; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G26400 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G26400
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr01:36480455..36481264
RNA-Seq ExpressionClc01G26400
SyntenyClc01G26400
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7026395.1 hypothetical protein SDJN02_10395, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-4782.68Show/hide
Query:  MTQMWLLWWPKN-NASAKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQF
        M QMWLLWWPKN +A+AKT+TSS + AVTATS+A K SSSHCN +AKLLRKLKKR RVLCSTTGESSS+ FQCRYDPLSYSLNFDTSGCGSLLDEHYYQF
Subjt:  MTQMWLLWWPKN-NASAKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQF

Query:  CAFSSRFASNPGNVSHSAPHVTVTTSR
        CAFSSRFASNPG VS  AP  TVT SR
Subjt:  CAFSSRFASNPGNVSHSAPHVTVTTSR

XP_022146664.1 uncharacterized protein LOC111015812 [Momordica charantia]7.6e-4882.81Show/hide
Query:  MTQMWLLWWPKN-NASAKTATSSTSGAVTATSVARKPS-SSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQ
        MTQMWLLWWPK  +A  KT TSS + AVTATS+A+K S SSHCNCVAKLLRKLKKR RVLCST+GE  SSAFQCRYDPLSYSLNFDTSGCGSLLDE YYQ
Subjt:  MTQMWLLWWPKN-NASAKTATSSTSGAVTATSVARKPS-SSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQ

Query:  FCAFSSRFASNPGNVSHSAPHVTVTTSR
        FCAFSSRFASNPGN SHS P VTVT SR
Subjt:  FCAFSSRFASNPGNVSHSAPHVTVTTSR

XP_022925663.1 uncharacterized protein LOC111433012 [Cucurbita moschata]2.6e-4884.55Show/hide
Query:  MWLLWWPKNNASAKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFS
        MWLLWWPKNNASA   T ++S AVTATS+ARK SSS+CNC AKLLRKLKKRSRVL ST GESSS+ FQCRYDPLSYSLNFDTSGCG LLDEHYYQ+CAFS
Subjt:  MWLLWWPKNNASAKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFS

Query:  SRFASNPGNVSHSAPHVTVTTSR
        SRFASNPGNVSHSAP  TVTTSR
Subjt:  SRFASNPGNVSHSAPHVTVTTSR

XP_023518962.1 uncharacterized protein LOC111782330 [Cucurbita pepo subsp. pepo]2.6e-4883.46Show/hide
Query:  MTQMWLLWWPKN-NASAKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQF
        M QMWLLWWPKN +A+AKT+TSS +GAVTATS+A K SSSHCN +AKLLRKLKKR RVLCSTTGESSS+ FQCRYDPLSYSLNFDTSGCGSLLDEHYYQF
Subjt:  MTQMWLLWWPKN-NASAKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQF

Query:  CAFSSRFASNPGNVSHSAPHVTVTTSR
        CAFSSRFASNPG VS  AP  TVT SR
Subjt:  CAFSSRFASNPGNVSHSAPHVTVTTSR

XP_023543928.1 uncharacterized protein LOC111803650 [Cucurbita pepo subsp. pepo]3.4e-4887.2Show/hide
Query:  MWLLWWPKNNAS--AKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCA
        MWLLWWPKNNAS  AKT TSS S AVTATS+ARK SSS+CNC AKLLRKLKKRSRVL ST GESSS+ FQCRYDPLSYSLNFDTSGCG LLDEHYYQ+CA
Subjt:  MWLLWWPKNNAS--AKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCA

Query:  FSSRFASNPGNVSHSAPHVTVTTSR
        FSSRFASNPGNVSHSAP VTVTTSR
Subjt:  FSSRFASNPGNVSHSAPHVTVTTSR

TrEMBL top hitse value%identityAlignment
A0A6J1CYQ9 uncharacterized protein LOC1110158123.7e-4882.81Show/hide
Query:  MTQMWLLWWPKN-NASAKTATSSTSGAVTATSVARKPS-SSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQ
        MTQMWLLWWPK  +A  KT TSS + AVTATS+A+K S SSHCNCVAKLLRKLKKR RVLCST+GE  SSAFQCRYDPLSYSLNFDTSGCGSLLDE YYQ
Subjt:  MTQMWLLWWPKN-NASAKTATSSTSGAVTATSVARKPS-SSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQ

Query:  FCAFSSRFASNPGNVSHSAPHVTVTTSR
        FCAFSSRFASNPGN SHS P VTVT SR
Subjt:  FCAFSSRFASNPGNVSHSAPHVTVTTSR

A0A6J1EF60 uncharacterized protein LOC1114336471.8e-4781.89Show/hide
Query:  MTQMWLLWWPKN-NASAKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQF
        M QMWLLWWPKN +A+AKT+TSS + AVTATS+A K SSSHCN +AKLLRKLKKR RVLCSTTGESSS+ FQCRYDPLSYSLNFDTSGCGSLLDEHYYQF
Subjt:  MTQMWLLWWPKN-NASAKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQF

Query:  CAFSSRFASNPGNVSHSAPHVTVTTSR
        C FSSRFASNPG VS  AP  TVT SR
Subjt:  CAFSSRFASNPGNVSHSAPHVTVTTSR

A0A6J1EFV9 uncharacterized protein LOC1114330121.3e-4884.55Show/hide
Query:  MWLLWWPKNNASAKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFS
        MWLLWWPKNNASA   T ++S AVTATS+ARK SSS+CNC AKLLRKLKKRSRVL ST GESSS+ FQCRYDPLSYSLNFDTSGCG LLDEHYYQ+CAFS
Subjt:  MWLLWWPKNNASAKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFS

Query:  SRFASNPGNVSHSAPHVTVTTSR
        SRFASNPGNVSHSAP  TVTTSR
Subjt:  SRFASNPGNVSHSAPHVTVTTSR

A0A6J1IQV7 uncharacterized protein LOC1114776132.4e-4783.74Show/hide
Query:  MWLLWWPKNNASAKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFS
        MWLLWWPKNNAS+   T ++S AVTATS+ARK SSS+ NC AKLLRKLKKRSRVL ST GESSS+ FQCRYDPLSYSLNFDTSGCG LLDEHYYQ+CAFS
Subjt:  MWLLWWPKNNASAKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFS

Query:  SRFASNPGNVSHSAPHVTVTTSR
        SRFASNPGNVSHSAP VTVTTSR
Subjt:  SRFASNPGNVSHSAPHVTVTTSR

A0A6J1KS95 uncharacterized protein LOC1114971674.1e-4781.1Show/hide
Query:  MTQMWLLWWPKN-NASAKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQF
        M QMWLLWWPKN +A+AK++T S +GAV+ATS+A K SSSHCN +AKLLRKLKKR RVLCSTTGESSS+ FQCRYDPLSYSLNFDTSGCGSLLDEHYYQF
Subjt:  MTQMWLLWWPKN-NASAKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQF

Query:  CAFSSRFASNPGNVSHSAPHVTVTTSR
        CAFSSRFASNPG VS  AP  TVT SR
Subjt:  CAFSSRFASNPGNVSHSAPHVTVTTSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G19980.1 unknown protein1.1e-1545.1Show/hide
Query:  SSTSGAVTATSVARKPSSSHC-NCVAKLLRKLKKRSRVLCST-TGESSSSAFQCRYDPLSYSLNFDTSGCGSLLD--EHYYQFCAFSSRFASNPGNVSHS
        ++T+ AVT  S    P+ + C  C+A+L+RKLKK+ R+L +T T     S+ QCRYDP+SYSLNFD   CG+L D  ++Y +F AFSSR+ +   N+   
Subjt:  SSTSGAVTATSVARKPSSSHC-NCVAKLLRKLKKRSRVLCST-TGESSSSAFQCRYDPLSYSLNFDTSGCGSLLD--EHYYQFCAFSSRFASNPGNVSHS

Query:  AP
         P
Subjt:  AP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGCAAATGTGGCTTCTCTGGTGGCCGAAGAACAACGCCTCCGCCAAAACTGCCACTTCCTCCACCTCCGGCGCCGTTACTGCTACTTCCGTCGCCCGGAAGCCATC
CTCCTCCCACTGCAACTGCGTCGCCAAGCTGTTGCGCAAACTGAAGAAACGCAGCAGAGTACTGTGTAGCACCACCGGAGAGAGCAGCAGCAGCGCCTTCCAATGCCGCT
ACGATCCTTTGAGCTACTCTCTCAATTTCGACACCAGCGGCTGCGGAAGCTTGTTAGATGAACATTACTATCAGTTCTGCGCTTTCTCTTCCAGATTCGCGTCCAATCCA
GGAAATGTTTCTCATTCTGCTCCCCACGTAACAGTCACTACTTCTCGCTAG
mRNA sequenceShow/hide mRNA sequence
CGTGGAGGACGCGTGAGTTCCTAGAGAGGGAGGGAATAAGTAATAAAAGAAAAGAAGCCGTCCCTTTTCTTTTAAATCTTTGATAACCACGCTGAGGCTGAGATCCAAAG
GCAGAGTCCATCCTCACGCGCCATCTTAGACGCGTGAAGTACACCTTCCCACTTCCCTACATAAATCAACCAAACTAAACAGAGTTGAAAGTGGTAAGTAGTAACCAAAC
CATCTCCACCTTCCAATTTCCACCACATTTCGCCGGTTCAAACTCACATGACGCAAATGTGGCTTCTCTGGTGGCCGAAGAACAACGCCTCCGCCAAAACTGCCACTTCC
TCCACCTCCGGCGCCGTTACTGCTACTTCCGTCGCCCGGAAGCCATCCTCCTCCCACTGCAACTGCGTCGCCAAGCTGTTGCGCAAACTGAAGAAACGCAGCAGAGTACT
GTGTAGCACCACCGGAGAGAGCAGCAGCAGCGCCTTCCAATGCCGCTACGATCCTTTGAGCTACTCTCTCAATTTCGACACCAGCGGCTGCGGAAGCTTGTTAGATGAAC
ATTACTATCAGTTCTGCGCTTTCTCTTCCAGATTCGCGTCCAATCCAGGAAATGTTTCTCATTCTGCTCCCCACGTAACAGTCACTACTTCTCGCTAGCGCCATCTCAAT
CCCTACCATTTTTCTTTCCCCTTTCTGTATCCATCTTTAAACCTGTATGCCAATTTGCTACATTAGGTTGATTTTGATTTATATAATATAAATATATACGGTTCAAGAAT
TTCAGAGAGGGCAAAAGCAGATTAAGAACGAATTTACATC
Protein sequenceShow/hide protein sequence
MTQMWLLWWPKNNASAKTATSSTSGAVTATSVARKPSSSHCNCVAKLLRKLKKRSRVLCSTTGESSSSAFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNP
GNVSHSAPHVTVTTSR