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Clc01G26685 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G26685
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein, putative, unclassified
Genome locationClcChr01:36693657..36696150
RNA-Seq ExpressionClc01G26685
SyntenyClc01G26685
Gene Ontology termsGO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFC58434.1 RNA-directed DNA polymerase, eukaryota, reverse transcriptase zinc-binding domain protein [Tanacetum cinerariifolium]7.8e-0735.56Show/hide
Query:  IQVGNDINTSFWHDRWIHNAPMLTLYPRLYTSSSHKLSTVNNYWEAQHGWTISYRRSFKE-EEFDDWMALMNLLIDVWPTHTRDKWLCNL
        I+VGN  NT FW D+W+ + P+   +PR++     + S+V   WEA   +  S+RR  ++  E   W+ L++LL  V+ + + D+W CNL
Subjt:  IQVGNDINTSFWHDRWIHNAPMLTLYPRLYTSSSHKLSTVNNYWEAQHGWTISYRRSFKE-EEFDDWMALMNLLIDVWPTHTRDKWLCNL

KAA0057629.1 retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]7.5e-1049.28Show/hide
Query:  LTLYPRLYTSSSHKLSTVNNYWEAQHGWTISYRRSFKEEEFDDWMALMNLLIDVWPTHTRDKWLCNLHK
        L L+P LY  +++KLS V+N+WE  +GW    RR+ +EEE +D +ALMNL+  + PT +RDKW  NL K
Subjt:  LTLYPRLYTSSSHKLSTVNNYWEAQHGWTISYRRSFKEEEFDDWMALMNLLIDVWPTHTRDKWLCNLHK

KAE8649124.1 hypothetical protein Csa_014630 [Cucumis sativus]7.8e-2357.47Show/hide
Query:  MTHLNLIKERATIQVGNDINTSFWHDRWIHNAPMLTLYPRLYTSSSHKLSTVNNYWEAQHG--WTISYRRSFKEEEFDDWMALMNLL
        ++HLNLI+ER +I+VGN    SFWH+ WI+ AP+  L+PRL T +++K STVNN+W+ QHG  WTI+YRR+FKE+EF++WMAL+ L+
Subjt:  MTHLNLIKERATIQVGNDINTSFWHDRWIHNAPMLTLYPRLYTSSSHKLSTVNNYWEAQHG--WTISYRRSFKEEEFDDWMALMNLL

KAG5622213.1 hypothetical protein H5410_007431 [Solanum commersonii]1.0e-0636.11Show/hide
Query:  ATIQVGNDINTSFWHDRWIHNAPMLTLYPRLYTSSSHKLSTVNNYWEAQHGWTISYRRSFKEEEFDDWMALM
        AT++VG+  +  FW D W+ N P+L ++PR++  +S+ +ST++  WE  + W ++ RR+    E +++MALM
Subjt:  ATIQVGNDINTSFWHDRWIHNAPMLTLYPRLYTSSSHKLSTVNNYWEAQHGWTISYRRSFKEEEFDDWMALM

KGN44355.1 hypothetical protein Csa_016666 [Cucumis sativus]4.4e-1058.62Show/hide
Query:  SHKLSTVNNYWEAQHGWTISYRRSFKEEEFDDWMALMNLLIDVWPTHTRDKWLCNLHK
        ++ L+TV+N WE +HGW ISYRR+ KEEEF+DW+ L NLL  V P  TRDKW  N+ K
Subjt:  SHKLSTVNNYWEAQHGWTISYRRSFKEEEFDDWMALMNLLIDVWPTHTRDKWLCNLHK

TrEMBL top hitse value%identityAlignment
A0A0A0K3T0 Uncharacterized protein2.1e-1058.62Show/hide
Query:  SHKLSTVNNYWEAQHGWTISYRRSFKEEEFDDWMALMNLLIDVWPTHTRDKWLCNLHK
        ++ L+TV+N WE +HGW ISYRR+ KEEEF+DW+ L NLL  V P  TRDKW  N+ K
Subjt:  SHKLSTVNNYWEAQHGWTISYRRSFKEEEFDDWMALMNLLIDVWPTHTRDKWLCNLHK

A0A2K3N9D8 Cysteine-rich receptor-like protein kinase (Fragment)6.4e-0732.29Show/hide
Query:  NLIKERATIQVGNDINTSFWHDRWIHNAPMLTLYPRLYTSSSHKLSTVNNYWEAQHG---WTISYRRSFKEEEFDDWMALMNLLIDVWPTHTRDKW
        N + +    ++GN ++TSFW+ +WI   P+   +PRL++ S+HK + V ++ E++ G   W+ S+RR+  + E D  + L  LL     T   D W
Subjt:  NLIKERATIQVGNDINTSFWHDRWIHNAPMLTLYPRLYTSSSHKLSTVNNYWEAQHG---WTISYRRSFKEEEFDDWMALMNLLIDVWPTHTRDKW

A0A2Z6P1S0 Reverse transcriptase domain-containing protein8.4e-0732.99Show/hide
Query:  NLIKERATIQVGNDINTSFWHDRWIHNAPMLTLYPRLYTSSSHKLSTVNNYWE---AQHGWTISYRRSFKEEEFDDWMALMNLLIDVWPTHTRDKWL
        N + E    +VGN  +TSFW  +WI +AP+  ++PRL++ S+HK   V +++E       W  S+RR   + E D    L  LL+    +   D W+
Subjt:  NLIKERATIQVGNDINTSFWHDRWIHNAPMLTLYPRLYTSSSHKLSTVNNYWE---AQHGWTISYRRSFKEEEFDDWMALMNLLIDVWPTHTRDKWL

A0A5A7UVQ5 Retrotransposon protein, putative, unclassified3.6e-1049.28Show/hide
Query:  LTLYPRLYTSSSHKLSTVNNYWEAQHGWTISYRRSFKEEEFDDWMALMNLLIDVWPTHTRDKWLCNLHK
        L L+P LY  +++KLS V+N+WE  +GW    RR+ +EEE +D +ALMNL+  + PT +RDKW  NL K
Subjt:  LTLYPRLYTSSSHKLSTVNNYWEAQHGWTISYRRSFKEEEFDDWMALMNLLIDVWPTHTRDKWLCNLHK

A0A699Q259 RNA-directed DNA polymerase, eukaryota, reverse transcriptase zinc-binding domain protein (Fragment)3.8e-0735.56Show/hide
Query:  IQVGNDINTSFWHDRWIHNAPMLTLYPRLYTSSSHKLSTVNNYWEAQHGWTISYRRSFKE-EEFDDWMALMNLLIDVWPTHTRDKWLCNL
        I+VGN  NT FW D+W+ + P+   +PR++     + S+V   WEA   +  S+RR  ++  E   W+ L++LL  V+ + + D+W CNL
Subjt:  IQVGNDINTSFWHDRWIHNAPMLTLYPRLYTSSSHKLSTVNNYWEAQHGWTISYRRSFKE-EEFDDWMALMNLLIDVWPTHTRDKWLCNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACACTTGAATCTCATTAAGGAGCGAGCTACTATCCAAGTGGGGAATGACATTAACACATCTTTTTGGCATGACCGTTGGATCCACAATGCGCCTATGTTGACCCT
TTATCCTCGACTATACACTTCGTCTTCCCACAAGTTGTCCACCGTTAACAATTATTGGGAGGCCCAACATGGCTGGACCATCTCCTATAGAAGAAGTTTCAAAGAAGAAG
AATTTGACGATTGGATGGCTCTTATGAACCTTCTTATTGATGTTTGGCCTACTCATACTAGAGATAAATGGTTATGCAATCTTCACAAAATGATGTCACCCATGTTTACA
GAGAATGAGGTGGCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACACACTTGAATCTCATTAAGGAGCGAGCTACTATCCAAGTGGGGAATGACATTAACACATCTTTTTGGCATGACCGTTGGATCCACAATGCGCCTATGTTGACCCT
TTATCCTCGACTATACACTTCGTCTTCCCACAAGTTGTCCACCGTTAACAATTATTGGGAGGCCCAACATGGCTGGACCATCTCCTATAGAAGAAGTTTCAAAGAAGAAG
AATTTGACGATTGGATGGCTCTTATGAACCTTCTTATTGATGTTTGGCCTACTCATACTAGAGATAAATGGTTATGCAATCTTCACAAAATGATGTCACCCATGTTTACA
GAGAATGAGGTGGCGTAA
Protein sequenceShow/hide protein sequence
MTHLNLIKERATIQVGNDINTSFWHDRWIHNAPMLTLYPRLYTSSSHKLSTVNNYWEAQHGWTISYRRSFKEEEFDDWMALMNLLIDVWPTHTRDKWLCNLHKMMSPMFT
ENEVA