JDX4 putative ribosome biogenesis protein slx9-like6.2e-2276.92Show/hide
Query:  LKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEELKKKKRNINGSKKRKEEKLRASARPSPMEM
        LKVNCKSRLKF+LKE KQM  VL HP FQADPLG+I LHLE+TQPVEE KKKK N NGSKKRKE+K +A+A+PS MEM
Subjt:  LKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEELKKKKRNINGSKKRKEEKLRASARPSPMEM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01640.1 unknown protein1.3e-1158.21Show/hide
Query:  LKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQ-PVEELKKKKRNINGSKKRKEEK
        LK+NCK R K +L E +++ +VL HP FQADP+GSI  HL + Q PVEE  KKK N NGSKKR ++K
Subjt:  LKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQ-PVEELKKKKRNINGSKKRKEEK

AT2G01640.2 unknown protein1.3e-1158.21Show/hide
Query:  LKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQ-PVEELKKKKRNINGSKKRKEEK
        LK+NCK R K +L E +++ +VL HP FQADP+GSI  HL + Q PVEE  KKK N NGSKKR ++K
Subjt:  LKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQ-PVEELKKKKRNINGSKKRKEEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCCACTGAAAGCAGGTTACAAGGCACTTGAACTTATAGAACGCGACATCCTCACTCAAAGTCAAAATTCATCCTCCTGTTTTCGTCTGCATGATGGATTCCCTAA
ACTATGTCAAACTGCGCAAAAGCAATTAAAGATCAGCATGCCAAAGTCGTTGAAAGTAAATTGCAAGTCTAGGCTAAAGTTTATATTGAAGGAATTAAAGCAAATGGTTA
GAGTTCTTAGACACCCTAAATTCCAGGCAGACCCCTTGGGATCTATACAACTACATTTAGAGGCCACACAACCAGTTGAGGAACTGAAGAAAAAGAAGAGGAATATAAAT
GGGAGCAAGAAAAGGAAAGAGGAGAAGTTGAGAGCCTCTGCAAGACCTTCTCCTATGGAGATGTGA
mRNA sequenceShow/hide mRNA sequence
CTTTTTCTAGACTGGACAGTTGGTAGATTCTTTCAACAGTTCCCCAACAGGGCATTCATCAATACATAAGGTTATTAATTGGTATGCTCCATATTTGTCTATGAATCCAC
TGAAAGCAGGTTACAAGGCACTTGAACTTATAGAACGCGACATCCTCACTCAAAGTCAAAATTCATCCTCCTGTTTTCGTCTGCATGATGGATTCCCTAAACTATGTCAA
ACTGCGCAAAAGCAATTAAAGATCAGCATGCCAAAGTCGTTGAAAGTAAATTGCAAGTCTAGGCTAAAGTTTATATTGAAGGAATTAAAGCAAATGGTTAGAGTTCTTAG
ACACCCTAAATTCCAGGCAGACCCCTTGGGATCTATACAACTACATTTAGAGGCCACACAACCAGTTGAGGAACTGAAGAAAAAGAAGAGGAATATAAATGGGAGCAAGA
AAAGGAAAGAGGAGAAGTTGAGAGCCTCTGCAAGACCTTCTCCTATGGAGATGTGACTGATCTCTCACAACCCTTGTCAGTTGTAGCTTGGTGAATACATTTATGGGCAT
TTTAATTGGTAGAACAGTTCAGCTCCCTTGAGCTCTAAATTCCTCCTTCCTTTGGTAGCTATAGGAGGAATCTCTTTTGATTCCAGGACATGATTATTGTTGATGAAGCA
ATTGTTCAACTAGTAATGTTCCATAAGATTATACATTTTCTAACTATTTTAGATATTCTAATCAATCCACAGTTAACATTGTGA
Protein sequenceShow/hide protein sequence
MNPLKAGYKALELIERDILTQSQNSSSCFRLHDGFPKLCQTAQKQLKISMPKSLKVNCKSRLKFILKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEELKKKKRNIN
GSKKRKEEKLRASARPSPMEM