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Clc02G00470 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G00470
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTetratricopeptide-like helical
Genome locationClcChr02:467779..468729
RNA-Seq ExpressionClc02G00470
SyntenyClc02G00470
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605328.1 hypothetical protein SDJN03_02645, partial [Cucurbita argyrosperma subsp. sororia]9.3e-1775Show/hide
Query:  SDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSHAFSSDAPIGHKRLDPHIINGCDCAS
        SDVLS KQNAIADR + KCFQQ EWAI HV CPCLSKSH     A I H RLDPHIINGCD AS
Subjt:  SDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSHAFSSDAPIGHKRLDPHIINGCDCAS
KAG7035286.1 hypothetical protein SDJN02_02081, partial [Cucurbita argyrosperma subsp. argyrosperma]9.3e-1775Show/hide
Query:  SDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSHAFSSDAPIGHKRLDPHIINGCDCAS
        SDVLS KQNAIADR + KCFQQ EWAI HV CPCLSKSH     A I H RLDPHIINGCD AS
Subjt:  SDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSHAFSSDAPIGHKRLDPHIINGCDCAS
XP_008460886.1 PREDICTED: uncharacterized protein LOC103499627 [Cucumis melo]1.4e-2886.49Show/hide
Query:  EVPSEVPASNCNKRRKMLGVQNSDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSHAFSSDAPIGHKRL
        +VPSEVPASNCN  RKMLG+QNSDVLS K NAIADRQA KCFQQIEWAIKHVLCPCLSKS+AF+SDAPIGH RL
Subjt:  EVPSEVPASNCNKRRKMLGVQNSDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSHAFSSDAPIGHKRL
XP_022946993.1 uncharacterized protein LOC111451005 [Cucurbita moschata]1.2e-0882.05Show/hide
Query:  SDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSH
        SDVLS KQNAIADR + KCFQQ EWAI HV CPCLSKSH
Subjt:  SDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSH
XP_023532647.1 uncharacterized protein LOC111794747 [Cucurbita pepo subsp. pepo]6.0e-0879.49Show/hide
Query:  SDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSH
        SDVLS  QNAIADR + KCFQQ EWAI HV CPCLSKSH
Subjt:  SDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSH
TrEMBL top hitse value%identityAlignment
A0A1S3CCZ2 uncharacterized protein LOC1034996276.7e-2986.49Show/hide
Query:  EVPSEVPASNCNKRRKMLGVQNSDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSHAFSSDAPIGHKRL
        +VPSEVPASNCN  RKMLG+QNSDVLS K NAIADRQA KCFQQIEWAIKHVLCPCLSKS+AF+SDAPIGH RL
Subjt:  EVPSEVPASNCNKRRKMLGVQNSDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSHAFSSDAPIGHKRL
A0A5D3BSI6 Tetratricopeptide-like helical6.7e-2986.49Show/hide
Query:  EVPSEVPASNCNKRRKMLGVQNSDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSHAFSSDAPIGHKRL
        +VPSEVPASNCN  RKMLG+QNSDVLS K NAIADRQA KCFQQIEWAIKHVLCPCLSKS+AF+SDAPIGH RL
Subjt:  EVPSEVPASNCNKRRKMLGVQNSDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSHAFSSDAPIGHKRL
A0A6J1G5E0 uncharacterized protein LOC1114510055.9e-0982.05Show/hide
Query:  SDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSH
        SDVLS KQNAIADR + KCFQQ EWAI HV CPCLSKSH
Subjt:  SDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSH
A0A6J1KY70 uncharacterized protein LOC111499802 isoform X16.1e-0668.29Show/hide
Query:  SDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSHAF
        SDVLS KQNAIADR + KCFQQ EWAI HV CP +   H F
Subjt:  SDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSHAF
A0A6J1L778 uncharacterized protein LOC111499802 isoform X23.0e-0569.23Show/hide
Query:  SDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSH
        SDVLS KQNAIADR + KCFQQ EWAI HV CP +   H
Subjt:  SDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSH
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCATAAAATGCTTTCACACATGGAAATTTTCCCCCTCTTCAAGAAAGTTCACAGAAAATATTTTGCCTCAATCAAGTAACTTTTGGTTTGTATTACCACAACTTTC
AAATCAGCCTTCTCTTTCTTATTCTTCAATTATTAATAGTTTTGATGGTTTTTTTTTTTGGCAAGGAGAAGTCCCATCAGAAGTACCTGCCAGTAATTGCAACAAACGGA
GAAAGATGCTGGGGGTTCAGAATTCTGATGTGCTCTCACTCAAGCAAAATGCCATTGCTGACAGGCAAGCAGCGAAGTGCTTCCAGCAAATTGAGTGGGCCATCAAGCAT
GTGCTTTGCCCTTGCCTTTCTAAATCACATGCGTTCAGTTCTGATGCTCCTATTGGACATAAGAGACTTGATCCACACATCATCAATGGATGTGATTGTGCGTCAGGTTC
ACTTAATCTAATCTGCTTTATTGATTTTCTTGTATCAAATCAAGTCATACCAAATTTTGGATTGTGA
mRNA sequenceShow/hide mRNA sequence
TAGAAATTGGATAGAAACTTTGAGCACCTGGGCTGGATAATGGAGGCATCAAAACTGTCCTTAATTATTTAAGGTTGATTGACTCCTACTACAAAATGGAAGTCACCATT
TAGGAAGGCTTTTCTTTCACGCTGAAAAGTCTTTGCTGTGACTATGCACTGATTTTGTACTTTTAGTGCTTTCATATTAACTTTTTAAATGGTGAGACCACAATGCTTTG
TCCTAGAGTTACTATAGGTCTTCTGTGGGTCCTGATATGAATTAAAAAATTGCTCTTTTACGACCATTCTGATGTTCATAAAATGCTTTCACACATGGAAATTTTCCCCC
TCTTCAAGAAAGTTCACAGAAAATATTTTGCCTCAATCAAGTAACTTTTGGTTTGTATTACCACAACTTTCAAATCAGCCTTCTCTTTCTTATTCTTCAATTATTAATAG
TTTTGATGGTTTTTTTTTTTGGCAAGGAGAAGTCCCATCAGAAGTACCTGCCAGTAATTGCAACAAACGGAGAAAGATGCTGGGGGTTCAGAATTCTGATGTGCTCTCAC
TCAAGCAAAATGCCATTGCTGACAGGCAAGCAGCGAAGTGCTTCCAGCAAATTGAGTGGGCCATCAAGCATGTGCTTTGCCCTTGCCTTTCTAAATCACATGCGTTCAGT
TCTGATGCTCCTATTGGACATAAGAGACTTGATCCACACATCATCAATGGATGTGATTGTGCGTCAGGTTCACTTAATCTAATCTGCTTTATTGATTTTCTTGTATCAAA
TCAAGTCATACCAAATTTTGGATTGTGAATGTTTGATTGATGAGAAAGTCAGGTATATTATAATTAGAGTTTTCAGATGTAGAATGTGG
Protein sequenceShow/hide protein sequence
MFIKCFHTWKFSPSSRKFTENILPQSSNFWFVLPQLSNQPSLSYSSIINSFDGFFFWQGEVPSEVPASNCNKRRKMLGVQNSDVLSLKQNAIADRQAAKCFQQIEWAIKH
VLCPCLSKSHAFSSDAPIGHKRLDPHIINGCDCASGSLNLICFIDFLVSNQVIPNFGL