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Clc02G00480 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G00480
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTetratricopeptide-like helical
Genome locationClcChr02:468741..472793
RNA-Seq ExpressionClc02G00480
SyntenyClc02G00480
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147349.3 uncharacterized protein LOC101214268 [Cucumis sativus]2.0e-11691.24Show/hide
Query:  MKIRLKFCHQNQPTAKAMGSTTARVLTPHLLFPSSSSP--NPSTNPNPKSLKPFSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDP
        MKIRLKFCHQN+PT  AMGSTTAR+L PHLL PSSSS   NPSTN   KS KP SFPNHN LPTRRLLLFSLPIATAFLLPIP NPIQPSS  AVESFDP
Subjt:  MKIRLKFCHQNQPTAKAMGSTTARVLTPHLLFPSSSSP--NPSTNPNPKSLKPFSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDP

Query:  VTRSEREASAAISRRVSEAVELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAAL
        V+RSE++ASAAISRRVSEAVELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAAL
Subjt:  VTRSEREASAAISRRVSEAVELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAAL

Query:  YVDKHAALLAENQFAIATLLDPHYVDISYVKETKHWPPSLISSLQHFLTLS
        YVDKHAALLAENQF IATLLDPHYVDISYVKETKHWPPSLISSLQHFLTLS
Subjt:  YVDKHAALLAENQFAIATLLDPHYVDISYVKETKHWPPSLISSLQHFLTLS

XP_022156688.1 uncharacterized protein LOC111023534 [Momordica charantia]8.4e-9985.78Show/hide
Query:  MGSTTARVLTPHLLFPSSSSPNPSTNPNPKSLKPFSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDPVTRSEREASAAISRRVSEA
        M S TARVL PHL FPSSSS   S+NPNPK  KP      N LP+RRL LFSLP ATAF+LPIP+NPI PSSC A+E F+PVT SER+ASAA+SRRVSEA
Subjt:  MGSTTARVLTPHLLFPSSSSPNPSTNPNPKSLKPFSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDPVTRSEREASAAISRRVSEA

Query:  VELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAALLAENQFAIATL
        VELLDKGRELQALGDFN+ALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHA LLAENQF IATL
Subjt:  VELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAALLAENQFAIATL

Query:  LDPHYVDISYVKETKHWPPSLISSLQHFLTLS
        LDPHYVDISYVKETKHWPPSLISSLQHFLTLS
Subjt:  LDPHYVDISYVKETKHWPPSLISSLQHFLTLS

XP_022932010.1 uncharacterized protein LOC111438340 [Cucurbita moschata]2.0e-10088.36Show/hide
Query:  MGSTTARVLTPHLLFPSSSSPNPSTNPNPKSLKPFSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDPVTRSEREASAAISRRVSEA
        M S TAR L PHLLFPSSS+ NP+ NPN K  KP S P    LPTRRLLLFSLPIATA LLPIPSNPIQPSSC A+E FDPV+RSEREASAAISRRVSEA
Subjt:  MGSTTARVLTPHLLFPSSSSPNPSTNPNPKSLKPFSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDPVTRSEREASAAISRRVSEA

Query:  VELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAALLAENQFAIATL
        VELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRA ALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHA LLAENQF IATL
Subjt:  VELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAALLAENQFAIATL

Query:  LDPHYVDISYVKETKHWPPSLISSLQHFLTLS
        LDPHYVDISYVKETKHWPPSLISSL++FLTLS
Subjt:  LDPHYVDISYVKETKHWPPSLISSLQHFLTLS

XP_023512389.1 uncharacterized protein LOC111777156 [Cucurbita pepo subsp. pepo]9.0e-10188.36Show/hide
Query:  MGSTTARVLTPHLLFPSSSSPNPSTNPNPKSLKPFSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDPVTRSEREASAAISRRVSEA
        M S TAR L PHLLFPSSS+ NP+ NPN K  KP SFP    LPTRRLLLFSLPIATA LLPIPSNPIQPSSC A+ESFDPV+RSEREASAAISRRVSEA
Subjt:  MGSTTARVLTPHLLFPSSSSPNPSTNPNPKSLKPFSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDPVTRSEREASAAISRRVSEA

Query:  VELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAALLAENQFAIATL
        VELLDKGRELQALGDF+ ALLYFTQVIDKYKDFAFSDYARVGRA ALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHA LLAENQF IATL
Subjt:  VELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAALLAENQFAIATL

Query:  LDPHYVDISYVKETKHWPPSLISSLQHFLTLS
        LDPHYVDISYVKETKHWPPSLISSL++FLTLS
Subjt:  LDPHYVDISYVKETKHWPPSLISSLQHFLTLS

XP_038901433.1 uncharacterized protein LOC120088306 isoform X1 [Benincasa hispida]2.4e-10992.67Show/hide
Query:  MGSTTARVLTPHLLFPSSSSPNPSTNPNPKSLKPFSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDPVTRSEREASAAISRRVSEA
        MGS TARVL PHLLFPSSSS NP  NPN KS KPF+F NHNPLPTRRLLLFSLPIATAFLLPI SN  +PSSC AVESFDPV+RSEREASAAISRRVSEA
Subjt:  MGSTTARVLTPHLLFPSSSSPNPSTNPNPKSLKPFSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDPVTRSEREASAAISRRVSEA

Query:  VELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAALLAENQFAIATL
        VELLDKGRELQALGDFNQALLYFT+VIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAALLAENQF IATL
Subjt:  VELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAALLAENQFAIATL

Query:  LDPHYVDISYVKETKHWPPSLISSLQHFLTLS
        LDPHYVDISYVKETKHWPPSLISSLQHFLTLS
Subjt:  LDPHYVDISYVKETKHWPPSLISSLQHFLTLS

TrEMBL top hitse value%identityAlignment
A0A0A0LN32 Uncharacterized protein9.7e-11791.24Show/hide
Query:  MKIRLKFCHQNQPTAKAMGSTTARVLTPHLLFPSSSSP--NPSTNPNPKSLKPFSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDP
        MKIRLKFCHQN+PT  AMGSTTAR+L PHLL PSSSS   NPSTN   KS KP SFPNHN LPTRRLLLFSLPIATAFLLPIP NPIQPSS  AVESFDP
Subjt:  MKIRLKFCHQNQPTAKAMGSTTARVLTPHLLFPSSSSP--NPSTNPNPKSLKPFSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDP

Query:  VTRSEREASAAISRRVSEAVELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAAL
        V+RSE++ASAAISRRVSEAVELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAAL
Subjt:  VTRSEREASAAISRRVSEAVELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAAL

Query:  YVDKHAALLAENQFAIATLLDPHYVDISYVKETKHWPPSLISSLQHFLTLS
        YVDKHAALLAENQF IATLLDPHYVDISYVKETKHWPPSLISSLQHFLTLS
Subjt:  YVDKHAALLAENQFAIATLLDPHYVDISYVKETKHWPPSLISSLQHFLTLS

A0A5D3BSI6 Tetratricopeptide-like helical4.2e-9689.86Show/hide
Query:  MGSTTARVLTPHLLFPSSSSP--------NPSTNPNPKSLKPFSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDPVTRSEREASAA
        MGSTTAR+L PHLLFPSSSS         NPSTNP+ KS KP SFPNHN LPTRRLLLFSLPIATAFLLPIP+NPIQPSS  AVESFDPV+RSE+EASAA
Subjt:  MGSTTARVLTPHLLFPSSSSP--------NPSTNPNPKSLKPFSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDPVTRSEREASAA

Query:  ISRRVSEAVELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAALLAE
        ISRRVSEAVELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAALLAE
Subjt:  ISRRVSEAVELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAALLAE

Query:  NQFAIATLLDPHYVDIS
        NQF IATLLDPHYVDIS
Subjt:  NQFAIATLLDPHYVDIS

A0A6J1DRA5 uncharacterized protein LOC1110235344.1e-9985.78Show/hide
Query:  MGSTTARVLTPHLLFPSSSSPNPSTNPNPKSLKPFSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDPVTRSEREASAAISRRVSEA
        M S TARVL PHL FPSSSS   S+NPNPK  KP      N LP+RRL LFSLP ATAF+LPIP+NPI PSSC A+E F+PVT SER+ASAA+SRRVSEA
Subjt:  MGSTTARVLTPHLLFPSSSSPNPSTNPNPKSLKPFSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDPVTRSEREASAAISRRVSEA

Query:  VELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAALLAENQFAIATL
        VELLDKGRELQALGDFN+ALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHA LLAENQF IATL
Subjt:  VELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAALLAENQFAIATL

Query:  LDPHYVDISYVKETKHWPPSLISSLQHFLTLS
        LDPHYVDISYVKETKHWPPSLISSLQHFLTLS
Subjt:  LDPHYVDISYVKETKHWPPSLISSLQHFLTLS

A0A6J1F108 uncharacterized protein LOC1114383409.7e-10188.36Show/hide
Query:  MGSTTARVLTPHLLFPSSSSPNPSTNPNPKSLKPFSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDPVTRSEREASAAISRRVSEA
        M S TAR L PHLLFPSSS+ NP+ NPN K  KP S P    LPTRRLLLFSLPIATA LLPIPSNPIQPSSC A+E FDPV+RSEREASAAISRRVSEA
Subjt:  MGSTTARVLTPHLLFPSSSSPNPSTNPNPKSLKPFSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDPVTRSEREASAAISRRVSEA

Query:  VELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAALLAENQFAIATL
        VELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRA ALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHA LLAENQF IATL
Subjt:  VELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAALLAENQFAIATL

Query:  LDPHYVDISYVKETKHWPPSLISSLQHFLTLS
        LDPHYVDISYVKETKHWPPSLISSL++FLTLS
Subjt:  LDPHYVDISYVKETKHWPPSLISSLQHFLTLS

A0A6J1I3T3 uncharacterized protein LOC1114703089.1e-9986.7Show/hide
Query:  MGSTTARVLTPHLLFPSSSSPNPSTNPNP-KSLKPFSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDPVTRSEREASAAISRRVSE
        M S TA  L PHLLFPSS     STNPNP K  KP SFP    LPT+RLLLFSLPIATA LLPIPSNPIQPSSC A+ESFDPV+RSEREASA ISRRVSE
Subjt:  MGSTTARVLTPHLLFPSSSSPNPSTNPNP-KSLKPFSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDPVTRSEREASAAISRRVSE

Query:  AVELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAALLAENQFAIAT
        AVELLDKGRELQALGDF+QALLYFTQVIDKYKDFAFSDYARVGRA ALYEIG REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHA LLAENQF IAT
Subjt:  AVELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAALLAENQFAIAT

Query:  LLDPHYVDISYVKETKHWPPSLISSLQHFLTLS
        LLDPHYVDISYVKETKHWPPSLISSL++FLTLS
Subjt:  LLDPHYVDISYVKETKHWPPSLISSLQHFLTLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATAAGGCTGAAGTTTTGCCACCAAAACCAACCAACAGCCAAAGCCATGGGTTCTACAACTGCAAGAGTACTGACTCCCCATCTTCTCTTTCCCTCTTCTTCCTC
TCCTAATCCTTCAACAAACCCTAATCCCAAATCTTTAAAGCCCTTCTCATTTCCCAACCATAATCCATTACCCACCAGGCGTTTGTTGCTCTTCTCCCTCCCCATAGCCA
CTGCCTTTCTTCTCCCAATTCCCAGCAATCCGATTCAACCCAGTTCTTGCCGTGCTGTCGAGAGCTTTGACCCTGTCACCCGTTCCGAGCGAGAAGCGAGTGCCGCCATT
TCCCGAAGAGTATCTGAAGCTGTGGAGCTTCTCGATAAAGGCAGGGAGTTGCAAGCTCTTGGTGATTTCAATCAAGCTCTTCTCTACTTCACTCAGGTAATTGATAAATA
TAAAGATTTTGCTTTCTCGGACTATGCCCGAGTAGGCAGAGCGTTGGCCCTGTACGAAATTGGTGACCGAGAAGAAGCCATTGCAGAGATGGAGGATGTTTCCATATCAT
TGAAGGGATATCCAGAAGTGCATGCGGCATTGGCTGCAGCTTTATACGTGGATAAGCATGCTGCATTGCTGGCTGAAAACCAATTCGCCATTGCAACTTTGCTTGATCCT
CATTATGTGGATATCTCATATGTGAAAGAAACAAAGCACTGGCCTCCTAGTTTGATTAGTTCTTTGCAACATTTCTTAACACTTTCTTAG
mRNA sequenceShow/hide mRNA sequence
TACCATAAAAAATTCACTATCTGAAGTTTAGGCAATTCATAATGGAAAAAATATGAAAATAAGGCTGAAGTTTTGCCACCAAAACCAACCAACAGCCAAAGCCATGGGTT
CTACAACTGCAAGAGTACTGACTCCCCATCTTCTCTTTCCCTCTTCTTCCTCTCCTAATCCTTCAACAAACCCTAATCCCAAATCTTTAAAGCCCTTCTCATTTCCCAAC
CATAATCCATTACCCACCAGGCGTTTGTTGCTCTTCTCCCTCCCCATAGCCACTGCCTTTCTTCTCCCAATTCCCAGCAATCCGATTCAACCCAGTTCTTGCCGTGCTGT
CGAGAGCTTTGACCCTGTCACCCGTTCCGAGCGAGAAGCGAGTGCCGCCATTTCCCGAAGAGTATCTGAAGCTGTGGAGCTTCTCGATAAAGGCAGGGAGTTGCAAGCTC
TTGGTGATTTCAATCAAGCTCTTCTCTACTTCACTCAGGTAATTGATAAATATAAAGATTTTGCTTTCTCGGACTATGCCCGAGTAGGCAGAGCGTTGGCCCTGTACGAA
ATTGGTGACCGAGAAGAAGCCATTGCAGAGATGGAGGATGTTTCCATATCATTGAAGGGATATCCAGAAGTGCATGCGGCATTGGCTGCAGCTTTATACGTGGATAAGCA
TGCTGCATTGCTGGCTGAAAACCAATTCGCCATTGCAACTTTGCTTGATCCTCATTATGTGGATATCTCATATGTGAAAGAAACAAAGCACTGGCCTCCTAGTTTGATTA
GTTCTTTGCAACATTTCTTAACACTTTCTTAGACTTTTGTAATAATATAAATACAGCTTCTGTCATAAAAAACTCGATTCCTTGCTTCGTAATTGTACAAAATTTATTAT
AGGCTACTTCAAACATCCATGTAACTAGTAGAAAAATAGTTTCTATTTAGTCTCTTATCCCTTGACGTGTAATATAAATTAATTTCTTCATTTTAACTTGCCTAATGCTT
ATCCTCATTCAGGTTCTTAGTCTATTGAATACACTTTCTTTATTGAAGGAGGATACGATAATGTGGTTGCTAGTTTTATACCATTGGAAATTAGAAAGTGAAATTATAAA
AAATATTTTGAATTTAGATCTTTAAATCTACCTTTAATGATTATTGAGACATTTATGTTAGTGTTAT
Protein sequenceShow/hide protein sequence
MKIRLKFCHQNQPTAKAMGSTTARVLTPHLLFPSSSSPNPSTNPNPKSLKPFSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDPVTRSEREASAAI
SRRVSEAVELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAALLAENQFAIATLLDP
HYVDISYVKETKHWPPSLISSLQHFLTLS