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Clc01G26580 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G26580
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptioncytochrome c6, chloroplastic
Genome locationClcChr01:36608752..36612567
RNA-Seq ExpressionClc01G26580
SyntenyClc01G26580
Gene Ontology termsGO:0022900 - electron transport chain (biological process)
GO:0005506 - iron ion binding (molecular function)
GO:0009055 - electron transfer activity (molecular function)
GO:0020037 - heme binding (molecular function)
InterPro domainsIPR009056 - Cytochrome c-like domain
IPR023655 - Cytochrome c6
IPR036909 - Cytochrome c-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134523.1 cytochrome c6, chloroplastic [Cucumis sativus]3.7e-7584.3Show/hide
Query:  QMHLLSVTSNFC---PTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPG
        +MHLLSVTS+F     +P+CFP  GKRR  VCQIRTQVKILK L PPLIA+L+ LSPLN T GC  L LA+T EIERGGALFNQ+CIGCHDGGGNIIQPG
Subjt:  QMHLLSVTSNFC---PTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPG

Query:  ATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
        ATLFSSDLERNGADAEEEIYRITY GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
Subjt:  ATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP

XP_008439440.1 PREDICTED: cytochrome c6, chloroplastic [Cucumis melo]1.1e-7684.8Show/hide
Query:  MHLLSVTSNF---CPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGA
        M LLSVTS+F     +PH FP+ G RR  VCQIRT VKIL+TL PPLIA+L+ LSPLN TPGC  L LA+T EIERGGALFNQACIGCHDGGGNIIQPGA
Subjt:  MHLLSVTSNF---CPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGA

Query:  TLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
        TLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
Subjt:  TLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP

XP_022926876.1 cytochrome c6, chloroplastic [Cucurbita moschata]1.1e-7685.12Show/hide
Query:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLF
        M  LSVTS+F  +PHCFP+K +RR AVCQ+R QVKILKTL PPLIAVLIAL PLN TPGC   ALAQ+AEIERGGALF+ ACIGCHD GGNIIQPGATLF
Subjt:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLF

Query:  SSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
        SSDLERNGAD+EEEIY+ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Subjt:  SSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP

XP_023517564.1 cytochrome c6, chloroplastic [Cucurbita pepo subsp. pepo]5.7e-7684.52Show/hide
Query:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLF
        M  LSVTS+F  +PHCFP+K +RR AVCQ+R QV ILKTL PPLIAVLIAL PLN TPGC   ALAQ+AEIERGGALF+ ACIGCHD GGNIIQPGATLF
Subjt:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLF

Query:  SSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
        SSDLERNGAD+EEEIY+ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Subjt:  SSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP

XP_038877732.1 cytochrome c6, chloroplastic [Benincasa hispida]5.1e-8591.67Show/hide
Query:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLF
        MHLLS TSNFCPTPHCFP+K KRR  VCQIRTQVKIL +L PPLIAV +ALSPLN TPGC  LALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLF
Subjt:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLF

Query:  SSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
        SSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVK+QADRGWPNP
Subjt:  SSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP

TrEMBL top hitse value%identityAlignment
A0A0A0KPD1 Cytochrome c domain-containing protein1.5e-6988Show/hide
Query:  VKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRI
        + GKRR  VCQIRTQVKILK L PPLIA+L+ LSPLN T GC  L LA+T EIERGGALFNQ+CIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRI
Subjt:  VKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRI

Query:  TYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
        TY GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
Subjt:  TYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP

A0A1S3AYD3 cytochrome c6, chloroplastic5.6e-7784.8Show/hide
Query:  MHLLSVTSNF---CPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGA
        M LLSVTS+F     +PH FP+ G RR  VCQIRT VKIL+TL PPLIA+L+ LSPLN TPGC  L LA+T EIERGGALFNQACIGCHDGGGNIIQPGA
Subjt:  MHLLSVTSNF---CPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGA

Query:  TLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
        TLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
Subjt:  TLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP

A0A6J1CXZ2 cytochrome c6, chloroplastic7.8e-7179.88Show/hide
Query:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIR-TQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATL
        MHLLS  S+F    HCF +KG+R  AVCQ R  Q+KI K+  PPLIAVLIALSP+  TPGC    LAQT EIERGGALF+Q+CIGCHDGGGNIIQPGATL
Subjt:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIR-TQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATL

Query:  FSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
        FSSDLERNGAD EEEIY ITYYGKGRMPGFGENCKPRGQCTFGPRLQE+EIRLLAKFVKIQADRGW NP
Subjt:  FSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP

A0A6J1EG38 cytochrome c6, chloroplastic5.6e-7785.12Show/hide
Query:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLF
        M  LSVTS+F  +PHCFP+K +RR AVCQ+R QVKILKTL PPLIAVLIAL PLN TPGC   ALAQ+AEIERGGALF+ ACIGCHD GGNIIQPGATLF
Subjt:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLF

Query:  SSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
        SSDLERNGAD+EEEIY+ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Subjt:  SSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP

A0A6J1KPJ4 cytochrome c6, chloroplastic1.5e-7482.74Show/hide
Query:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLF
        M LLSV S+F  +PHCF +K +RR  VC++R QVK LK L PPLIAVLIAL PLN TPGC   ALAQ+AEIERGGALF+ ACIGCHDGGGNIIQPGATLF
Subjt:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLF

Query:  SSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
        SSDLERNGAD+EEEIY+ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Subjt:  SSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP

SwissProt top hitse value%identityAlignment
P00110 Cytochrome c67.4e-1037.76Show/hide
Query:  AEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEI-YRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGW
        A+IE G  +F   C  CH GG N+I P  TL    LE NG +A   I Y++T  GK  MP             FG RL + +I  +A +V  Q+++GW
Subjt:  AEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEI-YRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGW

P07497 Cytochrome c68.7e-1133.98Show/hide
Query:  LALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQAD
        +A AQ A++  GG +F+  C  CH GG N++ P  TL  +DL++ G  + E I      GKG MP FG             +L  ++I  +A +V  Q++
Subjt:  LALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQAD

Query:  RGW
        +GW
Subjt:  RGW

P0A3X9 Cytochrome c63.7e-0930.56Show/hide
Query:  KRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYY
        KR I+VC I              IA+L++L+P            A  A++  G  +F+  C  CH GGGN++    TL    LE+ G  +E+ I     +
Subjt:  KRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYY

Query:  GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGW
        GK  MP             F  RL +E+I+ +A +V  QA +GW
Subjt:  GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGW

P25935 Cytochrome c68.7e-1133.98Show/hide
Query:  LALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQAD
        +A AQ A++  GG +F+  C  CH GG N++ P  TL  +DL++ G  + E I      GKG MP FG             +L  ++I  +A +V  Q++
Subjt:  LALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQAD

Query:  RGW
        +GW
Subjt:  RGW

Q93VA3 Cytochrome c6, chloroplastic1.3e-5172.52Show/hide
Query:  ILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKP
        +LK L PPL AVL+A+SP+   P  LG    QT +I+RG  LFN+ACIGCHD GGNIIQPGATLF+ DLERNG D EEEIYR+TY+GKGRMPGFGE C P
Subjt:  ILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKP

Query:  RGQCTFGPRLQEEEIRLLAKFVKIQADRGWP
        RGQCTFGPRLQ+EEI+LLA+FVK QAD+GWP
Subjt:  RGQCTFGPRLQEEEIRLLAKFVKIQADRGWP

Arabidopsis top hitse value%identityAlignment
AT5G45040.1 Cytochrome c9.4e-5372.52Show/hide
Query:  ILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKP
        +LK L PPL AVL+A+SP+   P  LG    QT +I+RG  LFN+ACIGCHD GGNIIQPGATLF+ DLERNG D EEEIYR+TY+GKGRMPGFGE C P
Subjt:  ILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKP

Query:  RGQCTFGPRLQEEEIRLLAKFVKIQADRGWP
        RGQCTFGPRLQ+EEI+LLA+FVK QAD+GWP
Subjt:  RGQCTFGPRLQEEEIRLLAKFVKIQADRGWP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGATGGGACGAAGTTTTCTTGCAGAAAAACAAAGGATGAATTGGAGCGGAGCACTGTTTGTCCGACCCGCTTATCACTTTGGATTGGACAGCCACAGCCTAATTG
GAGTTTGGGGCAGCAGGCACGGCAGCCACAGGCACATCCAAGAGTCCAAGACCCGCCAAAGCGCAGAGAGCCCGCCCGCGTCACGGCGTCAGAGACGAAGGAGATCCAGA
TGCATCTTCTCTCCGTAACTTCAAATTTTTGCCCTACTCCCCATTGCTTCCCTGTTAAGGGAAAGCGACGGATTGCAGTTTGTCAAATTCGTACACAAGTTAAGATTCTC
AAGACCCTGCCTCCCCCTCTCATTGCGGTGCTTATAGCATTATCTCCCCTCAACAACACCCCAGGATGTCTTGGTCTTGCACTTGCCCAAACGGCAGAAATAGAAAGAGG
AGGTGCATTGTTTAATCAAGCTTGCATTGGCTGCCATGATGGAGGGGGAAACATAATTCAGCCCGGTGCAACACTCTTTTCAAGTGATCTTGAAAGAAATGGAGCTGATG
CCGAAGAGGAGATCTACCGTATTACATATTATGGGAAAGGAAGAATGCCTGGTTTTGGTGAGAACTGTAAGCCAAGGGGTCAATGCACATTTGGTCCCCGTTTGCAGGAG
GAAGAAATTAGGCTTTTGGCGAAGTTTGTAAAGATACAGGCAGATCGGGGGTGGCCTAACCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAGATGGGACGAAGTTTTCTTGCAGAAAAACAAAGGATGAATTGGAGCGGAGCACTGTTTGTCCGACCCGCTTATCACTTTGGATTGGACAGCCACAGCCTAATTG
GAGTTTGGGGCAGCAGGCACGGCAGCCACAGGCACATCCAAGAGTCCAAGACCCGCCAAAGCGCAGAGAGCCCGCCCGCGTCACGGCGTCAGAGACGAAGGAGATCCAGA
TGCATCTTCTCTCCGTAACTTCAAATTTTTGCCCTACTCCCCATTGCTTCCCTGTTAAGGGAAAGCGACGGATTGCAGTTTGTCAAATTCGTACACAAGTTAAGATTCTC
AAGACCCTGCCTCCCCCTCTCATTGCGGTGCTTATAGCATTATCTCCCCTCAACAACACCCCAGGATGTCTTGGTCTTGCACTTGCCCAAACGGCAGAAATAGAAAGAGG
AGGTGCATTGTTTAATCAAGCTTGCATTGGCTGCCATGATGGAGGGGGAAACATAATTCAGCCCGGTGCAACACTCTTTTCAAGTGATCTTGAAAGAAATGGAGCTGATG
CCGAAGAGGAGATCTACCGTATTACATATTATGGGAAAGGAAGAATGCCTGGTTTTGGTGAGAACTGTAAGCCAAGGGGTCAATGCACATTTGGTCCCCGTTTGCAGGAG
GAAGAAATTAGGCTTTTGGCGAAGTTTGTAAAGATACAGGCAGATCGGGGGTGGCCTAACCCATAG
Protein sequenceShow/hide protein sequence
MSDGTKFSCRKTKDELERSTVCPTRLSLWIGQPQPNWSLGQQARQPQAHPRVQDPPKRREPARVTASETKEIQMHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKIL
KTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQE
EEIRLLAKFVKIQADRGWPNP