; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc02G00010 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G00010
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibosome hibernation promotion factor
Genome locationClcChr02:31583..36516
RNA-Seq ExpressionClc02G00010
SyntenyClc02G00010
Gene Ontology termsGO:0045900 - negative regulation of translational elongation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0043022 - ribosome binding (molecular function)
GO:0043024 - ribosomal small subunit binding (molecular function)
InterPro domainsIPR003489 - Ribosome hibernation promoting factor/RaiA
IPR032528 - Sigma 54 modulation/S30EA ribosomal protein, C-terminal
IPR034694 - Ribosome hibernation promoting factor, long/plastid
IPR036567 - Ribosome hibernation promotion factor-like
IPR038416 - Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576623.1 Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.6e-13484.21Show/hide
Query:  MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASF----SLHFSALKVHALSSNTSAFFNSCK-SFGTIETPSRSRHASNSFNVRMSWDGHL
        MA LTSSMQ NLLS HSL  + SSSSSSSSSSSS++S FP SF    S + + LK HALSS+ SAFFNSC   F TI    R RHA+ SF++RMSWDG L
Subjt:  MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASF----SLHFSALKVHALSSNTSAFFNSCK-SFGTIETPSRSRHASNSFNVRMSWDGHL

Query:  SSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK
        SSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSI+QRKLRKIK
Subjt:  SSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK

Query:  EKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK
        EKDSDHGRHMKGFDR K+REPAPIVV DE+EEV QEDGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK
Subjt:  EKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK

Query:  ENGKAEKLEPVTVEAAREPSLAE
        E+G AEK+E VTV  ARE SLAE
Subjt:  ENGKAEKLEPVTVEAAREPSLAE

KAG7014676.1 Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-13584.52Show/hide
Query:  MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSL----HFSALKVHALSSNTSAFFNSCK-SFGTIETPSRSRHASNSFNVRMSWDGHL
        MA LTSSMQ NLLS HSL  + SSSSSSSSSSSS++S FP SFSL    + + LK HALSS+ SAFFNSC   F TI    R RHA+ SF++RMSWDG L
Subjt:  MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSL----HFSALKVHALSSNTSAFFNSCK-SFGTIETPSRSRHASNSFNVRMSWDGHL

Query:  SSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK
        SSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSI+QRKLRKIK
Subjt:  SSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK

Query:  EKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK
        EKDSDHGRHMKGFDR K+R+PAPIVV DE+EEV QEDGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK
Subjt:  EKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK

Query:  ENGKAEKLEPVTVEAAREPSLAE
        E+G AEK+E VTVE ARE SLAE
Subjt:  ENGKAEKLEPVTVEAAREPSLAE

XP_004147328.1 ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus]4.3e-14889.62Show/hide
Query:  MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTSAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKL
        MATLTSSMQANLLS HSL        S    SSS++S+FPASFSLHFSALKVHALSSN SAFFNSCK+FGTIET SR+RHASNSF++RM+WDG LSSVKL
Subjt:  MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTSAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKL

Query:  IVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSD
        IVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV+ASIDLVSSIIQRKLRKIKEKDSD
Subjt:  IVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSD

Query:  HGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKA
         GRH+KGFDR KVREPAPIVV DE+EEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG A
Subjt:  HGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKA

Query:  EKLEPVTVEAAREPSLAE
        EKLEPVT+EA REPSLAE
Subjt:  EKLEPVTVEAAREPSLAE

XP_008460813.1 PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo]7.4e-14889.62Show/hide
Query:  MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTSAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKL
        MATLTSSMQANLLS HSL             SSS++S+FPA FSLHFSALKVHALSSN SAFFNSCK+FGTIET SR+RHASNSF++RM+WDGHLSSVKL
Subjt:  MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTSAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKL

Query:  IVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSD
        IVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASIDLVSSIIQRKLRKIKEKDSD
Subjt:  IVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSD

Query:  HGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKA
         GRH+KGFDR KVREPAPIVV DE+EEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG A
Subjt:  HGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKA

Query:  EKLEPVTVEAAREPSLAE
        EKLEPVTVEAAREPSLAE
Subjt:  EKLEPVTVEAAREPSLAE

XP_038900446.1 ribosome-binding factor PSRP1, chloroplastic [Benincasa hispida]2.5e-14389.06Show/hide
Query:  MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHAL--SSNTSAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSV
        MA LTSSM  +LL  HSL       SSSSSSSSS+ISFFPASFSLHFSALKVHAL  SS  SAFFNSCKSF T ET SR+RHASNSFNVRMSWDG LSSV
Subjt:  MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHAL--SSNTSAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSV

Query:  KLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKD
        KLIVQ KNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKD
Subjt:  KLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKD

Query:  SDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG
        SD GRHMKGFDR KVREPAPIVV DEDEEVF+ED GEVIDEIVR KYFDMPPLT+EEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG
Subjt:  SDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG

Query:  KAEKLEPVTVEAAREPSLAE
        +AEKLE VT++AAREPSLAE
Subjt:  KAEKLEPVTVEAAREPSLAE

TrEMBL top hitse value%identityAlignment
A0A1S3CCT7 ribosome-binding factor PSRP1, chloroplastic3.6e-14889.62Show/hide
Query:  MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTSAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKL
        MATLTSSMQANLLS HSL             SSS++S+FPA FSLHFSALKVHALSSN SAFFNSCK+FGTIET SR+RHASNSF++RM+WDGHLSSVKL
Subjt:  MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTSAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKL

Query:  IVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSD
        IVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASIDLVSSIIQRKLRKIKEKDSD
Subjt:  IVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSD

Query:  HGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKA
         GRH+KGFDR KVREPAPIVV DE+EEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG A
Subjt:  HGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKA

Query:  EKLEPVTVEAAREPSLAE
        EKLEPVTVEAAREPSLAE
Subjt:  EKLEPVTVEAAREPSLAE

A0A5D3BQR1 Ribosome-binding factor PSRP13.6e-14889.62Show/hide
Query:  MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTSAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKL
        MATLTSSMQANLLS HSL             SSS++S+FPA FSLHFSALKVHALSSN SAFFNSCK+FGTIET SR+RHASNSF++RM+WDGHLSSVKL
Subjt:  MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTSAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKL

Query:  IVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSD
        IVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASIDLVSSIIQRKLRKIKEKDSD
Subjt:  IVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSD

Query:  HGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKA
         GRH+KGFDR KVREPAPIVV DE+EEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG A
Subjt:  HGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKA

Query:  EKLEPVTVEAAREPSLAE
        EKLEPVTVEAAREPSLAE
Subjt:  EKLEPVTVEAAREPSLAE

A0A6J1CJG5 ribosome-binding factor PSRP1, chloroplastic1.3e-13483.33Show/hide
Query:  MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSL----HFSALKVHALSSNTSAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLS
        MATLTSSM  NLL              S+ SSSS+ S FPASFSL    + SALK+H LSS+TS FFNSC  F TI+   R+RHA+NSF +RMSWDG LS
Subjt:  MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSL----HFSALKVHALSSNTSAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLS

Query:  SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE
        SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR EEDAETVYASIDLVSSIIQRKLRKIKE
Subjt:  SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE

Query:  KDSDHGRHMKGFDRLKVREPAPIVVGD--EDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIP
        KDSD GRHMKGFDRLKVREPAPIVV D  E+EEV  ED GEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIP
Subjt:  KDSDHGRHMKGFDRLKVREPAPIVVGD--EDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIP

Query:  KENGKAEKLEPVTVEAAREPSLAE
        KENG+AEKLEPVTVE AREPSLAE
Subjt:  KENGKAEKLEPVTVEAAREPSLAE

A0A6J1E3S3 ribosome-binding factor PSRP1, chloroplastic1.0e-13483.59Show/hide
Query:  MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSL----HFSALKVHALSSNTSAFFNSCK-SFGTIETPSRSRHASNSFNVRMSWDGHL
        MA LTSSMQ NLLS HSL      + SSSSSSSS++S FP SFSL    + + LK HALSS+ SAFFNSC   F TI    R RHA+ SF++RMSWDG L
Subjt:  MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSL----HFSALKVHALSSNTSAFFNSCK-SFGTIETPSRSRHASNSFNVRMSWDGHL

Query:  SSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK
        SSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSI+QRKLRKIK
Subjt:  SSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK

Query:  EKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK
        EKDSDHGRHMKGFDR K+REPAPIVV DE+EEV QEDGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK
Subjt:  EKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK

Query:  ENGKAEKLEPVTVEAAREPSLAE
        E+G AEK+E VTVE ARE SLAE
Subjt:  ENGKAEKLEPVTVEAAREPSLAE

A0A6J1J523 ribosome-binding factor PSRP1, chloroplastic3.6e-13286.33Show/hide
Query:  SSSSSSSSSSSSISFFPASFSL----HFSALKVHALSSNTSAFFNSCK-SFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVE
        SSSSSSSSSSS++S FP SFSL    + + LK+HALSS+ SAFFNSC   F TI    R RHA+ SF++RMSWDG LSSVKLIVQGKNLELTEAVKKHVE
Subjt:  SSSSSSSSSSSSISFFPASFSL----HFSALKVHALSSNTSAFFNSCK-SFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVE

Query:  EKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAP
        EKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSI+QRKLRKIKEKDSDHGRHMKGFDR K+REPAP
Subjt:  EKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAP

Query:  IVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKAEKLEPVTVEAAREPSLAE
        IVV DE+EEV QEDGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG AEK+E VTVE ARE SLAE
Subjt:  IVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKAEKLEPVTVEAAREPSLAE

SwissProt top hitse value%identityAlignment
P19954 Ribosome-binding factor PSRP1, chloroplastic2.6e-8758.18Show/hide
Query:  MATL-TSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTSAFFNSCKSFG---TIETPSRSRHASNSFNVRMSWDGHLS
        MATL TS++  N    +SLS+S + SS+ ++                        LSS  S F NSC S G    +++   SR+  N   V MSWDG LS
Subjt:  MATL-TSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTSAFFNSCKSFG---TIETPSRSRHASNSFNVRMSWDGHLS

Query:  SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE
        SVKLI+QG+NLE+++ V+ HVE+KVGK+V KHSHLVREVDVRLS RGG+  KGP++RRCEVTLFTK+HGV+RAEEDAE++Y+SIDLVSSIIQRKLRKIK+
Subjt:  SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE

Query:  KDSDHGRHMKGFDRLKVREPAPIVVGDED--EEV------FQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGG
        K SDHGRHMKGF+R KVR+P P+ +  E+  EEV         +  + I+E+VRTKYFDMPPLT+ EA+EQL+N+DHDFY FRNEETG+INILYKRK+GG
Subjt:  KDSDHGRHMKGFDRLKVREPAPIVVGDED--EEV------FQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGG

Query:  YGLIIPKENGKAEKLEPVTVEAAREPSLAE
        YGLIIPK+ GK EKLE + V+  ++PS AE
Subjt:  YGLIIPKENGKAEKLEPVTVEAAREPSLAE

P47908 Ribosome hibernation promotion factor9.1e-3239.7Show/hide
Query:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK
        +KL++QG N+ +TE++  +VE K+ KA +       +VDV LSV      +     + EVT++     V+RA+E +E +YASIDLVS  I R+LRK KEK
Subjt:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK

Query:  DSDHGRHM-KGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK
        +     H+ +    +   +P P       + +  +   E+  E+VR KYF MPP+T++EA+EQL+ +DHDFY F N++T  IN++Y R  GGYG+I P+
Subjt:  DSDHGRHM-KGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK

P74518 Ribosome hibernation promotion factor1.1e-3442.16Show/hide
Query:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRI---RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKI
        +KL++QG N+ +TEA+  +VEEKV +AV+   +L  +VDV LSV      +  RI    + EVT++     V+RA+E +E +YASIDLV+  I R+LRK 
Subjt:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRI---RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKI

Query:  KEK--DSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLI
        KE+  D  HG         ++ E  P+     +E +  +   E+  E++R KYF MPP+ +E+A+EQL+ +DHDFY FRN++T EIN++Y R  GGYG+I
Subjt:  KEK--DSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLI

Query:  IPKE
         P +
Subjt:  IPKE

Q4L4H7 Ribosome hibernation promotion factor1.4e-1934.67Show/hide
Query:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK--
        ++  + G NL +T+A++ ++E+K+GK ++++ + V      + V+  +        + EVT+   K+  +RAEE  + +YA IDLV+S ++R++RK K  
Subjt:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK--

Query:  --EKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLI
           K   HG   + F   +V+E  P  V D + E    +  E+  EI+R+K F + P+  EEA+ Q++ + HDFY F + ET   +I+YKRKDG YGLI
Subjt:  --EKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLI

Q9RVE7 Ribosome hibernation promotion factor2.1e-2035.18Show/hide
Query:  VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDH
        + G+N+E+TE ++++VEEK+ + + +++  + +  V L+VR  +     R  R EV L     G++RAEE    +YA+ID  S +++R+LRK K      
Subjt:  VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDH

Query:  GRHMKGFDRLKVR-EPAPIVVGDEDEEVFQEDGGEVID-------EIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLI
         R+MK   R + R EP P   G  + EV  +  G  +D       EIVR K F++ P++ E+A+ Q++ + HDFY F++ + G+  ++Y+R+DG YGLI
Subjt:  GRHMKGFDRLKVR-EPAPIVVGDEDEEVFQEDGGEVID-------EIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLI

Arabidopsis top hitse value%identityAlignment
AT5G24490.1 30S ribosomal protein, putative8.8e-9974.19Show/hide
Query:  RSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV
        R  +  +S  V+MSWDG L+SVKLI+QGKNLEL+E +K+HVEEKVGK+VQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV
Subjt:  RSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV

Query:  YASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPA--PIVVGDEDEEVF----QEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGF
        YA IDLVS+IIQRKLRKIKEKDSDHGRHMKGF+RLKVREP   P+V   ED        +E+  ++I EIVRTK F+MPPLTV EA+EQL+ + HDFYGF
Subjt:  YASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPA--PIVVGDEDEEVF----QEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGF

Query:  RNEETGEINILYKRKDGGYGLIIPKENGKAEKLEPVTVEAAREPSLAE
        +NEETGEINI+YKRK+GGYGLIIPK++GKAEK+EP+  E   E S AE
Subjt:  RNEETGEINILYKRKDGGYGLIIPKENGKAEKLEPVTVEAAREPSLAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAATGGCCACTCTCACCTCTTCTATGCAGGCCAATCTCCTTTCCCATCACTCCTTATCTTCTTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
CATTTCTTTCTTTCCAGCTTCCTTCTCTCTTCACTTCTCTGCGCTCAAAGTTCATGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTGGAACCA
TTGAGACTCCATCCCGCAGCCGTCATGCCTCAAACTCTTTCAATGTTCGGATGTCCTGGGACGGCCACCTCTCCTCTGTCAAATTAATTGTCCAAGGGAAAAATTTGGAG
TTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGA
GTTTGGGAAGGGTCCAAGGATAAGAAGATGTGAGGTTACTTTATTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCCGAGACCGTCTATGCAAGCATTGATT
TGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCATGGCCGACACATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCA
ATAGTAGTTGGAGATGAGGATGAGGAAGTTTTTCAAGAAGATGGTGGAGAAGTTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGA
AGCAATTGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTTCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTA
TTATCCCAAAAGAAAATGGCAAAGCTGAGAAATTAGAACCTGTCACAGTTGAAGCAGCCAGAGAACCATCCTTAGCGGAATGA
mRNA sequenceShow/hide mRNA sequence
CATCTCCATGAGCTTTCTTAAAGCTTTTTTTTCCTCAACTCCTTCCCATTCTTCGCTTAATCCTGAAATCACCACCCATTAGATGCGGGTCCCGCGGGCTCGTCACACGG
GAAGATGGACACCTCTAGCTCTCTTACAAATATCAAAGGAGAAAAAGACAAATAAGAAAGGGCACATCCCTCGAGTAAATTATCCATAGAAAAACCTTGCTTTCTTTATC
CACTTGTTTCCCTTTTCTTTTCTCCGCTGTTTCCTCATCAATTCCAAGTTTCCTACTCAATAATGGTAATGGCCACTCTCACCTCTTCTATGCAGGCCAATCTCCTTTCC
CATCACTCCTTATCTTCTTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTTCTTTCTTTCCAGCTTCCTTCTCTCTTCACTTCTCTGCGCTCAA
AGTTCATGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTGGAACCATTGAGACTCCATCCCGCAGCCGTCATGCCTCAAACTCTTTCAATGTTC
GGATGTCCTGGGACGGCCACCTCTCCTCTGTCAAATTAATTGTCCAAGGGAAAAATTTGGAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCA
GTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTTGGGAAGGGTCCAAGGATAAGAAGATGTGAGGTTACTTTATTCAC
AAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCCGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAG
ATTCAGACCATGGCCGACACATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTAGTTGGAGATGAGGATGAGGAAGTTTTTCAAGAAGATGGTGGA
GAAGTTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATTGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTTCG
GAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAAAGCTGAGAAATTAGAACCTGTCACAG
TTGAAGCAGCCAGAGAACCATCCTTAGCGGAATGATGGGAGTTCACGGAGGAATTTTCATGTTCTAGATATCTTGCCACTGTTACATTCGCTTAAGACTGCAAAACTTCG
ACTTCAACATGCATCTGAAGGCCTTTCTTGTAGAGAGTATATAGATTTAGATTTGAGGTTATTTGGTGATGAAGACAATATTGGAACAAGAAATCAGTAAAAAGTAAAAT
GAGATGCAAAAAGTATTCTATGGAATGAATGATTCAGCTTGCAGGGGTGTTACCATGAAAATATACTGTTTTCTTTTGTAATAATGGTTTCTTTTCCCCTAGCGTGGCCA
GTTCTGTTTATATTGTTGGTAGTTGAATATTGATTCGTCTTTCTTCCTTTCCTAAAGAATCCCCCGGTCGCCACATTTTTACTTTATTCATATGTGACATGAATATTCCT
TGTCCCTACAACATTGATTAATGCAATAAAAATAGATAACTAGAAGTAATTGTTGTTCC
Protein sequenceShow/hide protein sequence
MVMATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTSAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLE
LTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAP
IVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKAEKLEPVTVEAAREPSLAE